Rmu_sc0000533.1_g000004

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000533.1
Physical Location & Seq
Forward (+)
17316 .. 20564
3249 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000533.1_g000004.1.cds

Sequence Viewer

Length: 3249 bp
atggctctggaagttgtgggtggagcttttctctcttcttctcttgctgttctgtttgataggatggcttcccgtccggttgttgacttcatccgaggaaagaagaccaccgctgggctgctccacaagttgaagatgaagttgttgtcggttaataagttgcttgacgatgcagaggagaagcaactcagaaactctagagtcagggattggcttactgagcttaaagatgttctctatcatgccgatgaccttttggatgaaatcaagactgaagctctgcgttgtaagatggaacaagaagattctggaagcagcagcacatatcaggtactcaagtttagttctacttccattcatgaacttgacgaaagtctggaacccaggattctggacattcttgacagattagaagttattgtcaacgaaaaagatgtgcttgatttgaaagagggtgttaaagatagaccacaaggaagactgcccacaacttctttggtagaagagtctagtgtatatggaagggatgaagaaaaggaggccattatcaagttgttgttagcggatggtgtgactggaaataagacggatgtgcttccaattgtgggcatgggtgggcttggaaagaccactcttgctcaacttgtatacaacgatgacagagtcaagcaacattttgtccatcaatcatggtcttgtgtttcagtagaatttgatgttatcaaaataacacagatactttatggggcggtcacttcacaaacttgtaatatcacagacctaaacatgcttcaagttaaactaaaggagacgttgtcagggaagaaatttctctttgttcttgatgatgtttggactgtgactaatgacgagtgggatctcttaagccgaccctttgagagtggaggtcatggaagtaagatcattgtcacaacacgtcatgaagatgttgcaggcattgtaggtacccttcaaagtcaacatctaatgcaactatctgaggaaaactgctggtcgttgttctcaaaacatgccttcaagaatggaggtgttactgcagatctgtcgcttgaagtgattggaaaacagattgctcaaaagtgtaaaggactccctttagctgcaaaatcacttgggggtctgttactttctgaaccaaatattgagaaatgggaagaagtgttgaacaatgacatatgggagttgctagataaaaagaatggcattttgccagctctatggttgagctaccattatctacctccgaatctgaagcgttgttttgcttactgttccatatttcctcaagattatcagtttcacaaaccggatctggtgttgctgtggatggctgaagatctcttaccgtcgaaatcgaagactacattagaacaagtcggagagaactactttgatgatctagtgtcaaggtctttttttcaacctgtaccagatttggttgcgccaattttcacaatgcatgaccttgtccatgacttagcaaactttgtctctggagagttctgtgttaggttggagaacaatgatgaggtgttggaaaatgtcagcaagagtcgccacttttcgtgtatggatgcatctgccgcaattgatcaatgggacagtttgtgtgaagccaagtatttgcgaacctttctagtatcaaaatatcagtacggacgtgtacgtcccaacttagattttgatatattcctgaagcttcaatgtttaagagtgctcaatttatcagagcacaaaattggtgagctgcctagttcaattagcaagttgaagcatctaaggcactttgacttgtctgagacgtctgttaaaaagttacctgatgaaatgtgtactttatataatttacagacgttgttgttgttcgcttgtgaatctctagttgagttgccaaatgacttgggaagattaataaatttgcgtcatcttggtattgaaggcacaaagataaaaaagatgccaccaaggatgggcaaaatgaaagatctccaaacaataagaggtgagttcgtcctagacaaatacactggtggtaacattgtcgagattaaagagcttcagcagttgcgcggaacactttgcatctcggggcttcgcaatattgcgcatgtcacagatgccttggagaccaatatgaggaagaagtatttggatgaattagttttggaatggggaggcaagtctggtgacaccgacgatacgcaaaaagatagagatgtgctggagaacctccaacctcatacaaacctaagaaaactcaagattcgatcttatggcggcacaagatttccaggttggttggaagatctttctagtttatctaatttggtccatcttcgacttctggattgcggaaattgtttgtccttgccatcagttgagcagctaccctccctccaagtgctttcgattcaaggatttaatggagtggtgactgtgggttctaagccttttcctaatctacgtgagcttcgtctgaaatcttgtcccgaggtaaccggggcattcatgttagcctgcttcccaaagcttgaaagcctcgatttggaggatgtgaatgtagaatctcttcattccactacagtactcctctcccttggcggactcagaatatcttcatgcccaaattttgtttgttttcaagatggagggctgaatgcgcccaacttgaggtccataagagtcgagaaatgtccgaaattgaggtcattgccgcaacacatgcacaaccttctcccatctctcggctacttgtccctatctgattgtccagaattggaatcatttcccgaagggggattgccgtctaagttggaacgcttgttcatcctgtgctgcaagaaactcattggaaaccgtatgcagtggggtctaccaacactcacctctcttgaaatcttgagcgtcgacttttggggatgtgaacaagttgtagattcatttccagacgaggggctgctacccaccactctcggagaactctgcatctgcagtatttcgaagctggacggcaaggggtttacacaactcacctctcttaaacagttgggaattcacaattgccctgaactccggtgcttgcctgatgaagggctacccacttccctttcttctctggacatcaaggattgtcctttactagaacaacgttgccagagagagacaggggaagattggctcaagattgctcacatcaagaccatttatatcaatttcaaagatatatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

1082

Amino Acids

121.7

Weight (kDa)

5.61

Isoelectric Point (pI)

42.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000035)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G14470 AT3G14470
fragaria_vesca FvH4_1g01220 FvH4_1g01230 FvH4_3g24551 FvH4_3g24552 FvH4_4g29310 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_6g39860 FvH4_6g39861 FvH4_7g11380
malus_domestica MD00G1072900.v1.1 MD00G1073100.v1.1 MD00G1120600.v1.1 MD00G1120900.v1.1 MD00G1121000.v1.1 MD00G1121200.v1.1 MD00G1152300.v1.1 MD00G1203600.v1.1 MD00G1203700.v1.1 MD02G1250900.v1.1 MD02G1251900.v1.1 MD02G1252800.v1.1 MD02G1277100.v1.1 MD02G1277200.v1.1 MD02G1277400.v1.1 MD02G1286100.v1.1 MD02G1286200.v1.1 MD02G1286900.v1.1 MD03G1006200.v1.1 MD03G1015300.v1.1 MD03G1015500.v1.1 MD03G1015900.v1.1 MD03G1016000.v1.1 MD03G1024900.v1.1 MD03G1025000.v1.1 MD03G1025500.v1.1 MD03G1026000.v1.1 MD03G1026500.v1.1 MD03G1031800.v1.1 MD03G1072200.v1.1 MD07G1028000.v1.1 MD07G1028300.v1.1 MD07G1029400.v1.1 MD07G1029500.v1.1 MD07G1040300.v1.1 MD07G1044500.v1.1 MD07G1045100.v1.1 MD07G1045500.v1.1 MD07G1050700.v1.1 MD07G1050900.v1.1 MD07G1055800.v1.1 MD07G1056200.v1.1 MD07G1056600.v1.1 MD07G1057100.v1.1 MD07G1057200.v1.1 MD08G1056500.v1.1 MD08G1056600.v1.1 MD08G1056700.v1.1 MD08G1056800.v1.1 MD08G1128800.v1.1 MD08G1129500.v1.1 MD08G1130000.v1.1 MD11G1066700.v1.1 MD11G1066800.v1.1 MD11G1066900.v1.1 MD11G1067000.v1.1 MD11G1067500.v1.1 MD11G1069800.v1.1 MD11G1070400.v1.1 MD11G1071100.v1.1 MD11G1071200.v1.1 MD11G1077200.v1.1 MD11G1077700.v1.1 MD11G1077900.v1.1 MD11G1078100.v1.1 MD11G1078300.v1.1 MD11G1078500.v1.1 MD11G1135200.v1.1 MD11G1135400.v1.1 MD11G1152900.v1.1 MD11G1153000.v1.1 MD17G1056800.v1.1
prunus_persica Prupe.2G037800_v2.0.a1 Prupe.2G037800_v2.0.a1 Prupe.2G037800_v2.0.a1 Prupe.2G037800_v2.0.a1 Prupe.2G040500_v2.0.a1 Prupe.2G040700_v2.0.a1 Prupe.2G043000_v2.0.a1 Prupe.2G043100_v2.0.a1 Prupe.2G043200_v2.0.a1 Prupe.2G046000_v2.0.a1 Prupe.2G046300_v2.0.a1 Prupe.2G046400_v2.0.a1 Prupe.2G046400_v2.0.a1 Prupe.2G046700_v2.0.a1 Prupe.2G046900_v2.0.a1 Prupe.2G051100_v2.0.a1 Prupe.2G052200_v2.0.a1 Prupe.2G053600_v2.0.a1 Prupe.2G053600_v2.0.a1 Prupe.2G053600_v2.0.a1 Prupe.2G053600_v2.0.a1 Prupe.2G053700_v2.0.a1 Prupe.2G053800_v2.0.a1 Prupe.2G053900_v2.0.a1 Prupe.2G054000_v2.0.a1 Prupe.2G054100_v2.0.a1 Prupe.2G054200_v2.0.a1 Prupe.2G054300_v2.0.a1 Prupe.2G054300_v2.0.a1 Prupe.2G054300_v2.0.a1 Prupe.2G054300_v2.0.a1 Prupe.2G054500_v2.0.a1 Prupe.2G054700_v2.0.a1 Prupe.4G286000_v2.0.a1 Prupe.4G286000_v2.0.a1 Prupe.4G286000_v2.0.a1 Prupe.6G129800_v2.0.a1 Prupe.6G130000_v2.0.a1 Prupe.6G130000_v2.0.a1
