Belongs to the disease resistance NB-LRR family
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Rx_N | PF18052 | 11 - 105 | 2.7e-19 | Rx N-terminal domain |
| NB-ARC | PF00931 | 187 - 241 | 9.6e-12 | NB-ARC domain |
| NB-ARC | PF00931 | 244 - 319 | 8.1e-12 | NB-ARC domain |
| WHD_DRP | PF23559 | 405 - 472 | 1.3e-26 | Disease resistance protein Winged helix domain |
| LRR_14 | PF23598 | 563 - 727 | 6.4e-16 | Leucine-rich repeat region |
| LRR_Zer-1 | PF25013 | 564 - 642 | 1.1e-06 | Zer-1-like, Leucine-rich repeats |
| LRR_R13L1-DRL21 | PF25019 | 657 - 735 | 2.7e-13 | R13L1/DRL21 LRRs |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 2 cut(s) | 648, 1616 |
| Acc36I | ACCTGC | 1 cut(s) | 261 |
| Acc65I | GGTACC | 1 cut(s) | 337 |
| AccB1I | GGYRCC | 1 cut(s) | 337 |
| AccI | GTMKAC | 3 cut(s) | 84, 657, 1136 |
| AccII | CGCG | 2 cut(s) | 96, 173 |
| AccIII | TCCGGA | 1 cut(s) | 2204 |
| AclI | AACGTT | 1 cut(s) | 1781 |
| AclWI | GGATC | 1 cut(s) | 1920 |
| AcsI | RAATTY | 8 cut(s) | 368, 419, 719, 1232, 1433, 1583, 2029, 2836 |
| AcuI | CTGAAG | 3 cut(s) | 294, 1290, 1967 |
| AfaI | GTAC | 9 cut(s) | 339, 527, 886, 1325, 1762, 1996, 2195, 2542, 2867 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 614, 960, 2573, 2858 |
| AflII | CTTAAG | 1 cut(s) | 2177 |
| AflIII | ACRYGT | 2 cut(s) | 854, 865 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2379 |
| AjnI | CCWGG | 2 cut(s) | 1636, 2775 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 938, 970 |
| Alw21I | GWGCWC | 2 cut(s) | 165, 2733 |
| Alw26I | GTCTC | 5 cut(s) | 542, 1053, 1828, 2096, 2319 |
| AlwI | GGATC | 1 cut(s) | 1920 |
| Ama87I | CYCGRG | 1 cut(s) | 2478 |
| Aor13HI | TCCGGA | 1 cut(s) | 2204 |
| AoxI | GGCC | 3 cut(s) | 66, 2219, 2481 |
| ApeKI | GCWGC | 7 cut(s) | 142, 242, 315, 318, 321, 649, 1040 |
| ApoI | RAATTY | 8 cut(s) | 368, 419, 719, 1232, 1433, 1583, 2029, 2836 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 185, 749, 1655 |
| Asp718I | GGTACC | 1 cut(s) | 337 |
| AspLEI | GCGC | 5 cut(s) | 26, 649, 1068, 1617, 1851 |
| AspS9I | GGNCC | 3 cut(s) | 1640, 2219, 2481 |
| AsuHPI | GGTGA | 3 cut(s) | 100, 1275, 1379 |
| AvaI | CYCGRG | 1 cut(s) | 2478 |
| AvaII | GGWCC | 1 cut(s) | 1640 |
| AxyI | CCTNAGG | 1 cut(s) | 1706 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2393, 2426 |
| BanI | GGYRCC | 1 cut(s) | 337 |
| BanII | GRGCYC | 1 cut(s) | 2733 |
| BbsI | GAAGAC | 2 cut(s) | 1022, 1314 |
| Bbv12I | GWGCWC | 2 cut(s) | 165, 2733 |
