Belongs to the disease resistance NB-LRR family
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_3 | PF14244 | 24 - 61 | 9.6e-07 | gag-polypeptide of LTR copia-type |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 291 |
| AcsI | RAATTY | 2 cut(s) | 188, 267 |
| AfaI | GTAC | 3 cut(s) | 63, 75, 116 |
| AgsI | TTSAA | 1 cut(s) | 82 |
| AleI | CACNNNNGTG | 1 cut(s) | 175 |
| AluBI | AGCT | 1 cut(s) | 261 |
| AluI | AGCT | 1 cut(s) | 261 |
| AlwI | GGATC | 1 cut(s) | 291 |
| Ama87I | CYCGRG | 1 cut(s) | 173 |
| ApeKI | GCWGC | 1 cut(s) | 5 |
| ApoI | RAATTY | 2 cut(s) | 188, 267 |
| AseI | ATTAAT | 1 cut(s) | 252 |
| AspS9I | GGNCC | 1 cut(s) | 33 |
| AsuHPI | GGTGA | 1 cut(s) | 118 |
| AsuII | TTCGAA | 1 cut(s) | 56 |
| AvaI | CYCGRG | 1 cut(s) | 173 |
| AvaII | GGWCC | 1 cut(s) | 33 |
| BaeGI | GKGCMC | 1 cut(s) | 182 |
| BccI | CCATC | 1 cut(s) | 158 |
| BisI | GCNGC | 1 cut(s) | 6 |
| BlsI | GCNGC | 1 cut(s) | 7 |
| Bme18I | GGWCC | 1 cut(s) | 33 |
| BmeT110I | CYCGRG | 1 cut(s) | 173 |
| BmgT120I | GGNCC | 1 cut(s) | 33 |
| BmsI | GCATC | 1 cut(s) | 285 |
| Bpu14I | TTCGAA | 1 cut(s) | 56 |
| BpuEI | CTTGAG | 1 cut(s) | 119 |
| BsaAI | YACGTR | 1 cut(s) | 118 |
| BsaJI | CCNNGG | 1 cut(s) | 151 |
| Bse3DI | GCAATG | 1 cut(s) | 352 |
| BseDI | CCNNGG | 1 cut(s) | 151 |
| BseGI | GGATG | 2 cut(s) | 169, 329 |
| BseMI | GCAATG | 1 cut(s) | 352 |
| BseMII | CTCAG | 1 cut(s) | 174 |
| BseRI | GAGGAG | 1 cut(s) | 140 |
| BseSI | GKGCMC | 1 cut(s) | 182 |
| BsgI | GTGCAG | 1 cut(s) | 295 |
| BsiHKCI | CYCGRG | 1 cut(s) | 173 |
| BsoBI | CYCGRG | 1 cut(s) | 173 |
| Bsp119I | TTCGAA | 1 cut(s) | 56 |
| Bsp1286I | GDGCHC | 1 cut(s) | 182 |
| Bsp1407I | TGTACA | 1 cut(s) | 61 |
| Bsp143I | GATC | 2 cut(s) | 46, 283 |
| BspCNI | CTCAG | 1 cut(s) | 175 |
| BspPI | GGATC | 1 cut(s) | 291 |
| BspT104I | TTCGAA | 1 cut(s) | 56 |
| BsrDI | GCAATG | 1 cut(s) | 352 |
| BsrGI | TGTACA | 1 cut(s) | 61 |
| BssECI | CCNNGG | 1 cut(s) | 151 |
| BssMI | GATC | 2 cut(s) | 46, 283 |
| BstAUI | TGTACA | 1 cut(s) | 61 |
| BstBAI | YACGTR | 1 cut(s) | 118 |
| BstBI | TTCGAA | 1 cut(s) | 56 |
| BstDEI | CTNAG | 2 cut(s) | 183, 287 |
| BstF5I | GGATG | 2 cut(s) | 169, 329 |
| BstKTI | GATC | 2 cut(s) | 49, 286 |
| BstMBI | GATC | 2 cut(s) | 46, 283 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 49 |
| BstSLI | GKGCMC | 1 cut(s) | 182 |
| BstSNI | TACGTA | 1 cut(s) | 118 |
| BstX2I | RGATCY | 1 cut(s) | 283 |
| BstYI | RGATCY | 1 cut(s) | 283 |
| BtsCI | GGATG | 2 cut(s) | 169, 329 |
| Cfr13I | GGNCC | 1 cut(s) | 33 |
| Csp6I | GTAC | 3 cut(s) | 62, 74, 115 |
| CviAII | CATG | 1 cut(s) | 337 |
| CviJI | RGCY | 4 cut(s) | 5, 140, 156, 261 |
| CviKI_1 | RGCY | 4 cut(s) | 5, 140, 156, 261 |
| CviQI | GTAC | 3 cut(s) | 62, 74, 115 |
| DdeI | CTNAG | 2 cut(s) | 183, 287 |
| DpnI | GATC | 2 cut(s) | 48, 285 |
| DpnII | GATC | 2 cut(s) | 46, 283 |
| Eco105I | TACGTA | 1 cut(s) | 118 |
| Eco47I | GGWCC | 1 cut(s) | 33 |
| Eco88I | CYCGRG | 1 cut(s) | 173 |
| FaeI | CATG | 1 cut(s) | 340 |
| FaiI | YATR | 7 cut(s) | 131, 264, 314, 325, 327, 338, 361 |
| FatI | CATG | 1 cut(s) | 336 |