pyrus_communis pycom02g23740 pycom02g23750 pycom02g24320 pycom03g00620 pycom03g01280 pycom03g01320 pycom03g01350 pycom03g01360 pycom03g01370 pycom03g01380 pycom03g01390 pycom03g02160 pycom03g02170 pycom03g05850 pycom03g09810 pycom07g02120 pycom07g02790 pycom07g02800 pycom07g03210 pycom07g03660 pycom07g03670 pycom07g04350 pycom08g10780 pycom08g10840 pycom08g10910 pycom11g05650 pycom11g05670 pycom11g05800 pycom11g05880 pycom11g05890 pycom11g05940 pycom11g06490 pycom11g06500 pycom11g06520 pycom11g06560 pycom11g06570 pycom11g11230 pycom11g13650 pycom17g05700
rosa_chinensis RchiOBHm_Chr1g0318341 RchiOBHm_Chr1g0318901 RchiOBHm_Chr1g0318931 RchiOBHm_Chr1g0327301 RchiOBHm_Chr1g0328491 RchiOBHm_Chr1g0336761 RchiOBHm_Chr1g0336831 RchiOBHm_Chr1g0340721 RchiOBHm_Chr1g0342461 RchiOBHm_Chr1g0342471 RchiOBHm_Chr1g0342481 RchiOBHm_Chr1g0346131 RchiOBHm_Chr1g0346191 RchiOBHm_Chr1g0346211 RchiOBHm_Chr1g0346241 RchiOBHm_Chr1g0346261 RchiOBHm_Chr1g0346281 RchiOBHm_Chr1g0346461 RchiOBHm_Chr1g0346471 RchiOBHm_Chr1g0346481 RchiOBHm_Chr1g0346501 RchiOBHm_Chr1g0347691 RchiOBHm_Chr1g0347701 RchiOBHm_Chr1g0347751 RchiOBHm_Chr1g0347791 RchiOBHm_Chr1g0347971 RchiOBHm_Chr1g0349661 RchiOBHm_Chr1g0349741 RchiOBHm_Chr1g0357561 RchiOBHm_Chr3g0492601 RchiOBHm_Chr5g0039181 RchiOBHm_Chr5g0039231 RchiOBHm_Chr5g0039241 RchiOBHm_Chr5g0039251 RchiOBHm_Chr5g0039531 RchiOBHm_Chr5g0044001 RchiOBHm_Chr5g0044571 RchiOBHm_Chr5g0044611 RchiOBHm_Chr5g0044631 RchiOBHm_Chr5g0044641 RchiOBHm_Chr5g0044651 RchiOBHm_Chr5g0044661 RchiOBHm_Chr5g0044681 RchiOBHm_Chr5g0045221 RchiOBHm_Chr5g0045901 RchiOBHm_Chr5g0045991 RchiOBHm_Chr5g0046001 RchiOBHm_Chr5g0046011
rosa_laevigata RLG00000028715 RLG00000028718 RLG00000029034 RLG00000029926 RLG00000030516 RLG00000034285 RLG00000034288
rosa_multiflora Rmu_co7987576.1_g000001 Rmu_co8028038.1_g000001 Rmu_co8104858.1_g000001 Rmu_co8185828.1_g000001 Rmu_co8227651.1_g000001 Rmu_co8235061.1_g000001 Rmu_co8246845.1_g000001 Rmu_co8254315.1_g000001 Rmu_co8284899.1_g000001 Rmu_co8401461.1_g000001 Rmu_co8475625.1_g000001 Rmu_co8502681.1_g000001 Rmu_sc0000250.1_g000005 Rmu_sc0000492.1_g000001 Rmu_sc0000533.1_g000004 Rmu_sc0000795.1_g000114 Rmu_sc0000831.1_g000039 Rmu_sc0000907.1_g000014 Rmu_sc0000907.1_g000034 Rmu_sc0001035.1_g000007 Rmu_sc0001035.1_g000011 Rmu_sc0001035.1_g000012 Rmu_sc0001099.1_g000003 Rmu_sc0001157.1_g000008 Rmu_sc0001212.1_g000016 Rmu_sc0001212.1_g000017 Rmu_sc0001304.1_g000027 Rmu_sc0001304.1_g000033 Rmu_sc0001773.1_g000019 Rmu_sc0001836.1_g000069 Rmu_sc0001856.1_g000004 Rmu_sc0002286.1_g000003 Rmu_sc0002286.1_g000004 Rmu_sc0002286.1_g000005 Rmu_sc0002286.1_g000007 Rmu_sc0002286.1_g000015 Rmu_sc0002495.1_g000025 Rmu_sc0002545.1_g000008 Rmu_sc0002545.1_g000009 Rmu_sc0002662.1_g000009 Rmu_sc0003363.1_g000019 Rmu_sc0003363.1_g000022 Rmu_sc0003600.1_g000057 