| BbvI | GCAGC | 7 cut(s) | 129, 229, 327, 330, 333, 661, 1027 |
| BccI | CCATC | 9 cut(s) | 350, 874, 909, 1258, 1297, 1860, 2295, 2425, 2849 |
| BciT130I | CCWGG | 2 cut(s) | 1638, 2777 |
| BciVI | GTATCC | 1 cut(s) | 1220 |
| BclI | TGATCA | 1 cut(s) | 264 |
| BcoDI | GTCTC | 5 cut(s) | 542, 1053, 1828, 2096, 2319 |
| BfaI | CTAG | 6 cut(s) | 669, 989, 1625, 1959, 2081, 2535 |
| BfmI | CTRYAG | 2 cut(s) | 243, 2746 |
| BfoI | RGCGCY | 1 cut(s) | 27 |
| BfrI | CTTAAG | 1 cut(s) | 2177 |
| BfuAI | ACCTGC | 1 cut(s) | 261 |
| BfuI | GTATCC | 1 cut(s) | 1220 |
| BglII | AGATCT | 1 cut(s) | 2264 |
| BisI | GCNGC | 9 cut(s) | 22, 143, 243, 284, 316, 319, 322, 650, 1041 |
| BlsI | GCNGC | 9 cut(s) | 23, 144, 244, 285, 317, 320, 323, 651, 1042 |
| BmcAI | AGTACT | 1 cut(s) | 1325 |
| Bme1390I | CCNGG | 2 cut(s) | 1638, 2777 |
| Bme18I | GGWCC | 1 cut(s) | 1640 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2379 |
| BmeT110I | CYCGRG | 1 cut(s) | 2478 |
| BmgT120I | GGNCC | 3 cut(s) | 1640, 2219, 2481 |
| BmiI | GGNNCC | 2 cut(s) | 339, 387 |
| BmrFI | CCNGG | 2 cut(s) | 1638, 2777 |
| BmrI | ACTGGG | 1 cut(s) | 802 |
| BmuI | ACTGGG | 1 cut(s) | 802 |
| BpiI | GAAGAC | 2 cut(s) | 1022, 1314 |
| BpmI | CTGGAG | 2 cut(s) | 331, 2129 |
| BpuEI | CTTGAG | 4 cut(s) | 107, 428, 2453, 2836 |
| BsaAI | YACGTR | 1 cut(s) | 857 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2269 |
| BsaI | GGTCTC | 3 cut(s) | 542, 2096, 2319 |
| BsaJI | CCNNGG | 2 cut(s) | 94, 2775 |
| BsaWI | WCCGGW | 2 cut(s) | 607, 2204 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 614, 960, 2573, 2858 |
| Bse1I | ACTGG | 2 cut(s) | 348, 797 |
| Bse21I | CCTNAGG | 1 cut(s) | 1706 |
| Bse3DI | GCAATG | 1 cut(s) | 800 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2269 |
| BseAI | TCCGGA | 1 cut(s) | 2204 |
| BseBI | CCWGG | 2 cut(s) | 1638, 2777 |
| BseDI | CCNNGG | 2 cut(s) | 94, 2775 |
| BseJI | GATNNNNATC | 1 cut(s) | 2269 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 614, 960, 2573, 2858 |
| BseMI | GCAATG | 1 cut(s) | 800 |
| BseMII | CTCAG | 9 cut(s) | 984, 1520, 1826, 2025, 2091, 2185, 2214, 2397, 2821 |
| BseNI | ACTGG | 2 cut(s) | 348, 797 |
| BseRI | GAGGAG | 3 cut(s) | 191, 1100, 1577 |
| BseXI | GCAGC | 7 cut(s) | 129, 229, 327, 330, 333, 661, 1027 |
| BseYI | CCCAGC | 1 cut(s) | 196 |
| BsgI | GTGCAG | 1 cut(s) | 1938 |
| Bsh1236I | CGCG | 2 cut(s) | 96, 173 |
| BshFI | GGCC | 3 cut(s) | 68, 2221, 2483 |
