RchiOBHm_Chr1g0327301

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
16033002 .. 16044372
11371 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55683

Sequence Viewer

Length: 3903 bp
ATGGCTCTGTTCCGAGGTCACAAGGCCTCCCTTTCCAAATATACTACCTCTCCTCATCCATATAGCTATCATGTGTTCTTGAGTTTTAGAGGTGAGGACACCCGAAAGAACTTCACTGATCACCTCTACACAGCCCTTGTCAACGCCGGATTTCATACTTTCCGGGATGACCCTGAACTCGAAAGAGGTGAAAATATCAAGGAAAAGCTTGGGAAAGCCATTCAACAGTCACAAAGTTCTGTCATTGTGTTTTCGAAAGACTACACCTCTTCCAGATGGTGTCTGGACGAGCTTGTGATGATCCTTGAACGCAAGAGGACCTCCGATCATGTTGTTTTACCAGTCTTCTACGACGTTGATCCATCTCAAGTGAGGAAGCAGGCAGAAGCTCTTGCAAAGGTTCCTAAATACCAAGAAAATCAATCGTCGGAGAGGTTGAATGGATGGCGGGCAGCACTTAGAGAAGTCGCAGATCTAGCTGGAATGGTTTTAGAAAATGAAGCTGACGGGCACGAATCAAAGTTCATCCAAAATATCATTAGAGTGATCCAAGACAAACTAGGTCGTCGTGTGCCCCTGACCGAAGTCCAGGAGGTGTTACAGAAGAAGTTGTTGTTTATTAACCCTGTTCTCGATGACGCCGAGGGGAAGCAACTGAACAACCCAACAGTGATGGCATGGCTCAATGAGCTTAAAGACGCAGTCTATGATACTGAGGACCTATTGCAGGAGATCAAGACAGAAGTATTAAGGCGAAAGATGGAACCTGAATCTGGAACTAGCACGAGTAAGGTACAAGATCTGATCTCTACTCCTCCATCTCATGTTTTTGACTTGGCATTAATATGCCCCAGGGTAGAGGAAGTTCTTAATAGACTAGACTCCATTATGGAGCAGAGAAGAGATGTCTTGGGTATAGAAGCAAGTGCTGGATACAGTGCATCACAAACAATACCGTCAACTTCTTTGGTCGAAGAGTTTGGTGTGTATGGCAGGGATGATGAGAAGGAGACACTAATGAAATTGTTGCTATCAGACGATCAGAGTGGCAATAAGATAAGTGTGATTCCTGTTGTGGGGATGGGTGGGATTGGAAAGACCACCCTTGCCCAGTTTTTATACAATGATGACAGAGTCAAACGGCATTTTGACCTCCAAGCATGGGCATGTGTTTCTGAAAAATTTGATGTCCTTCGGATCTCACAACAAATTTATGAGTCCGTTACTTCAGATGCTTGCTTCATTATGAACTTAGATCTGCTTCAGTCAAAATTGAAGGCTGCTTTGATGGGGAAAAGGATTTTCCTTGTTCTTGATGACTTGTGGAATAAAAATTACACTGAATGGGATGTTTTAAGGCGTCCATTTCAATTTGGAGCACATGGAAGTAAGATTATTGTCACAACACGCAATCAAGATGTTGCATGCATGGTGTGTACTCTTGAAGCTCACCGTCTCAGGCCGATGTCTGAGGAAGATGGCTGGTTGCTATTTGAAAAACATGCCTTCAAAAATGCAGGTGTTGGTGCATACTTACATCTTGAAGAAATCGGTAGACAAATTGTTCGAAAGTGCAATGGTCTTCCTTTGGCTATTAAGTCTCTTGGGGGTCTCTTATGTTCTAAATTAACCGTGGGGGAATGGGAGAGTATATTGAACAGTGAGATGTGGGAGTTGCCACAGGAGGAGAGTGACATTCTGCCATCTCTTTGGTTGAGCTATAAGCATCTGCCTGCACATCTCAAGTGTTGTTTTGCGTATTGTTCGATATTTCCCAAGAACTATGCGTTCGAAACATCAAAATTGGTTTTGTTGTGGAAGGCTGTAGATCTATTGCAACCTAACAAAAACAAAATGGCAGAAGAAACCGGAAAAGACTACATCAATGATCTATACTCAAGGTCTTTTTTTCAATTTTCATCAAGAGAGGGTCATCAAACTTTCACCATGCATGACCTTATAAATGATTTAGCAAACTTTGTATCCACAGAATTTTTTTTTAGGTGGGAGGGCAGTGATTCAGCCAACATTTTGAGCAAGACTCGTCATTTTTCATATATGCTGGAATATTATGATGAGGCTGATGGCTTAGAGATGTTTGAGGCTTTACAGCAAGCTAAAAGTTTGCGCACCTTTCTACCATTACAATGTTCAAGTTATGAGAGGTCGAAACTGTTGGGGAAAGGACTTGAGTTATTGTCAAAATTACAATATTTAAGAGCGCTCACGTTATCAGGGCACGATACTGAAGAATTGCCTGATTCAATTAACAACTTGAAACAACTTAGGTACTTGGACTTGTCTTCGACACCAATCAAAAAGTTACCTGATAGAATTTGTACTCTGTATAACTTGCAAGTGTTGTTGTTGTCACATTGTTCTGCTCTTACTGAACTGCCAGCCAACTTGGGAAGATTGATCAACTTGAGCCATCTGGATACTTTTGCTACAAAAAGGTTAAAGAAGATGCCCCCTCTTATGGGCGATTTGAAAGACCTCCAGATTTTAACCGTATTTGTGGTAGACAAGCACACTGCAAGGGATAATTTGCTAGAGTTGAAGAAGCTTCAAAATTTGCGCAGAGGACTTTGTATTTCAGGGCTTGGTGATGTCGTGCATGGCAGCGCTTTGGAGGCCCACATTCTGAGGGACAAGAAGTTTCTTAGTGTTCTAGTTTTGAATTGGGGAGGAAGGCATGTTAGTGAACTAGGCAATAATACTGTAGACGATATAGAAGTGCTTGAGAAGCTCCAACCTCACCCAAACCTAGAAAGGCTTACAGTTAGAGATTATGGAGGCAGATTCTTTCCAGGTTGGTCAGGATATTATACTTCCTTGCTACCAAGAAAAGCTCTAGTTTATCTTGAGCTTGTTGATTGTGTGAATTGTGTCTCCTTGCCACCATTGGGACAGCTACCTTGCCTCAGAGAGCTTGATATTTCTGGGTTACATGGAGTGCTGTCCATTGGTTCCGAGTTTTATTATGGTGACAAAACTAGTGCAAACAAACCATTTAGCTCTCTACAATCATTGAGATTCTATGATATGAGCGGGTGGCAAGAATGGTGTCATGTTGGAGGTGAGGAGGATGAAGGTGGGGTTTTTCCTAGTCTTATTTACCTTGATGTATCAGACTGTCCTAATCTTTCCGGGAGATTAGCGTTAGACAGCTTCCCGATGCTAAAAGAGGTCGACTTGATCAGGACTAACCTATCCCTAGTCACCAGGTCACGGGACTCTAAATTATCCCTGAACCAGTTGCGATTACAGTCGTGCTCAAATATTGTAGCTTTTCCAGCTGGAGGGTTACACGCACCCAACTTGACGGAAATAGAAATCAGACGATGTGAGAAATTGGGTTCGTTGCCGGAACAAATGGAGACCCTTCTCCCATCTCTTGTGTCTTTGTGTTTATGGGATTGCCCAGAACTGGAATGTTTTCCGGAAGCGGGATTCCCGTCAAAGTTAAAATCACTTATCATCATGGAATGTAAAAAACTGAATGCAAAGAGTATGCAGAATATGAACAAAGTTCTCCGAAGACTGACCTATCTTGAAGACCTGAGACTTGACTTCGACTGCGACGAAGAATGTGAAAAGGTAGATTGGTTTTCGGAGGGCCTGTTGCCCAGCACTCTCGATTACCTCCTGATCCACCGTCTCAAGTGTGAGGCCATCGACGGCGCCAAATGGTTTGGCCATCTCAACTCTCTTCGAAGCTTGGAGATTAGCGACTGCTCTTCGCTCCGGTGCTTGCCAGATTGTGGGTTACCCTCGTCTCTTACTCAACTATTTATCCATGGATGTCCTTTGCTTGAAAAACGGTGCCAAAGAGAGACAGGTGAAGATTGGCCCAAGATTGTTCACATCTCTATGATATTGATTGATTGGCATACGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

1300

Amino Acids

147.86

Weight (kDa)

5.79

Isoelectric Point (pI)

53.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 23 - 198 1.8e-43 TIR domain
TIR_2 PF13676 25 - 122 1.4e-16 TIR domain
Rx_N PF18052 175 - 258 1.1e-15 Rx N-terminal domain
NB-ARC PF00931 333 - 505 8.2e-35 NB-ARC domain
WHD_DRP PF23559 590 - 658 3e-21 Disease resistance protein Winged helix domain
LRR_14 PF23598 731 - 1064 1.3e-27 Leucine-rich repeat region
LRR_R13L1-DRL21 PF25019 852 - 982 1e-28 R13L1/DRL21 LRRs
LRR_R13L1-DRL21 PF25019 1158 - 1269 1.4e-06 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000035)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G14470 AT3G14470
fragaria_vesca FvH4_1g01220 FvH4_1g01230 FvH4_3g24551 FvH4_3g24552 FvH4_4g29310 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_6g39860 FvH4_6g39861 FvH4_7g11380
malus_domestica MD00G1072900.v1.1 MD00G1073100.v1.1 MD00G1120600.v1.1 MD00G1120900.v1.1 MD00G1121000.v1.1 MD00G1121200.v1.1 MD00G1152300.v1.1 MD00G1203600.v1.1 MD00G1203700.v1.1 MD02G1250900.v1.1 MD02G1251900.v1.1 MD02G1252800.v1.1 MD02G1277100.v1.1 MD02G1277200.v1.1 MD02G1277400.v1.1 MD02G1286100.v1.1 MD02G1286200.v1.1 MD02G1286900.v1.1 MD03G1006200.v1.1 MD03G1015300.v1.1 MD03G1015500.v1.1 MD03G1015900.v1.1 MD03G1016000.v1.1 MD03G1024900.v1.1 MD03G1025000.v1.1 MD03G1025500.v1.1 MD03G1026000.v1.1 MD03G1026500.v1.1 MD03G1031800.v1.1 MD03G1072200.v1.1 MD07G1028000.v1.1 MD07G1028300.v1.1 MD07G1029400.v1.1 MD07G1029500.v1.1 MD07G1040300.v1.1 MD07G1044500.v1.1 MD07G1045100.v1.1 MD07G1045500.v1.1 MD07G1050700.v1.1 MD07G1050900.v1.1 MD07G1055800.v1.1 MD07G1056200.v1.1 MD07G1056600.v1.1 MD07G1057100.v1.1 MD07G1057200.v1.1 MD08G1056500.v1.1 MD08G1056600.v1.1 MD08G1056700.v1.1 MD08G1056800.v1.1 MD08G1128800.v1.1 MD08G1129500.v1.1 MD08G1130000.v1.1 MD11G1066700.v1.1 MD11G1066800.v1.1 MD11G1066900.v1.1 MD11G1067000.v1.1 MD11G1067500.v1.1 MD11G1069800.v1.1 MD11G1070400.v1.1 MD11G1071100.v1.1 MD11G1071200.v1.1 MD11G1077200.v1.1 MD11G1077700.v1.1 MD11G1077900.v1.1 MD11G1078100.v1.1 MD11G1078300.v1.1 MD11G1078500.v1.1 MD11G1135200.v1.1 MD11G1135400.v1.1 MD11G1152900.v1.1 MD11G1153000.v1.1 MD17G1056800.v1.1