Rmu_sc0003809.1_g000036 Rmu_sc0003809.1_g000037 Rmu_sc0005008.1_g000026 Rmu_sc0005008.1_g000028 Rmu_sc0005028.1_g000001 Rmu_sc0005144.1_g000022 Rmu_sc0005167.1_g000004 Rmu_sc0005626.1_g000005 Rmu_sc0005626.1_g000018 Rmu_sc0006228.1_g000011 Rmu_sc0006609.1_g000007 Rmu_sc0006609.1_g000009 Rmu_sc0006609.1_g000015 Rmu_sc0006609.1_g000016 Rmu_sc0006609.1_g000017 Rmu_sc0006609.1_g000018 Rmu_sc0007060.1_g000003 Rmu_sc0007318.1_g000011 Rmu_sc0007992.1_g000002 Rmu_sc0009172.1_g000001 Rmu_sc0010151.1_g000010 Rmu_sc0010151.1_g000011 Rmu_sc0011778.1_g000001 Rmu_sc0011778.1_g000005 Rmu_sc0011778.1_g000009 Rmu_sc0012293.1_g000001 Rmu_sc0012293.1_g000002 Rmu_sc0016606.1_g000001 Rmu_sc0016836.1_g000001 Rmu_sc0021084.1_g000008 Rmu_sc0021449.1_g000001 Rmu_sc0026523.1_g000001 Rmu_sc0027133.1_g000003 Rmu_sc0038674.1_g000001 Rmu_ssc0000255.1_g000053 Rmu_ssc0000255.1_g000063 Rmu_ssc0000255.1_g000064 Rmu_ssc0000263.1_g000004 Rmu_ssc0000400.1_g000027
rosa_roxburghii Rroxscaffold_1G00035290 Rroxscaffold_1G00036350 Rroxscaffold_1G00036360 Rroxscaffold_1G00036400 Rroxscaffold_1G00036460 Rroxscaffold_1G00037000 Rroxscaffold_1G00040440 Rroxscaffold_1G00041890 Rroxscaffold_1G00041920 Rroxscaffold_4G00307460 Rroxscaffold_4G00307500 Rroxscaffold_4G00308500 Rroxscaffold_4G00308510 Rroxscaffold_4G00308770 Rroxscaffold_4G00313020 Rroxscaffold_4G00321580 Rroxscaffold_4G00323030 Rroxscaffold_4G00326850 Rroxscaffold_4G00328770 Rroxscaffold_4G00328780 Rroxscaffold_4G00329310 Rroxscaffold_5G00352110
rosa_rugosa Rorug01G0020700 Rorug01G0023000 Rorug01G0023100 Rorug01G0023200 Rorug01G0023300 Rorug01G0023400 Rorug01G0024500 Rorug01G0025100 Rorug01G0025200 Rorug01G0025400 Rorug01G0025400 Rorug01G0064700 Rorug01G0065300 Rorug01G0127600 Rorug01G0128000 Rorug01G0148000.1 Rorug01G0150500.1 Rorug01G0161600.1 Rorug01G0161800.1 Rorug01G0163600.1 Rorug01G0178300 Rorug01G0178500 Rorug01G0178700 Rorug01G0179900 Rorug01G0180200 Rorug01G0180300 Rorug01G0180400 Rorug01G0189000 Rorug01G0189100 Rorug01G0190500 Rorug01G0204800 Rorug05G0177200 Rorug05G0210300 Rorug05G0210300 Rorug05G0210300 Rorug05G0215400 Rorug05G0215400 Rorug05G0215400 Rorug05G0215400 Rorug05G0215500 Rorug05G0215600 Rorug05G0215800 Rorug05G0215900 Rorug05G0215900 Rorug05G0216000 Rorug05G0216200 Rorug05G0216300 Rorug05G0221900 Rorug07G0276700
rosa_samantha Rh1BG028400 Rh1BG033500 Rh1BG065100 Rh1BG073100 Rh1BG073200 Rh1BG117000 Rh1BG164000 Rh1BG164200 Rh1BG172100 Rh1BG173900 Rh1BG174100 Rh1BG188400 Rh1CG036000 Rh1CG036500 Rh1CG089900 Rh1CG140200 Rh1CG164700 Rh1CG182600 Rh1CG182900 Rh1CG183400 Rh1CG191300 Rh1CG192000 Rh1CG207700 Rh1DG033800 Rh1DG033900 Rh1DG096000 Rh5AG299900 Rh5AG304500 Rh5AG307100 Rh5AG307500 Rh5CG301600 Rh5CG329800 Rh5CG333800 Rh5DG311400 Rh5DG316300 Rh5DG316400 Rh5DG316700 Rh5DG316800 Rh5DG316900 Rh5DG326100 Rh7AG431900 Rh7CG451000