| BshNI | GGYRCC | 1 cut(s) | 337 |
| BsiHKAI | GWGCWC | 2 cut(s) | 165, 2733 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2478 |
| BsiSI | CCGG | 2 cut(s) | 608, 2205 |
| BslFI | GGGAC | 4 cut(s) | 60, 1133, 2367, 2788 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 614, 960, 2573, 2858 |
| BsmAI | GTCTC | 5 cut(s) | 542, 1053, 1828, 2096, 2319 |
| BsmFI | GGGAC | 4 cut(s) | 60, 1133, 2367, 2788 |
| BsmI | GAATGC | 2 cut(s) | 1360, 2648 |
| BsnI | GGCC | 3 cut(s) | 68, 2221, 2483 |
| Bso31I | GGTCTC | 3 cut(s) | 542, 2096, 2319 |
| BsoBI | CYCGRG | 1 cut(s) | 2478 |
| Bsp1286I | GDGCHC | 2 cut(s) | 165, 2733 |
| Bsp13I | TCCGGA | 1 cut(s) | 2204 |
| Bsp143I | GATC | 6 cut(s) | 105, 264, 840, 1821, 1912, 2264 |
| BspANI | GGCC | 3 cut(s) | 68, 2221, 2483 |
| BspCNI | CTCAG | 9 cut(s) | 983, 1519, 1825, 2026, 2092, 2184, 2215, 2398, 2820 |
| BspEI | TCCGGA | 1 cut(s) | 2204 |
| BspFNI | CGCG | 2 cut(s) | 96, 173 |
| BspHI | TCATGA | 1 cut(s) | 760 |
| BspLI | GGNNCC | 2 cut(s) | 339, 387 |
| BspMAI | CTGCAG | 1 cut(s) | 247 |
| BspMI | ACCTGC | 1 cut(s) | 261 |
| BspPI | GGATC | 1 cut(s) | 1920 |
| BspQI | GCTCTTC | 1 cut(s) | 33 |
| BspT107I | GGYRCC | 1 cut(s) | 337 |
| BspTI | CTTAAG | 1 cut(s) | 2177 |
| BspTNI | GGTCTC | 3 cut(s) | 542, 2096, 2319 |
| BsrDI | GCAATG | 1 cut(s) | 800 |
| BsrI | ACTGG | 2 cut(s) | 348, 797 |
| BssECI | CCNNGG | 2 cut(s) | 94, 2775 |
| BssMI | GATC | 6 cut(s) | 105, 264, 840, 1821, 1912, 2264 |
| BssNAI | GTATAC | 2 cut(s) | 658, 1137 |
| Bst1107I | GTATAC | 2 cut(s) | 658, 1137 |
| Bst2UI | CCWGG | 2 cut(s) | 1638, 2777 |
| Bst4CI | ACNGT | 9 cut(s) | 521, 530, 556, 889, 1730, 2576, 2615, 2747, 2865 |
| Bst6I | CTCTTC | 4 cut(s) | 33, 507, 1100, 2520 |
| BstAFI | CTTAAG | 1 cut(s) | 2177 |
| BstBAI | YACGTR | 1 cut(s) | 857 |
| BstC8I | GCNNGC | 4 cut(s) | 66, 696, 951, 2450 |
| BstDSI | CCRYGG | 1 cut(s) | 94 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 958, 2856 |
| BstFNI | CGCG | 2 cut(s) | 96, 173 |
| BstH2I | RGCGCY | 1 cut(s) | 27 |
| BstHHI | GCGC | 5 cut(s) | 26, 649, 1068, 1617, 1851 |
| BstKTI | GATC | 6 cut(s) | 108, 267, 843, 1824, 1915, 2267 |
| BstMAI | GTCTC | 5 cut(s) | 542, 1053, 1828, 2096, 2319 |
| BstMBI | GATC | 6 cut(s) | 105, 264, 840, 1821, 1912, 2264 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 239, 289, 321, 2048 |
| BstNI | CCWGG | 2 cut(s) | 1638, 2777 |
| BstNSI | RCATGY | 1 cut(s) | 953 |
| BstSCI | CCNGG | 2 cut(s) | 1636, 2775 |