prunus_persica Prupe.2G037800_v2.0.a1 Prupe.2G037800_v2.0.a1 Prupe.2G037800_v2.0.a1 Prupe.2G037800_v2.0.a1 Prupe.2G040500_v2.0.a1 Prupe.2G040700_v2.0.a1 Prupe.2G043000_v2.0.a1 Prupe.2G043100_v2.0.a1 Prupe.2G043200_v2.0.a1 Prupe.2G046000_v2.0.a1 Prupe.2G046300_v2.0.a1 Prupe.2G046400_v2.0.a1 Prupe.2G046400_v2.0.a1 Prupe.2G046700_v2.0.a1 Prupe.2G046900_v2.0.a1 Prupe.2G051100_v2.0.a1 Prupe.2G052200_v2.0.a1 Prupe.2G053600_v2.0.a1 Prupe.2G053600_v2.0.a1 Prupe.2G053600_v2.0.a1 Prupe.2G053600_v2.0.a1 Prupe.2G053700_v2.0.a1 Prupe.2G053800_v2.0.a1 Prupe.2G053900_v2.0.a1 Prupe.2G054000_v2.0.a1 Prupe.2G054100_v2.0.a1 Prupe.2G054200_v2.0.a1 Prupe.2G054300_v2.0.a1 Prupe.2G054300_v2.0.a1 Prupe.2G054300_v2.0.a1 Prupe.2G054300_v2.0.a1 Prupe.2G054500_v2.0.a1 Prupe.2G054700_v2.0.a1 Prupe.4G286000_v2.0.a1 Prupe.4G286000_v2.0.a1 Prupe.4G286000_v2.0.a1 Prupe.6G129800_v2.0.a1 Prupe.6G130000_v2.0.a1 Prupe.6G130000_v2.0.a1
pyrus_communis pycom02g23740 pycom02g23750 pycom02g24320 pycom03g00620 pycom03g01280 pycom03g01320 pycom03g01350 pycom03g01360 pycom03g01370 pycom03g01380 pycom03g01390 pycom03g02160 pycom03g02170 pycom03g05850 pycom03g09810 pycom07g02120 pycom07g02790 pycom07g02800 pycom07g03210 pycom07g03660 pycom07g03670 pycom07g04350 pycom08g10780 pycom08g10840 pycom08g10910 pycom11g05650 pycom11g05670 pycom11g05800 pycom11g05880 pycom11g05890 pycom11g05940 pycom11g06490 pycom11g06500 pycom11g06520 pycom11g06560 pycom11g06570 pycom11g11230 pycom11g13650 pycom17g05700
rosa_chinensis RchiOBHm_Chr1g0318341 RchiOBHm_Chr1g0318901 RchiOBHm_Chr1g0318931 RchiOBHm_Chr1g0327301 RchiOBHm_Chr1g0328491 RchiOBHm_Chr1g0336761 RchiOBHm_Chr1g0336831 RchiOBHm_Chr1g0340721 RchiOBHm_Chr1g0342461 RchiOBHm_Chr1g0342471 RchiOBHm_Chr1g0342481 RchiOBHm_Chr1g0346131 RchiOBHm_Chr1g0346191 RchiOBHm_Chr1g0346211 RchiOBHm_Chr1g0346241 RchiOBHm_Chr1g0346261 RchiOBHm_Chr1g0346281 RchiOBHm_Chr1g0346461 RchiOBHm_Chr1g0346471 RchiOBHm_Chr1g0346481 RchiOBHm_Chr1g0346501 RchiOBHm_Chr1g0347691 RchiOBHm_Chr1g0347701 RchiOBHm_Chr1g0347751 RchiOBHm_Chr1g0347791 RchiOBHm_Chr1g0347971 RchiOBHm_Chr1g0349661 RchiOBHm_Chr1g0349741 RchiOBHm_Chr1g0357561 RchiOBHm_Chr3g0492601 RchiOBHm_Chr5g0039181 RchiOBHm_Chr5g0039231 RchiOBHm_Chr5g0039241 RchiOBHm_Chr5g0039251 RchiOBHm_Chr5g0039531 RchiOBHm_Chr5g0044001 RchiOBHm_Chr5g0044571 RchiOBHm_Chr5g0044611 RchiOBHm_Chr5g0044631 RchiOBHm_Chr5g0044641 RchiOBHm_Chr5g0044651 RchiOBHm_Chr5g0044661 RchiOBHm_Chr5g0044681 RchiOBHm_Chr5g0045221 RchiOBHm_Chr5g0045901 RchiOBHm_Chr5g0045991 RchiOBHm_Chr5g0046001 RchiOBHm_Chr5g0046011
rosa_laevigata RLG00000028715 RLG00000028718 RLG00000029034 RLG00000029926 RLG00000030516 RLG00000034285 RLG00000034288