rosa_wichuraiana Rw0G007840 Rw0G009850 Rw0G013000 Rw0G015090 Rw0G021190 Rw1G002610 Rw1G004320 Rw1G006520 Rw1G007250 Rw1G012020 Rw1G013830 Rw1G014770 Rw1G016300 Rw1G016600 Rw1G016650 Rw1G017290 Rw1G017420 Rw1G017630 Rw1G017650 Rw1G017660 Rw1G017690 Rw1G017700 Rw1G018960 Rw5G024660 Rw5G024700 Rw5G024720 Rw5G024740 Rw5G024980 Rw5G027710 Rw5G027720 Rw5G027730 Rw5G027740 Rw5G027750 Rw5G028130 Rw5G028740 Rw5G028750 Rw5G028790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1686
AatII GACGTC 1 cut(s) 1826
Acc16I TGCGCA 1 cut(s) 2127
Acc65I GGTACC 1 cut(s) 965
AccB1I GGYRCC 1 cut(s) 965
AccI GTMKAC 3 cut(s) 648, 2893, 2928
AccII CGCG 1 cut(s) 2091
AciI CCGC 9 cut(s) 111, 563, 749, 1605, 2091, 2298, 2373, 2622, 2735
AclI AACGTT 1 cut(s) 3169
AclWI GGATC 2 cut(s) 885, 1338
AcsI RAATTY 5 cut(s) 710, 827, 1936, 2647, 3072
AcuI CTGAAG 5 cut(s) 294, 1292, 1374, 1736, 2063
AcyI GRCGYC 1 cut(s) 1823
AfaI GTAC 7 cut(s) 333, 967, 1449, 1676, 1686, 1855, 2607
AflII CTTAAG 1 cut(s) 883
AflIII ACRYGT 2 cut(s) 935, 1681
AjiI CACGTC 2 cut(s) 938, 1682
AjnI CCWGG 2 cut(s) 383, 2311
AjuI GAANNNNNNNTTGG 2 cut(s) 2153, 2185
AloI GAACNNNNNNTCC 2 cut(s) 2828, 2860
Alw21I GWGCWC 2 cut(s) 1740, 1755
Alw26I GTCTC 5 cut(s) 803, 1516, 1814, 2141, 3176
AlwI GGATC 2 cut(s) 885, 1338
Ama87I CYCGRG 2 cut(s) 2107, 2510
AoxI GGCC 1 cut(s) 540
ApeKI GCWGC 8 cut(s) 118, 315, 318, 1121, 1768, 2404, 2856, 2977
ApoI RAATTY 5 cut(s) 710, 827, 1936, 2647, 3072
ArsI GACNNNNNNTTYG 2 cut(s) 2711, 2743
AseI ATTAAT 1 cut(s) 1931
Asp700I GAANNNNTTC 3 cut(s) 2589, 2635, 2805
Asp718I GGTACC 1 cut(s) 965
AspLEI GCGC 4 cut(s) 1465, 2091, 2128, 2683
AspS9I GGNCC 2 cut(s) 2350, 2694
AsuC2I CCSGG 1 cut(s) 2521
AsuHPI GGTGA 6 cut(s) 1775, 2036, 2219, 2464, 2896, 3043
AsuII TTCGAA 1 cut(s) 3020
AvaI CYCGRG 2 cut(s) 2107, 2510
AvaII GGWCC 2 cut(s) 2350, 2694
BaeI ACNNNNGTAYC 2 cut(s) 323, 356
BanI GGYRCC 1 cut(s) 965
BarI GAAGNNNNNNTAC 6 cut(s) 954, 986, 1347, 1379, 2574, 2606
BbsI GAAGAC 3 cut(s) 110, 484, 1385
Bbv12I GWGCWC 2 cut(s) 1740, 1755
BbvI GCAGC 8 cut(s) 105, 327, 330, 1108, 1755, 2416, 2843, 2964
BceAI ACGGC 2 cut(s) 2809, 3046
BcgI CGANNNNNNTGC 2 cut(s) 1047, 1081
BciT130I CCWGG 2 cut(s) 385, 2313
BclI TGATCA 1 cut(s) 1612
BcnI CCSGG 1 cut(s) 2521
BcoDI GTCTC 5 cut(s) 803, 1516, 1814, 2141, 3176
BfmI CTRYAG 3 cut(s) 1056, 2601, 3010
BfrI CTTAAG 1 cut(s) 883
BglII AGATCT 4 cut(s) 1060, 1357, 2005, 2326
BmcAI AGTACT 1 cut(s) 2607
Bme1390I CCNGG 3 cut(s) 385, 2313, 2521
Bme18I GGWCC 2 cut(s) 2350, 2694
BmeT110I CYCGRG 2 cut(s) 2107, 2510
BmgBI CACGTC 2 cut(s) 938, 1682
BmgT120I GGNCC 2 cut(s) 2350, 2694
BmiI GGNNCC 2 cut(s) 381, 967
BmrFI CCNGG 3 cut(s) 385, 2313, 2521
BmsI GCATC 8 cut(s) 160, 1585, 1607, 1804, 1968, 2112, 2128, 3015
BoxI GACNNNNGTC 1 cut(s) 372
BpiI GAAGAC 3 cut(s) 110, 484, 1385
BplI GAGNNNNNCTC 2 cut(s) 15, 47
BpmI CTGGAG 2 cut(s) 1536, 2264
Bpu14I TTCGAA 1 cut(s) 3020
BpuEI CTTGAG 6 cut(s) 320, 1290, 2264, 2710, 2941, 3185
BpuMI CCSGG 1 cut(s) 2521
BsaAI YACGTR 1 cut(s) 2486
BsaHI GRCGYC 1 cut(s) 1823
BsaI GGTCTC 1 cut(s) 2141
BsaJI CCNNGG 7 cut(s) 94, 383, 1985, 2142, 2511, 2520, 2617
BsaWI WCCGGW 3 cut(s) 76, 1327, 3093