| Fnu4HI | GCNGC | 1 cut(s) | 6 |
| FokI | GGATG | 2 cut(s) | 176, 316 |
| Fsp4HI | GCNGC | 1 cut(s) | 6 |
| GluI | GCNGC | 1 cut(s) | 6 |
| Hin1II | CATG | 1 cut(s) | 340 |
| HinfI | GANTC | 2 cut(s) | 198, 221 |
| HphI | GGTGA | 1 cut(s) | 118 |
| Hpy166II | GTNNAC | 2 cut(s) | 64, 170 |
| Hpy188I | TCNGA | 1 cut(s) | 37 |
| Hpy188III | TCNNGA | 1 cut(s) | 202 |
| Hpy8I | GTNNAC | 2 cut(s) | 64, 170 |
| Hpy99I | CGWCG | 1 cut(s) | 212 |
| HpyAV | CCTTC | 1 cut(s) | 88 |
| HpyCH4IV | ACGT | 1 cut(s) | 117 |
| HpyCH4V | TGCA | 1 cut(s) | 276 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 49 |
| HpyF3I | CTNAG | 2 cut(s) | 183, 287 |
| HpySE526I | ACGT | 1 cut(s) | 117 |
| Hsp92II | CATG | 1 cut(s) | 340 |
| Kzo9I | GATC | 2 cut(s) | 46, 283 |
| LmnI | GCTCC | 1 cut(s) | 13 |
| LpnPI | CCDG | 3 cut(s) | 57, 195, 215 |
| LweI | GCATC | 1 cut(s) | 285 |
| MaeII | ACGT | 1 cut(s) | 117 |
| MalI | GATC | 2 cut(s) | 48, 285 |
| MboI | GATC | 2 cut(s) | 46, 283 |
| MboII | GAAGA | 1 cut(s) | 94 |
| MflI | RGATCY | 1 cut(s) | 283 |
| MhlI | GDGCHC | 1 cut(s) | 182 |
| MluCI | AATT | 5 cut(s) | 13, 38, 83, 188, 267 |
| MlyI | GAGTC | 1 cut(s) | 207 |
| MnlI | CCTC | 4 cut(s) | 28, 105, 161, 274 |
| MseI | TTAA | 1 cut(s) | 252 |
| MslI | CAYNNNNRTG | 1 cut(s) | 175 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 49 |
| NdeII | GATC | 2 cut(s) | 46, 283 |
| NlaIII | CATG | 1 cut(s) | 340 |
| NmeAIII | GCCGAG | 1 cut(s) | 132 |
| NspV | TTCGAA | 1 cut(s) | 56 |
| OliI | CACNNNNGTG | 1 cut(s) | 175 |
| PaeR7I | CTCGAG | 1 cut(s) | 173 |
| PfeI | GAWTC | 1 cut(s) | 221 |
| PkrI | GCNGC | 1 cut(s) | 7 |
| PleI | GAGTC | 1 cut(s) | 206 |
| PpsI | GAGTC | 1 cut(s) | 206 |
| Ppu21I | YACGTR | 1 cut(s) | 118 |
| PshBI | ATTAAT | 1 cut(s) | 252 |
| PspPI | GGNCC | 1 cut(s) | 33 |
| PspXI | VCTCGAGB | 1 cut(s) | 173 |
| PsuI | RGATCY | 1 cut(s) | 283 |
| RsaI | GTAC | 3 cut(s) | 63, 75, 116 |
| RsaNI | GTAC | 3 cut(s) | 62, 74, 115 |
| RseI | CAYNNNNRTG | 1 cut(s) | 175 |
| SaqAI | TTAA | 1 cut(s) | 252 |
| SatI | GCNGC | 1 cut(s) | 6 |
| Sau3AI | GATC | 2 cut(s) | 46, 283 |
| Sau96I | GGNCC | 1 cut(s) | 33 |
| SchI | GAGTC | 1 cut(s) | 207 |
| SduI | GDGCHC | 1 cut(s) | 182 |
| SetI | ASST | 4 cut(s) | 35, 116, 120, 263 |
| SfaNI | GCATC | 1 cut(s) | 285 |
| Sfr274I | CTCGAG | 1 cut(s) | 173 |
| SfuI | TTCGAA | 1 cut(s) | 56 |
| SinI | GGWCC | 1 cut(s) | 33 |
| SlaI | CTCGAG | 1 cut(s) | 173 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 175 |
| SmlI | CTYRAG | 2 cut(s) | 134, 173 |
| SmoI | CTYRAG | 2 cut(s) | 134, 173 |
| SnaBI | TACGTA | 1 cut(s) | 118 |
| Sse9I | AATT | 5 cut(s) | 13, 38, 83, 188, 267 |
| TaiI | ACGT | 1 cut(s) | 120 |
| TaqI | TCGA | 3 cut(s) | 56, 174, 196 |
| TasI | AATT | 5 cut(s) | 13, 38, 83, 188, 267 |
| TatI | WGTACW | 1 cut(s) | 61 |
| TfiI | GAWTC | 1 cut(s) | 221 |
| Tru1I | TTAA | 1 cut(s) | 252 |
| Tru9I | TTAA | 1 cut(s) | 252 |
| TseI | GCWGC | 1 cut(s) | 5 |
| TspDTI | ATGAA | 3 cut(s) | 228, 279, 292 |
| VpaK11BI | GGWCC | 1 cut(s) | 33 |
| VspI | ATTAAT | 1 cut(s) | 252 |
| XapI | RAATTY | 2 cut(s) | 188, 267 |
| XhoI | CTCGAG | 1 cut(s) | 173 |