rosa_multiflora Rmu_co7987576.1_g000001 Rmu_co8028038.1_g000001 Rmu_co8104858.1_g000001 Rmu_co8185828.1_g000001 Rmu_co8227651.1_g000001 Rmu_co8235061.1_g000001 Rmu_co8246845.1_g000001 Rmu_co8254315.1_g000001 Rmu_co8284899.1_g000001 Rmu_co8401461.1_g000001 Rmu_co8475625.1_g000001 Rmu_co8502681.1_g000001 Rmu_sc0000250.1_g000005 Rmu_sc0000492.1_g000001 Rmu_sc0000533.1_g000004 Rmu_sc0000795.1_g000114 Rmu_sc0000831.1_g000039 Rmu_sc0000907.1_g000014 Rmu_sc0000907.1_g000034 Rmu_sc0001035.1_g000007 Rmu_sc0001035.1_g000011 Rmu_sc0001035.1_g000012 Rmu_sc0001099.1_g000003 Rmu_sc0001157.1_g000008 Rmu_sc0001212.1_g000016 Rmu_sc0001212.1_g000017 Rmu_sc0001304.1_g000027 Rmu_sc0001304.1_g000033 Rmu_sc0001773.1_g000019 Rmu_sc0001836.1_g000069 Rmu_sc0001856.1_g000004 Rmu_sc0002286.1_g000003 Rmu_sc0002286.1_g000004 Rmu_sc0002286.1_g000005 Rmu_sc0002286.1_g000007 Rmu_sc0002286.1_g000015 Rmu_sc0002495.1_g000025 Rmu_sc0002545.1_g000008 Rmu_sc0002545.1_g000009 Rmu_sc0002662.1_g000009 Rmu_sc0003363.1_g000019 Rmu_sc0003363.1_g000022 Rmu_sc0003600.1_g000057 Rmu_sc0003809.1_g000036 Rmu_sc0003809.1_g000037 Rmu_sc0005008.1_g000026 Rmu_sc0005008.1_g000028 Rmu_sc0005028.1_g000001 Rmu_sc0005144.1_g000022 Rmu_sc0005167.1_g000004 Rmu_sc0005626.1_g000005 Rmu_sc0005626.1_g000018 Rmu_sc0006228.1_g000011 Rmu_sc0006609.1_g000007 Rmu_sc0006609.1_g000009 Rmu_sc0006609.1_g000015 Rmu_sc0006609.1_g000016 Rmu_sc0006609.1_g000017 Rmu_sc0006609.1_g000018 Rmu_sc0007060.1_g000003 Rmu_sc0007318.1_g000011 Rmu_sc0007992.1_g000002 Rmu_sc0009172.1_g000001 Rmu_sc0010151.1_g000010 Rmu_sc0010151.1_g000011 Rmu_sc0011778.1_g000001 Rmu_sc0011778.1_g000005 Rmu_sc0011778.1_g000009 Rmu_sc0012293.1_g000001 Rmu_sc0012293.1_g000002 Rmu_sc0016606.1_g000001 Rmu_sc0016836.1_g000001 Rmu_sc0021084.1_g000008 Rmu_sc0021449.1_g000001 Rmu_sc0026523.1_g000001 Rmu_sc0027133.1_g000003 Rmu_sc0038674.1_g000001 Rmu_ssc0000255.1_g000053 Rmu_ssc0000255.1_g000063 Rmu_ssc0000255.1_g000064 Rmu_ssc0000263.1_g000004 Rmu_ssc0000400.1_g000027
rosa_roxburghii Rroxscaffold_1G00035290 Rroxscaffold_1G00036350 Rroxscaffold_1G00036360 Rroxscaffold_1G00036400 Rroxscaffold_1G00036460 Rroxscaffold_1G00037000 Rroxscaffold_1G00040440 Rroxscaffold_1G00041890 Rroxscaffold_1G00041920 Rroxscaffold_4G00307460 Rroxscaffold_4G00307500 Rroxscaffold_4G00308500 Rroxscaffold_4G00308510 Rroxscaffold_4G00308770 Rroxscaffold_4G00313020 Rroxscaffold_4G00321580 Rroxscaffold_4G00323030 Rroxscaffold_4G00326850 Rroxscaffold_4G00328770 Rroxscaffold_4G00328780 Rroxscaffold_4G00329310 Rroxscaffold_5G00352110
rosa_rugosa Rorug01G0020700 Rorug01G0023000 Rorug01G0023100 Rorug01G0023200 Rorug01G0023300 Rorug01G0023400 Rorug01G0024500 Rorug01G0025100 Rorug01G0025200 Rorug01G0025400 Rorug01G0025400 Rorug01G0064700 Rorug01G0065300 Rorug01G0127600 Rorug01G0128000 Rorug01G0148000.1 Rorug01G0150500.1 Rorug01G0161600.1 Rorug01G0161800.1 Rorug01G0163600.1 Rorug01G0178300 Rorug01G0178500 Rorug01G0178700 Rorug01G0179900 Rorug01G0180200 Rorug01G0180300 Rorug01G0180400 Rorug01G0189000 Rorug01G0189100 Rorug01G0190500 Rorug01G0204800 Rorug05G0177200 Rorug05G0210300 Rorug05G0210300 Rorug05G0210300 Rorug05G0215400 Rorug05G0215400 Rorug05G0215400 Rorug05G0215400 Rorug05G0215500 Rorug05G0215600 Rorug05G0215800 Rorug05G0215900 Rorug05G0215900 Rorug05G0216000 Rorug05G0216200 Rorug05G0216300 Rorug05G0221900 Rorug07G0276700