| BstSFI | CTRYAG | 2 cut(s) | 243, 2746 |
| BstUI | CGCG | 2 cut(s) | 96, 173 |
| BstV1I | GCAGC | 7 cut(s) | 129, 229, 327, 330, 333, 661, 1027 |
| BstV2I | GAAGAC | 2 cut(s) | 1022, 1314 |
| BstX2I | RGATCY | 2 cut(s) | 1912, 2264 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 505, 2339 |
| BstYI | RGATCY | 2 cut(s) | 1912, 2264 |
| BstZ17I | GTATAC | 2 cut(s) | 658, 1137 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1706 |
| BsuI | GTATCC | 1 cut(s) | 1220 |
| BsuRI | GGCC | 3 cut(s) | 68, 2221, 2483 |
| BtgI | CCRYGG | 1 cut(s) | 94 |
| BtgZI | GCGATG | 2 cut(s) | 20, 315 |
| BtsIMutI | CAGTG | 2 cut(s) | 552, 790 |
| BveI | ACCTGC | 1 cut(s) | 261 |
| Cac8I | GCNNGC | 4 cut(s) | 66, 696, 951, 2450 |
| CciI | TCATGA | 1 cut(s) | 760 |
| CfoI | GCGC | 5 cut(s) | 26, 649, 1068, 1617, 1851 |
| Cfr13I | GGNCC | 3 cut(s) | 1640, 2219, 2481 |
| Cfr42I | CCGCGG | 1 cut(s) | 97 |
| CseI | GACGC | 1 cut(s) | 179 |
| Csp6I | GTAC | 9 cut(s) | 338, 526, 885, 1324, 1761, 1995, 2194, 2541, 2866 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 343, 378 |
| CviAII | CATG | 6 cut(s) | 699, 761, 950, 1390, 1547, 2091 |
| CviQI | GTAC | 9 cut(s) | 338, 526, 885, 1324, 1761, 1995, 2194, 2541, 2866 |
| DpnI | GATC | 6 cut(s) | 107, 266, 842, 1823, 1914, 2266 |
| DpnII | GATC | 6 cut(s) | 105, 264, 840, 1821, 1912, 2264 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2379 |
| Eam1104I | CTCTTC | 4 cut(s) | 33, 507, 1100, 2520 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2379 |
| EarI | CTCTTC | 4 cut(s) | 33, 507, 1100, 2520 |
| Ecl136II | GAGCTC | 1 cut(s) | 2731 |
| Eco24I | GRGCYC | 1 cut(s) | 2733 |
| Eco31I | GGTCTC | 3 cut(s) | 542, 2096, 2319 |
| Eco47I | GGWCC | 1 cut(s) | 1640 |
| Eco53kI | GAGCTC | 1 cut(s) | 2731 |
| Eco57I | CTGAAG | 3 cut(s) | 294, 1290, 1967 |
| Eco81I | CCTNAGG | 1 cut(s) | 1706 |
| Eco88I | CYCGRG | 1 cut(s) | 2478 |
| EcoICRI | GAGCTC | 1 cut(s) | 2731 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 958, 2856 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2219 |
| EcoRI | GAATTC | 1 cut(s) | 2029 |
| EcoRII | CCWGG | 2 cut(s) | 1636, 2775 |
| EcoT22I | ATGCAT | 2 cut(s) | 802, 2650 |
| EcoT38I | GRGCYC | 1 cut(s) | 2733 |
| FaeI | CATG | 6 cut(s) | 702, 764, 953, 1393, 1550, 2094 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 429, 461, 938, 970, 2499, 2531 |
| FaqI | GGGAC | 4 cut(s) | 60, 1133, 2367, 2788 |
| FatI | CATG | 6 cut(s) | 698, 760, 949, 1389, 1546, 2090 |