BsaXI ACNNNNNCTCC 4 cut(s) 800, 830, 2400, 2430
Bse1I ACTGG 2 cut(s) 580, 2053
Bse3DI GCAATG 1 cut(s) 2729
BseBI CCWGG 2 cut(s) 385, 2313
BseDI CCNNGG 7 cut(s) 94, 383, 1985, 2142, 2511, 2520, 2617
BseMI GCAATG 1 cut(s) 2729
BseMII CTCAG 5 cut(s) 202, 210, 990, 1809, 2641
BseNI ACTGG 2 cut(s) 580, 2053
BseRI GAGGAG 2 cut(s) 191, 2600
BseXI GCAGC 8 cut(s) 105, 327, 330, 1108, 1755, 2416, 2843, 2964
BseYI CCCAGC 1 cut(s) 113
Bsh1236I CGCG 1 cut(s) 2091
BshFI GGCC 1 cut(s) 542
BshNI GGYRCC 1 cut(s) 965
BsiHKAI GWGCWC 2 cut(s) 1740, 1755
BsiHKCI CYCGRG 2 cut(s) 2107, 2510
BsiSI CCGG 4 cut(s) 77, 1328, 2520, 3094
BslFI GGGAC 4 cut(s) 1634, 1674, 2493, 2761
BsmAI GTCTC 5 cut(s) 803, 1516, 1814, 2141, 3176
BsmBI CGTCTC 2 cut(s) 803, 1814
BsmFI GGGAC 4 cut(s) 1634, 1674, 2493, 2761
BsmI GAATGC 2 cut(s) 2525, 2683
BsnI GGCC 1 cut(s) 542
Bso31I GGTCTC 1 cut(s) 2141
BsoBI CYCGRG 2 cut(s) 2107, 2510
Bsp119I TTCGAA 1 cut(s) 3020
Bsp1286I GDGCHC 2 cut(s) 1740, 1755
BspACI CCGC 9 cut(s) 111, 563, 749, 1605, 2091, 2298, 2373, 2622, 2735
BspANI GGCC 1 cut(s) 542
BspCNI CTCAG 5 cut(s) 201, 211, 991, 1810, 2640
BspFNI CGCG 1 cut(s) 2091
BspHI TCATGA 2 cut(s) 358, 940
BspLI GGNNCC 2 cut(s) 381, 967
BspMAI CTGCAG 2 cut(s) 1060, 3014
BspPI GGATC 2 cut(s) 885, 1338
BspT104I TTCGAA 1 cut(s) 3020
BspT107I GGYRCC 1 cut(s) 965
BspTI CTTAAG 1 cut(s) 883
BspTNI GGTCTC 1 cut(s) 2141
BsrDI GCAATG 1 cut(s) 2729
BsrI ACTGG 2 cut(s) 580, 2053
BssECI CCNNGG 7 cut(s) 94, 383, 1985, 2142, 2511, 2520, 2617
BssNAI GTATAC 1 cut(s) 649
BssNI GRCGYC 1 cut(s) 1823
BssT1I CCWWGG 3 cut(s) 1985, 2142, 2617
Bst1107I GTATAC 1 cut(s) 649
Bst2UI CCWGG 2 cut(s) 385, 2313
Bst4CI ACNGT 8 cut(s) 859, 1292, 1368, 1625, 2458, 2605, 2879, 3066
Bst6I CTCTTC 3 cut(s) 40, 498, 2595
BstACI GRCGYC 1 cut(s) 1823
BstAFI CTTAAG 1 cut(s) 883
BstAPI GCANNNNNTGC 1 cut(s) 2743
BstBAI YACGTR 1 cut(s) 2486
BstBI TTCGAA 1 cut(s) 3020
BstC8I GCNNGC 4 cut(s) 955, 1233, 2539, 3101
BstEII GGTNACC 1 cut(s) 2515
BstENI CCTNNNNNAGG 1 cut(s) 3108
BstFNI CGCG 1 cut(s) 2091
BstHHI GCGC 4 cut(s) 1465, 2091, 2128, 2683
BstMAI GTCTC 5 cut(s) 803, 1516, 1814, 2141, 3176
BstMWI GCNNNNNNNGC 6 cut(s) 220, 1575, 1604, 1801, 2680, 2743
BstNI CCWGG 2 cut(s) 385, 2313
BstNSI RCATGY 4 cut(s) 790, 1034, 2132, 2746
BstPAI GACNNNNGTC 1 cut(s) 372
BstPI GGTNACC 1 cut(s) 2515
BstSCI CCNGG 3 cut(s) 383, 2311, 2519
BstSFI CTRYAG 3 cut(s) 1056, 2601, 3010
BstUI CGCG 1 cut(s) 2091
BstV1I GCAGC 8 cut(s) 105, 327, 330, 1108, 1755, 2416, 2843, 2964
BstV2I GAAGAC 3 cut(s) 110, 484, 1385
BstX2I RGATCY 6 cut(s) 877, 1060, 1330, 1357, 2005, 2326
BstXI CCANNNNNNTGG 2 cut(s) 391, 1239
BstYI RGATCY 6 cut(s) 877, 1060, 1330, 1357, 2005, 2326
BstZ17I GTATAC 1 cut(s) 649
BsuRI GGCC 1 cut(s) 542
BtrI CACGTC 2 cut(s) 938, 1682
BtsI GCAGTG 1 cut(s) 2891
BtsIMutI CAGTG 2 cut(s) 2046, 2891
Cac8I GCNNGC 4 cut(s) 955, 1233, 2539, 3101
CciI TCATGA 2 cut(s) 358, 940
CfoI GCGC 4 cut(s) 1465, 2091, 2128, 2683
Cfr13I GGNCC 2 cut(s) 2350, 2694