rosa_samantha Rh1BG028400 Rh1BG033500 Rh1BG065100 Rh1BG073100 Rh1BG073200 Rh1BG117000 Rh1BG164000 Rh1BG164200 Rh1BG172100 Rh1BG173900 Rh1BG174100 Rh1BG188400 Rh1CG036000 Rh1CG036500 Rh1CG089900 Rh1CG140200 Rh1CG164700 Rh1CG182600 Rh1CG182900 Rh1CG183400 Rh1CG191300 Rh1CG192000 Rh1CG207700 Rh1DG033800 Rh1DG033900 Rh1DG096000 Rh5AG299900 Rh5AG304500 Rh5AG307100 Rh5AG307500 Rh5CG301600 Rh5CG329800 Rh5CG333800 Rh5DG311400 Rh5DG316300 Rh5DG316400 Rh5DG316700 Rh5DG316800 Rh5DG316900 Rh5DG326100 Rh7AG431900 Rh7CG451000
rosa_wichuraiana Rw0G007840 Rw0G009850 Rw0G013000 Rw0G015090 Rw0G021190 Rw1G002610 Rw1G004320 Rw1G006520 Rw1G007250 Rw1G012020 Rw1G013830 Rw1G014770 Rw1G016300 Rw1G016600 Rw1G016650 Rw1G017290 Rw1G017420 Rw1G017630 Rw1G017650 Rw1G017660 Rw1G017690 Rw1G017700 Rw1G018960 Rw5G024660 Rw5G024700 Rw5G024720 Rw5G024740 Rw5G024980 Rw5G027710 Rw5G027720 Rw5G027730 Rw5G027740 Rw5G027750 Rw5G028130 Rw5G028740 Rw5G028750 Rw5G028790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1961
AarI CACCTGC 1 cut(s) 1508
Acc16I TGCGCA 2 cut(s) 2129, 2579
Acc36I ACCTGC 1 cut(s) 1508
AccB1I GGYRCC 2 cut(s) 3683, 3825
AccB7I CCANNNNNTGG 1 cut(s) 3764
AccBSI CCGCTC 1 cut(s) 3051
AccI GTMKAC 4 cut(s) 1555, 2523, 2724, 3192
AccIII TCCGGA 1 cut(s) 3442
AciI CCGC 3 cut(s) 448, 3051, 3449
AclWI GGATC 5 cut(s) 295, 353, 541, 1205, 3646
AcoI YGGCCR 1 cut(s) 3697
AcsI RAATTY 5 cut(s) 1181, 1209, 1991, 2334, 2572
AcuI CTGAAG 3 cut(s) 1212, 1247, 2268
AcyI GRCGYC 3 cut(s) 639, 1360, 3684
AfaI GTAC 4 cut(s) 795, 1438, 2291, 2341
AfeI AGCGCT 2 cut(s) 2223, 2626
AhlI ACTAGT 1 cut(s) 2996
AjnI CCWGG 4 cut(s) 588, 851, 2809, 3224
Alw21I GWGCWC 2 cut(s) 1381, 3278
AlwI GGATC 5 cut(s) 295, 353, 541, 1205, 3646
Aor13HI TCCGGA 1 cut(s) 3442
Aor51HI AGCGCT 2 cut(s) 2223, 2626
AoxI GGCC 7 cut(s) 24, 1460, 2634, 3619, 3672, 3697, 3851
ApeKI GCWGC 3 cut(s) 452, 1280, 2622
ApoI RAATTY 5 cut(s) 1181, 1209, 1991, 2334, 2572
ArsI GACNNNNNNTTYG 2 cut(s) 1548, 1580
AseI ATTAAT 1 cut(s) 842
Asp700I GAANNNNTTC 1 cut(s) 3438
AspLEI GCGC 5 cut(s) 2130, 2224, 2580, 2627, 3686
AspS9I GGNCC 5 cut(s) 318, 718, 2635, 3619, 3852
AsuC2I CCSGG 2 cut(s) 164, 3151
AsuII TTCGAA 4 cut(s) 254, 1567, 1791, 3715
AvaII GGWCC 2 cut(s) 318, 718
BaeGI GKGCMC 3 cut(s) 513, 576, 2241
BalI TGGCCA 1 cut(s) 3699
BanI GGYRCC 2 cut(s) 3683, 3825
BauI CACGAG 1 cut(s) 784
BbsI GAAGAC 5 cut(s) 337, 1574, 2295, 3547, 3564
Bbv12I GWGCWC 2 cut(s) 1381, 3278
BbvI GCAGC 3 cut(s) 464, 1267, 2634
BceAI ACGGC 2 cut(s) 1157, 3697
BciT130I CCWGG 4 cut(s) 590, 853, 2811, 3226
BciVI GTATCC 3 cut(s) 926, 1993, 2431
BclI TGATCA 3 cut(s) 118, 2418, 3198
BcnI CCSGG 2 cut(s) 164, 3151
BcuI ACTAGT 1 cut(s) 2996
BfmI CTRYAG 2 cut(s) 1824, 2721
BfoI RGCGCY 3 cut(s) 2225, 2628, 3687
BfuAI ACCTGC 1 cut(s) 1508
BfuI GTATCC 3 cut(s) 926, 1993, 2431
BglII AGATCT 4 cut(s) 472, 799, 1255, 1828
BisI GCNGC 3 cut(s) 453, 1281, 2623
BlsI GCNGC 3 cut(s) 454, 1282, 2624
Bme1390I CCNGG 6 cut(s) 164, 590, 853, 2811, 3151, 3226
Bme18I GGWCC 2 cut(s) 318, 718
BmgT120I GGNCC 5 cut(s) 318, 718, 2635, 3619, 3852
BmiI GGNNCC 5 cut(s) 402, 765, 2971, 3685, 3827
BmrFI CCNGG 6 cut(s) 164, 590, 853, 2811, 3151, 3226
BmrI ACTGGG 1 cut(s) 1105
BmsI GCATC 5 cut(s) 950, 1222, 1735, 2457, 3168
BmuI ACTGGG 1 cut(s) 1105
BoxI GACNNNNGTC 1 cut(s) 584