| FauI | CCCGC | 2 cut(s) | 923, 2709 |
| FauNDI | CATATG | 1 cut(s) | 1896 |
| FbaI | TGATCA | 1 cut(s) | 264 |
| FblI | GTMKAC | 3 cut(s) | 84, 657, 1136 |
| Fnu4HI | GCNGC | 9 cut(s) | 22, 143, 243, 284, 316, 319, 322, 650, 1041 |
| FriOI | GRGCYC | 1 cut(s) | 2733 |
| Fsp4HI | GCNGC | 9 cut(s) | 22, 143, 243, 284, 316, 319, 322, 650, 1041 |
| FspBI | CTAG | 6 cut(s) | 669, 989, 1625, 1959, 2081, 2535 |
| FspI | TGCGCA | 2 cut(s) | 648, 1616 |
| GlaI | GCGC | 5 cut(s) | 25, 648, 1067, 1616, 1850 |
| GluI | GCNGC | 9 cut(s) | 22, 143, 243, 284, 316, 319, 322, 650, 1041 |
| GsaI | CCCAGC | 1 cut(s) | 200 |
| GsuI | CTGGAG | 2 cut(s) | 331, 2129 |
| HaeII | RGCGCY | 1 cut(s) | 27 |
| HaeIII | GGCC | 3 cut(s) | 68, 2221, 2483 |
| HapII | CCGG | 2 cut(s) | 608, 2205 |
| HgaI | GACGC | 1 cut(s) | 179 |
| HhaI | GCGC | 5 cut(s) | 26, 649, 1068, 1617, 1851 |
| Hin1II | CATG | 6 cut(s) | 702, 764, 953, 1393, 1550, 2094 |
| Hin6I | GCGC | 5 cut(s) | 24, 647, 1066, 1615, 1849 |
| HinP1I | GCGC | 5 cut(s) | 24, 647, 1066, 1615, 1849 |
| HincII | GTYRAC | 1 cut(s) | 85 |
| HindII | GTYRAC | 1 cut(s) | 85 |
| HindIII | AAGCTT | 1 cut(s) | 1590 |
| HpaII | CCGG | 2 cut(s) | 608, 2205 |
| HphI | GGTGA | 3 cut(s) | 100, 1275, 1379 |
| Hpy166II | GTNNAC | 7 cut(s) | 85, 526, 658, 1073, 1137, 1997, 2465 |
| Hpy8I | GTNNAC | 7 cut(s) | 85, 526, 658, 1073, 1137, 1997, 2465 |
| Hpy99I | CGWCG | 3 cut(s) | 83, 86, 221 |
| HpyAV | CCTTC | 9 cut(s) | 290, 964, 1188, 1265, 1520, 1630, 1903, 2330, 2508 |
| HpyCH4III | ACNGT | 9 cut(s) | 521, 530, 556, 889, 1730, 2576, 2615, 2747, 2865 |
| HpyCH4IV | ACGT | 4 cut(s) | 856, 865, 1311, 1781 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 239, 289, 321, 2048 |
| HpySE526I | ACGT | 4 cut(s) | 856, 865, 1311, 1781 |
| Hsp92II | CATG | 6 cut(s) | 702, 764, 953, 1393, 1550, 2094 |
| HspAI | GCGC | 5 cut(s) | 24, 647, 1066, 1615, 1849 |
| Kpn2I | TCCGGA | 1 cut(s) | 2204 |
| KpnI | GGTACC | 1 cut(s) | 341 |
| Ksp22I | TGATCA | 1 cut(s) | 264 |
| KspI | CCGCGG | 1 cut(s) | 97 |
| Kzo9I | GATC | 6 cut(s) | 105, 264, 840, 1821, 1912, 2264 |
| LguI | GCTCTTC | 1 cut(s) | 33 |
| LmnI | GCTCC | 2 cut(s) | 2096, 2342 |
| Lsp1109I | GCAGC | 7 cut(s) | 129, 229, 327, 330, 333, 661, 1027 |
| MaeI | CTAG | 6 cut(s) | 669, 989, 1625, 1959, 2081, 2535 |
| MaeII | ACGT | 4 cut(s) | 856, 865, 1311, 1781 |
| MaeIII | GTNAC | 8 cut(s) | 847, 857, 889, 1079, 1281, 1743, 1928, 2570 |