CseI GACGC 2 cut(s) 1931, 2914
Csp6I GTAC 7 cut(s) 332, 966, 1448, 1675, 1685, 1854, 2606
CviQI GTAC 7 cut(s) 332, 966, 1448, 1675, 1685, 1854, 2606
DrdI GACNNNNNNGTC 1 cut(s) 1686
DseDI GACNNNNNNGTC 1 cut(s) 1686
Eam1104I CTCTTC 3 cut(s) 40, 498, 2595
EarI CTCTTC 3 cut(s) 40, 498, 2595
EciI GGCGGA 1 cut(s) 2637
Eco130I CCWWGG 3 cut(s) 1985, 2142, 2617
Eco31I GGTCTC 1 cut(s) 2141
Eco47I GGWCC 2 cut(s) 2350, 2694
Eco57I CTGAAG 5 cut(s) 294, 1292, 1374, 1736, 2063
Eco88I CYCGRG 2 cut(s) 2107, 2510
Eco91I GGTNACC 1 cut(s) 2515
EcoNI CCTNNNNNAGG 1 cut(s) 3108
EcoO65I GGTNACC 1 cut(s) 2515
EcoRI GAATTC 1 cut(s) 3072
EcoRII CCWGG 2 cut(s) 383, 2311
EcoT14I CCWWGG 3 cut(s) 1985, 2142, 2617
EcoT22I ATGCAT 2 cut(s) 1482, 1600
ErhI CCWWGG 3 cut(s) 1985, 2142, 2617
Esp3I CGTCTC 2 cut(s) 803, 1814
FalI AAGNNNNNCTT 2 cut(s) 423, 455
FaqI GGGAC 4 cut(s) 1634, 1674, 2493, 2761
FauNDI CATATG 1 cut(s) 1196
FbaI TGATCA 1 cut(s) 1612
FblI GTMKAC 3 cut(s) 648, 2893, 2928
FspI TGCGCA 1 cut(s) 2127
GlaI GCGC 4 cut(s) 1464, 2090, 2127, 2682
GsaI CCCAGC 1 cut(s) 117
GsuI CTGGAG 2 cut(s) 1536, 2264
HaeIII GGCC 1 cut(s) 542
HapII CCGG 4 cut(s) 77, 1328, 2520, 3094
HgaI GACGC 2 cut(s) 1931, 2914
HhaI GCGC 4 cut(s) 1465, 2091, 2128, 2683
Hin1I GRCGYC 1 cut(s) 1823
Hin6I GCGC 4 cut(s) 1463, 2089, 2126, 2681
HinP1I GCGC 4 cut(s) 1463, 2089, 2126, 2681
HincII GTYRAC 4 cut(s) 85, 424, 980, 2929
HindII GTYRAC 4 cut(s) 85, 424, 980, 2929
HindIII AAGCTT 2 cut(s) 1718, 2549
HpaII CCGG 4 cut(s) 77, 1328, 2520, 3094
HphI GGTGA 6 cut(s) 1775, 2036, 2219, 2464, 2896, 3043
Hpy99I CGWCG 3 cut(s) 1372, 2219, 2930
HpyAV CCTTC 7 cut(s) 516, 980, 1045, 1952, 2762, 2807, 3104
HpyCH4III ACNGT 8 cut(s) 859, 1292, 1368, 1625, 2458, 2605, 2879, 3066
HpyCH4IV ACGT 8 cut(s) 812, 937, 1681, 1687, 1823, 1874, 2485, 3169
HpyF10VI GCNNNNNNNGC 6 cut(s) 220, 1575, 1604, 1801, 2680, 2743
HpySE526I ACGT 8 cut(s) 812, 937, 1681, 1687, 1823, 1874, 2485, 3169
Hsp92I GRCGYC 1 cut(s) 1823
HspAI GCGC 4 cut(s) 1463, 2089, 2126, 2681
KpnI GGTACC 1 cut(s) 969
Ksp22I TGATCA 1 cut(s) 1612
LmnI GCTCC 2 cut(s) 23, 126
Lsp1109I GCAGC 8 cut(s) 105, 327, 330, 1108, 1755, 2416, 2843, 2964
LweI GCATC 8 cut(s) 160, 1585, 1607, 1804, 1968, 2112, 2128, 3015
MaeII ACGT 8 cut(s) 812, 937, 1681, 1687, 1823, 1874, 2485, 3169
MfeI CAATTG 3 cut(s) 600, 1608, 3079
MflI RGATCY 6 cut(s) 877, 1060, 1330, 1357, 2005, 2326
MhlI GDGCHC 2 cut(s) 1740, 1755
MlyI GAGTC 7 cut(s) 210, 515, 672, 1104, 1582, 2619, 2712
MmeI TCCRAC 6 cut(s) 1378, 1515, 1536, 2278, 2301, 2814
Mph1103I ATGCAT 2 cut(s) 1482, 1600
MroXI GAANNNNTTC 3 cut(s) 2589, 2635, 2805
MslI CAYNNNNRTG 2 cut(s) 246, 945
MspA1I CMGCKG 1 cut(s) 113
MspCI CTTAAG 1 cut(s) 883
MspI CCGG 4 cut(s) 77, 1328, 2520, 3094
MspR9I CCNGG 3 cut(s) 385, 2313, 2521
MunI CAATTG 3 cut(s) 600, 1608, 3079
Mva1269I GAATGC 2 cut(s) 2525, 2683
MvaI CCWGG 2 cut(s) 385, 2313
MvnI CGCG 1 cut(s) 2091
MwoI GCNNNNNNNGC 6 cut(s) 220, 1575, 1604, 1801, 2680, 2743
NciI CCSGG 1 cut(s) 2521