BpiI GAAGAC 5 cut(s) 337, 1574, 2295, 3547, 3564
BplI GAGNNNNNCTC 2 cut(s) 2026, 2058
BpmI CTGGAG 2 cut(s) 2483, 3321
Bpu14I TTCGAA 4 cut(s) 254, 1567, 1791, 3715
BpuEI CTTGAG 9 cut(s) 100, 351, 1727, 1882, 2210, 2446, 2762, 2885, 3647
BpuMI CCSGG 2 cut(s) 164, 3151
BsaHI GRCGYC 3 cut(s) 639, 1360, 3684
BsaI GGTCTC 2 cut(s) 1616, 3374
BsaJI CCNNGG 6 cut(s) 13, 642, 851, 852, 1632, 3799
BsaWI WCCGGW 3 cut(s) 1868, 3442, 3747
BsaXI ACNNNNNCTCC 6 cut(s) 11, 34, 41, 64, 3608, 3638
Bse1I ACTGG 4 cut(s) 341, 1111, 3256, 3435
Bse3DI GCAATG 1 cut(s) 1582
BseAI TCCGGA 1 cut(s) 3442
BseBI CCWGG 4 cut(s) 590, 853, 2811, 3226
BseDI CCNNGG 6 cut(s) 13, 642, 851, 852, 1632, 3799
BseGI GGATG 9 cut(s) 55, 172, 449, 525, 1003, 1086, 1354, 3094, 3809
BseMI GCAATG 1 cut(s) 1582
BseMII CTCAG 6 cut(s) 705, 1461, 1471, 2636, 2938, 3554
BseNI ACTGG 4 cut(s) 341, 1111, 3256, 3435
BseRI GAGGAG 4 cut(s) 42, 804, 1700, 3098
BseSI GKGCMC 3 cut(s) 513, 576, 2241
BseXI GCAGC 3 cut(s) 464, 1267, 2634
BseYI CCCAGC 1 cut(s) 3629
BsgI GTGCAG 1 cut(s) 1719
BshFI GGCC 7 cut(s) 26, 1462, 2636, 3621, 3674, 3699, 3853
BshNI GGYRCC 2 cut(s) 3683, 3825
BsiHKAI GWGCWC 2 cut(s) 1381, 3278
BsiSI CCGG 7 cut(s) 147, 163, 1869, 3150, 3368, 3443, 3748
BslFI GGGAC 3 cut(s) 2663, 2922, 3248
BsmBI CGTCTC 3 cut(s) 1460, 3665, 3783
BsmFI GGGAC 3 cut(s) 2663, 2922, 3248
BsmI GAATGC 1 cut(s) 3508
BsnI GGCC 7 cut(s) 26, 1462, 2636, 3621, 3674, 3699, 3853
Bso31I GGTCTC 2 cut(s) 1616, 3374
Bsp119I TTCGAA 4 cut(s) 254, 1567, 1791, 3715
Bsp1286I GDGCHC 5 cut(s) 513, 576, 1381, 2241, 3278
Bsp13I TCCGGA 1 cut(s) 3442
Bsp19I CCATGG 1 cut(s) 3799
BspACI CCGC 3 cut(s) 448, 3051, 3449
BspANI GGCC 7 cut(s) 26, 1462, 2636, 3621, 3674, 3699, 3853
BspCNI CTCAG 6 cut(s) 706, 1462, 1470, 2637, 2937, 3555
BspEI TCCGGA 1 cut(s) 3442
BspLI GGNNCC 5 cut(s) 402, 765, 2971, 3685, 3827
BspMI ACCTGC 1 cut(s) 1508
BspPI GGATC 5 cut(s) 295, 353, 541, 1205, 3646
BspQI GCTCTTC 1 cut(s) 3745
BspT104I TTCGAA 4 cut(s) 254, 1567, 1791, 3715
BspT107I GGYRCC 2 cut(s) 3683, 3825
BspTNI GGTCTC 2 cut(s) 1616, 3374
BsrBI CCGCTC 1 cut(s) 3051
BsrDI GCAATG 1 cut(s) 1582
BsrI ACTGG 4 cut(s) 341, 1111, 3256, 3435
BssECI CCNNGG 6 cut(s) 13, 642, 851, 852, 1632, 3799
BssNI GRCGYC 3 cut(s) 639, 1360, 3684
BssSI CACGAG 1 cut(s) 784
BssT1I CCWWGG 1 cut(s) 3799
Bst2BI CACGAG 1 cut(s) 784
Bst2UI CCWGG 4 cut(s) 590, 853, 2811, 3226
Bst6I CTCTTC 5 cut(s) 274, 895, 969, 3717, 3745
BstACI GRCGYC 3 cut(s) 639, 1360, 3684
BstBI TTCGAA 4 cut(s) 254, 1567, 1791, 3715
BstC8I GCNNGC 8 cut(s) 381, 450, 1237, 1426, 1734, 2115, 2400, 3755
BstDSI CCRYGG 2 cut(s) 1632, 3799
BstEII GGTNACC 1 cut(s) 3768
BstENI CCTNNNNNAGG 1 cut(s) 725
BstF5I GGATG 9 cut(s) 55, 172, 449, 525, 1003, 1086, 1354, 3094, 3809
BstH2I RGCGCY 3 cut(s) 2225, 2628, 3687
BstHHI GCGC 5 cut(s) 2130, 2224, 2580, 2627, 3686
BstMWI GCNNNNNNNGC 5 cut(s) 476, 688, 2633, 2746, 3296
BstNI CCWGG 4 cut(s) 590, 853, 2811, 3226
BstNSI RCATGY 4 cut(s) 1170, 1428, 1505, 2699
BstPAI GACNNNNGTC 1 cut(s) 584
BstPI GGTNACC 1 cut(s) 3768
BstSCI CCNGG 6 cut(s) 162, 588, 851, 2809, 3149, 3224
BstSFI CTRYAG 2 cut(s) 1824, 2721