| MalI | GATC | 6 cut(s) | 107, 266, 842, 1823, 1914, 2266 |
| MboI | GATC | 6 cut(s) | 105, 264, 840, 1821, 1912, 2264 |
| MfeI | CAATTG | 1 cut(s) | 1795 |
| MflI | RGATCY | 2 cut(s) | 1912, 2264 |
| MhlI | GDGCHC | 2 cut(s) | 165, 2733 |
| MlyI | GAGTC | 4 cut(s) | 827, 1454, 1480, 1830 |
| MmeI | TCCRAC | 4 cut(s) | 1007, 1294, 1428, 2597 |
| Mph1103I | ATGCAT | 2 cut(s) | 802, 2650 |
| MroI | TCCGGA | 1 cut(s) | 2204 |
| MroXI | GAANNNNTTC | 3 cut(s) | 185, 749, 1655 |
| MslI | CAYNNNNRTG | 6 cut(s) | 765, 795, 805, 1365, 1857, 1967 |
| MspA1I | CMGCKG | 5 cut(s) | 96, 114, 200, 974, 2704 |
| MspCI | CTTAAG | 1 cut(s) | 2177 |
| MspI | CCGG | 2 cut(s) | 608, 2205 |
| MspR9I | CCNGG | 2 cut(s) | 1638, 2777 |
| MunI | CAATTG | 1 cut(s) | 1795 |
| Mva1269I | GAATGC | 2 cut(s) | 1360, 2648 |
| MvaI | CCWGG | 2 cut(s) | 1638, 2777 |
| MvnI | CGCG | 2 cut(s) | 96, 173 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 239, 289, 321, 2048 |
| NdeI | CATATG | 1 cut(s) | 1896 |
| NdeII | GATC | 6 cut(s) | 105, 264, 840, 1821, 1912, 2264 |
| NlaIII | CATG | 6 cut(s) | 702, 764, 953, 1393, 1550, 2094 |
| NlaIV | GGNNCC | 2 cut(s) | 339, 387 |
| NmuCI | GTSAC | 5 cut(s) | 847, 889, 1281, 1928, 2570 |
| NsbI | TGCGCA | 2 cut(s) | 648, 1616 |
| NsiI | ATGCAT | 2 cut(s) | 802, 2650 |
| NspI | RCATGY | 1 cut(s) | 953 |
| PaeI | GCATGC | 1 cut(s) | 953 |
| PagI | TCATGA | 1 cut(s) | 760 |
| PciSI | GCTCTTC | 1 cut(s) | 33 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 660, 862 |
| PctI | GAATGC | 2 cut(s) | 1360, 2648 |
| PdmI | GAANNNNTTC | 3 cut(s) | 185, 749, 1655 |
| PfeI | GAWTC | 9 cut(s) | 305, 469, 604, 2111, 2494, 2684, 2752, 2759, 2780 |
| PkrI | GCNGC | 9 cut(s) | 23, 144, 244, 285, 317, 320, 323, 651, 1042 |
| PleI | GAGTC | 4 cut(s) | 826, 1454, 1480, 1830 |
| PpsI | GAGTC | 4 cut(s) | 826, 1454, 1480, 1830 |
| Ppu21I | YACGTR | 1 cut(s) | 857 |
| Psp124BI | GAGCTC | 1 cut(s) | 2733 |
| Psp1406I | AACGTT | 1 cut(s) | 1781 |
| Psp6I | CCWGG | 2 cut(s) | 1636, 2775 |
| PspFI | CCCAGC | 1 cut(s) | 196 |
| PspGI | CCWGG | 2 cut(s) | 1636, 2775 |
| PspN4I | GGNNCC | 2 cut(s) | 339, 387 |
| PspPI | GGNCC | 3 cut(s) | 1640, 2219, 2481 |
| PstI | CTGCAG | 1 cut(s) | 247 |
| PsuI | RGATCY | 2 cut(s) | 1912, 2264 |
| PvuII | CAGCTG | 2 cut(s) | 200, 974 |
| RsaI | GTAC | 9 cut(s) | 339, 527, 886, 1325, 1762, 1996, 2195, 2542, 2867 |
| RsaNI | GTAC | 9 cut(s) | 338, 526, 885, 1324, 1761, 1995, 2194, 2541, 2866 |