NdeI CATATG 1 cut(s) 1196
NlaIV GGNNCC 2 cut(s) 381, 967
NmeAIII GCCGAG 1 cut(s) 2745
NmuCI GTSAC 7 cut(s) 571, 751, 859, 928, 2131, 2207, 2452
NsbI TGCGCA 1 cut(s) 2127
NsiI ATGCAT 2 cut(s) 1482, 1600
NspI RCATGY 4 cut(s) 790, 1034, 2132, 2746
NspV TTCGAA 1 cut(s) 3020
PagI TCATGA 2 cut(s) 358, 940
PcsI WCGNNNNNNNCGW 1 cut(s) 2491
PctI GAATGC 2 cut(s) 2525, 2683
PdmI GAANNNNTTC 3 cut(s) 2589, 2635, 2805
PfeI GAWTC 9 cut(s) 305, 388, 1267, 1895, 2284, 2431, 2585, 2801, 2957
PflFI GACNNNGTC 3 cut(s) 662, 814, 1487
PleI GAGTC 7 cut(s) 209, 514, 671, 1104, 1581, 2619, 2711
PpsI GAGTC 7 cut(s) 209, 514, 671, 1104, 1581, 2619, 2711
Ppu21I YACGTR 1 cut(s) 2486
PshAI GACNNNNGTC 1 cut(s) 372
PshBI ATTAAT 1 cut(s) 1931
Psp1406I AACGTT 1 cut(s) 3169
Psp6I CCWGG 2 cut(s) 383, 2311
PspEI GGTNACC 1 cut(s) 2515
PspFI CCCAGC 1 cut(s) 113
PspGI CCWGG 2 cut(s) 383, 2311
PspN4I GGNNCC 2 cut(s) 381, 967
PspPI GGNCC 2 cut(s) 2350, 2694
PstI CTGCAG 2 cut(s) 1060, 3014
PsuI RGATCY 6 cut(s) 877, 1060, 1330, 1357, 2005, 2326
PsyI GACNNNGTC 3 cut(s) 662, 814, 1487
RsaI GTAC 7 cut(s) 333, 967, 1449, 1676, 1686, 1855, 2607
RsaNI GTAC 7 cut(s) 332, 966, 1448, 1675, 1685, 1854, 2606
RseI CAYNNNNRTG 2 cut(s) 246, 945
SalI GTCGAC 1 cut(s) 2927
Sau96I GGNCC 2 cut(s) 2350, 2694
ScaI AGTACT 1 cut(s) 2607
SchI GAGTC 7 cut(s) 210, 515, 672, 1104, 1582, 2619, 2712
ScrFI CCNGG 3 cut(s) 385, 2313, 2521
SduI GDGCHC 2 cut(s) 1740, 1755
SfaNI GCATC 8 cut(s) 160, 1585, 1607, 1804, 1968, 2112, 2128, 3015
SfcI CTRYAG 3 cut(s) 1056, 2601, 3010
SfuI TTCGAA 1 cut(s) 3020
SinI GGWCC 2 cut(s) 2350, 2694
SmiMI CAYNNNNRTG 2 cut(s) 246, 945
SmlI CTYRAG 7 cut(s) 335, 883, 1305, 2279, 2689, 2920, 3200
SmoI CTYRAG 7 cut(s) 335, 883, 1305, 2279, 2689, 2920, 3200
SsiI CCGC 9 cut(s) 111, 563, 749, 1605, 2091, 2298, 2373, 2622, 2735
SspI AATATT 2 cut(s) 1162, 2122
StyD4I CCNGG 3 cut(s) 383, 2311, 2519
StyI CCWWGG 3 cut(s) 1985, 2142, 2617
TaaI ACNGT 8 cut(s) 859, 1292, 1368, 1625, 2458, 2605, 2879, 3066
TaiI ACGT 8 cut(s) 815, 940, 1684, 1690, 1826, 1877, 2488, 3172
TatI WGTACW 2 cut(s) 1853, 2605
TauI GCSGC 3 cut(s) 1607, 2301, 2737
TfiI GAWTC 9 cut(s) 305, 388, 1267, 1895, 2284, 2431, 2585, 2801, 2957
TscAI CASTG 2 cut(s) 2053, 2891
TseFI GTSAC 7 cut(s) 571, 751, 859, 928, 2131, 2207, 2452
TseI GCWGC 8 cut(s) 118, 315, 318, 1121, 1768, 2404, 2856, 2977
Tsp45I GTSAC 7 cut(s) 571, 751, 859, 928, 2131, 2207, 2452
TspGWI ACGGA 2 cut(s) 602, 1692
TspRI CASTG 2 cut(s) 2053, 2891
Tth111I GACNNNGTC 3 cut(s) 662, 814, 1487
Vha464I CTTAAG 1 cut(s) 883
VpaK11BI GGWCC 2 cut(s) 2350, 2694
VspI ATTAAT 1 cut(s) 1931
XagI CCTNNNNNAGG 1 cut(s) 3108
XapI RAATTY 5 cut(s) 710, 827, 1936, 2647, 3072
XbaI TCTAGA 1 cut(s) 197
XceI RCATGY 4 cut(s) 790, 1034, 2132, 2746
XcmI CCANNNNNNNNNTGG 1 cut(s) 493
XmiI GTMKAC 3 cut(s) 648, 2893, 2928
XmnI GAANNNNTTC 3 cut(s) 2589, 2635, 2805
ZraI GACGTC 1 cut(s) 1824
ZrmI AGTACT 1 cut(s) 2607
Zsp2I ATGCAT 2 cut(s) 1482, 1600
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.