BstSLI GKGCMC 3 cut(s) 513, 576, 2241
BstV1I GCAGC 3 cut(s) 464, 1267, 2634
BstV2I GAAGAC 5 cut(s) 337, 1574, 2295, 3547, 3564
BstX2I RGATCY 5 cut(s) 472, 799, 1197, 1255, 1828
BstXI CCANNNNNNTGG 1 cut(s) 1710
BstYI RGATCY 5 cut(s) 472, 799, 1197, 1255, 1828
BsuI GTATCC 3 cut(s) 926, 1993, 2431
BsuRI GGCC 7 cut(s) 26, 1462, 2636, 3621, 3674, 3699, 3853
BtgI CCRYGG 2 cut(s) 1632, 3799
BtsCI GGATG 9 cut(s) 55, 172, 449, 525, 1003, 1086, 1354, 3094, 3809
BtsI GCAGTG 2 cut(s) 2020, 2532
BtsIMutI CAGTG 7 cut(s) 114, 675, 943, 1338, 1666, 2020, 2532
BveI ACCTGC 1 cut(s) 1508
Cac8I GCNNGC 8 cut(s) 381, 450, 1237, 1426, 1734, 2115, 2400, 3755
CfoI GCGC 5 cut(s) 2130, 2224, 2580, 2627, 3686
Cfr13I GGNCC 5 cut(s) 318, 718, 2635, 3619, 3852
CseI GACGC 3 cut(s) 647, 707, 1349
CsiI ACCWGGT 1 cut(s) 3224
Csp6I GTAC 4 cut(s) 794, 1437, 2290, 2340
CviQI GTAC 4 cut(s) 794, 1437, 2290, 2340
DinI GGCGCC 1 cut(s) 3685
EaeI YGGCCR 1 cut(s) 3697
Eam1104I CTCTTC 5 cut(s) 274, 895, 969, 3717, 3745
EarI CTCTTC 5 cut(s) 274, 895, 969, 3717, 3745
Eco130I CCWWGG 1 cut(s) 3799
Eco147I AGGCCT 1 cut(s) 26
Eco31I GGTCTC 2 cut(s) 1616, 3374
Eco47I GGWCC 2 cut(s) 318, 718
Eco47III AGCGCT 2 cut(s) 2223, 2626
Eco57I CTGAAG 3 cut(s) 1212, 1247, 2268
Eco91I GGTNACC 1 cut(s) 3768
EcoNI CCTNNNNNAGG 1 cut(s) 725
EcoO109I RGGNCCY 3 cut(s) 318, 718, 3619
EcoO65I GGTNACC 1 cut(s) 3768
EcoRII CCWGG 4 cut(s) 588, 851, 2809, 3224
EcoT14I CCWWGG 1 cut(s) 3799
EcoT22I ATGCAT 2 cut(s) 1430, 1953
EgeI GGCGCC 1 cut(s) 3685
EheI GGCGCC 1 cut(s) 3685
ErhI CCWWGG 1 cut(s) 3799
Esp3I CGTCTC 3 cut(s) 1460, 3665, 3783
FaqI GGGAC 3 cut(s) 2663, 2922, 3248
FauI CCCGC 3 cut(s) 441, 3044, 3442
FbaI TGATCA 3 cut(s) 118, 2418, 3198
FblI GTMKAC 4 cut(s) 1555, 2523, 2724, 3192
Fnu4HI GCNGC 3 cut(s) 453, 1281, 2623
FokI GGATG 9 cut(s) 42, 179, 456, 512, 1010, 1093, 1361, 3101, 3816
Fsp4HI GCNGC 3 cut(s) 453, 1281, 2623
FspI TGCGCA 2 cut(s) 2129, 2579
GlaI GCGC 5 cut(s) 2129, 2223, 2579, 2626, 3685
GluI GCNGC 3 cut(s) 453, 1281, 2623
GsaI CCCAGC 1 cut(s) 3633
GsuI CTGGAG 2 cut(s) 2483, 3321
HaeII RGCGCY 3 cut(s) 2225, 2628, 3687
HaeIII GGCC 7 cut(s) 26, 1462, 2636, 3621, 3674, 3699, 3853
HapII CCGG 7 cut(s) 147, 163, 1869, 3150, 3368, 3443, 3748
HgaI GACGC 3 cut(s) 647, 707, 1349
HhaI GCGC 5 cut(s) 2130, 2224, 2580, 2627, 3686
Hin1I GRCGYC 3 cut(s) 639, 1360, 3684
Hin6I GCGC 5 cut(s) 2128, 2222, 2578, 2625, 3684
HinP1I GCGC 5 cut(s) 2128, 2222, 2578, 2625, 3684
HincII GTYRAC 3 cut(s) 142, 960, 3193
HindII GTYRAC 3 cut(s) 142, 960, 3193
HindIII AAGCTT 3 cut(s) 206, 2564, 3718
HpaII CCGG 7 cut(s) 147, 163, 1869, 3150, 3368, 3443, 3748
Hpy166II GTNNAC 9 cut(s) 142, 960, 1437, 1556, 2524, 2705, 2725, 3193, 3865
Hpy8I GTNNAC 9 cut(s) 142, 960, 1437, 1556, 2524, 2705, 2725, 3193, 3865
Hpy99I CGWCG 5 cut(s) 356, 430, 570, 3587, 3683
HpyAV CCTTC 8 cut(s) 1000, 1202, 1270, 1516, 1813, 2685, 3086, 3395
HpyCH4IV ACGT 2 cut(s) 354, 2228
HpyF10VI GCNNNNNNNGC 5 cut(s) 476, 688, 2633, 2746, 3296
HpySE526I ACGT 2 cut(s) 354, 2228
Hsp92I GRCGYC 3 cut(s) 639, 1360, 3684
HspAI GCGC 5 cut(s) 2128, 2222, 2578, 2625, 3684
KasI GGCGCC 1 cut(s) 3683