| RseI | CAYNNNNRTG | 6 cut(s) | 765, 795, 805, 1365, 1857, 1967 |
| SacI | GAGCTC | 1 cut(s) | 2733 |
| SacII | CCGCGG | 1 cut(s) | 97 |
| SalI | GTCGAC | 1 cut(s) | 83 |
| SapI | GCTCTTC | 1 cut(s) | 33 |
| SatI | GCNGC | 9 cut(s) | 22, 143, 243, 284, 316, 319, 322, 650, 1041 |
| Sau3AI | GATC | 6 cut(s) | 105, 264, 840, 1821, 1912, 2264 |
| Sau96I | GGNCC | 3 cut(s) | 1640, 2219, 2481 |
| ScaI | AGTACT | 1 cut(s) | 1325 |
| SchI | GAGTC | 4 cut(s) | 827, 1454, 1480, 1830 |
| ScrFI | CCNGG | 2 cut(s) | 1638, 2777 |
| SduI | GDGCHC | 2 cut(s) | 165, 2733 |
| SfcI | CTRYAG | 2 cut(s) | 243, 2746 |
| Sfr303I | CCGCGG | 1 cut(s) | 97 |
| SgrBI | CCGCGG | 1 cut(s) | 97 |
| SinI | GGWCC | 1 cut(s) | 1640 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 765, 795, 805, 1365, 1857, 1967 |
| SmlI | CTYRAG | 5 cut(s) | 122, 407, 2177, 2432, 2815 |
| SmoI | CTYRAG | 5 cut(s) | 122, 407, 2177, 2432, 2815 |
| SphI | GCATGC | 1 cut(s) | 953 |
| SspI | AATATT | 3 cut(s) | 1101, 1654, 2823 |
| SspMI | CTAG | 6 cut(s) | 669, 989, 1625, 1959, 2081, 2535 |
| SstI | GAGCTC | 1 cut(s) | 2733 |
| StyD4I | CCNGG | 2 cut(s) | 1636, 2775 |
| TaaI | ACNGT | 9 cut(s) | 521, 530, 556, 889, 1730, 2576, 2615, 2747, 2865 |
| TaiI | ACGT | 4 cut(s) | 859, 868, 1314, 1784 |
| TaqI | TCGA | 7 cut(s) | 84, 165, 216, 294, 1211, 1343, 1524 |
| TaqII | GACCGA | 1 cut(s) | 2120 |
| TatI | WGTACW | 2 cut(s) | 1323, 1760 |
| TauI | GCSGC | 2 cut(s) | 24, 286 |
| TfiI | GAWTC | 9 cut(s) | 305, 469, 604, 2111, 2494, 2684, 2752, 2759, 2780 |
| TscAI | CASTG | 2 cut(s) | 559, 797 |
| TseFI | GTSAC | 5 cut(s) | 847, 889, 1281, 1928, 2570 |
| TseI | GCWGC | 7 cut(s) | 142, 242, 315, 318, 321, 649, 1040 |
| Tsp45I | GTSAC | 5 cut(s) | 847, 889, 1281, 1928, 2570 |
| TspDTI | ATGAA | 8 cut(s) | 79, 318, 381, 749, 1110, 1535, 1818, 2006 |
| TspGWI | ACGGA | 3 cut(s) | 37, 846, 2091 |
| TspRI | CASTG | 2 cut(s) | 559, 797 |
| Vha464I | CTTAAG | 1 cut(s) | 2177 |
| VpaK11BI | GGWCC | 1 cut(s) | 1640 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 958, 2856 |
| XapI | RAATTY | 8 cut(s) | 368, 419, 719, 1232, 1433, 1583, 2029, 2836 |
| XbaI | TCTAGA | 1 cut(s) | 988 |
| XceI | RCATGY | 1 cut(s) | 953 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 505 |
| XmiI | GTMKAC | 3 cut(s) | 84, 657, 1136 |
| XmnI | GAANNNNTTC | 3 cut(s) | 185, 749, 1655 |
| XspI | CTAG | 6 cut(s) | 669, 989, 1625, 1959, 2081, 2535 |
| ZrmI | AGTACT | 1 cut(s) | 1325 |
| Zsp2I | ATGCAT | 2 cut(s) | 802, 2650 |