Kpn2I TCCGGA 1 cut(s) 3442
Ksp22I TGATCA 3 cut(s) 118, 2418, 3198
LguI GCTCTTC 1 cut(s) 3745
LmnI GCTCC 4 cut(s) 892, 1376, 2754, 3750
Lsp1109I GCAGC 3 cut(s) 464, 1267, 2634
LweI GCATC 5 cut(s) 950, 1222, 1735, 2457, 3168
MabI ACCWGGT 1 cut(s) 3224
MaeII ACGT 2 cut(s) 354, 2228
MbiI CCGCTC 1 cut(s) 3051
MflI RGATCY 5 cut(s) 472, 799, 1197, 1255, 1828
MhlI GDGCHC 5 cut(s) 513, 576, 1381, 2241, 3278
MlsI TGGCCA 1 cut(s) 3699
MluNI TGGCCA 1 cut(s) 3699
Mly113I GGCGCC 1 cut(s) 3684
MlyI GAGTC 5 cut(s) 875, 1143, 1226, 2035, 3230
MmeI TCCRAC 3 cut(s) 408, 2776, 3055
Mox20I TGGCCA 1 cut(s) 3699
Mph1103I ATGCAT 2 cut(s) 1430, 1953
MroI TCCGGA 1 cut(s) 3442
MroXI GAANNNNTTC 1 cut(s) 3438
MscI TGGCCA 1 cut(s) 3699
MslI CAYNNNNRTG 6 cut(s) 542, 844, 1165, 2146, 2700, 3872
Msp20I TGGCCA 1 cut(s) 3699
MspA1I CMGCKG 1 cut(s) 3299
MspI CCGG 7 cut(s) 147, 163, 1869, 3150, 3368, 3443, 3748
MspR9I CCNGG 6 cut(s) 164, 590, 853, 2811, 3151, 3226
Mva1269I GAATGC 1 cut(s) 3508
MvaI CCWGG 4 cut(s) 590, 853, 2811, 3226
MwoI GCNNNNNNNGC 5 cut(s) 476, 688, 2633, 2746, 3296
NarI GGCGCC 1 cut(s) 3684
NciI CCSGG 2 cut(s) 164, 3151
NcoI CCATGG 1 cut(s) 3799
NlaIV GGNNCC 5 cut(s) 402, 765, 2971, 3685, 3827
NmeAIII GCCGAG 1 cut(s) 667
NmuCI GTSAC 8 cut(s) 17, 228, 1399, 1691, 2370, 2987, 3220, 3228
NsbI TGCGCA 2 cut(s) 2129, 2579
NsiI ATGCAT 2 cut(s) 1430, 1953
NspI RCATGY 4 cut(s) 1170, 1428, 1505, 2699
NspV TTCGAA 4 cut(s) 254, 1567, 1791, 3715
PaeI GCATGC 1 cut(s) 1428
PaqCI CACCTGC 1 cut(s) 1508
PasI CCCWGGG 1 cut(s) 852
PceI AGGCCT 1 cut(s) 26
PciSI GCTCTTC 1 cut(s) 3745
PcsI WCGNNNNNNNCGW 2 cut(s) 639, 3582
PctI GAATGC 1 cut(s) 3508
PdmI GAANNNNTTC 1 cut(s) 3438
PfeI GAWTC 8 cut(s) 515, 770, 1066, 2018, 2261, 2802, 3036, 3453
PflFI GACNNNGTC 2 cut(s) 701, 1133
PflMI CCANNNNNTGG 1 cut(s) 3764
PfoI TCCNGGA 3 cut(s) 162, 588, 3149
PkrI GCNGC 3 cut(s) 454, 1282, 2624
PleI GAGTC 5 cut(s) 875, 1142, 1225, 2035, 3230
PluTI GGCGCC 1 cut(s) 3687
PpsI GAGTC 5 cut(s) 875, 1142, 1225, 2035, 3230
PpuMI RGGWCCY 2 cut(s) 318, 718
PshAI GACNNNNGTC 1 cut(s) 584
PshBI ATTAAT 1 cut(s) 842
PsiI TTATAA 1 cut(s) 1961
Psp5II RGGWCCY 2 cut(s) 318, 718
Psp6I CCWGG 4 cut(s) 588, 851, 2809, 3224
PspEI GGTNACC 1 cut(s) 3768
PspFI CCCAGC 1 cut(s) 3629
PspGI CCWGG 4 cut(s) 588, 851, 2809, 3224
PspN4I GGNNCC 5 cut(s) 402, 765, 2971, 3685, 3827
PspPI GGNCC 5 cut(s) 318, 718, 2635, 3619, 3852
PspPPI RGGWCCY 2 cut(s) 318, 718
PsrI GAACNNNNNNTAC 2 cut(s) 849, 881
PsuI RGATCY 5 cut(s) 472, 799, 1197, 1255, 1828
PsyI GACNNNGTC 2 cut(s) 701, 1133
PvuII CAGCTG 1 cut(s) 3299
RsaI GTAC 4 cut(s) 795, 1438, 2291, 2341
RsaNI GTAC 4 cut(s) 794, 1437, 2290, 2340
RseI CAYNNNNRTG 6 cut(s) 542, 844, 1165, 2146, 2700, 3872
SalI GTCGAC 1 cut(s) 3191
SapI GCTCTTC 1 cut(s) 3745
SatI GCNGC 3 cut(s) 453, 1281, 2623
Sau96I GGNCC 5 cut(s) 318, 718, 2635, 3619, 3852
SchI GAGTC 5 cut(s) 875, 1143, 1226, 2035, 3230
ScrFI CCNGG 6 cut(s) 164, 590, 853, 2811, 3151, 3226
SduI GDGCHC 5 cut(s) 513, 576, 1381, 2241, 3278
SexAI ACCWGGT 1 cut(s) 3224
SfaNI GCATC 5 cut(s) 950, 1222, 1735, 2457, 3168
SfcI CTRYAG 2 cut(s) 1824, 2721
SfoI GGCGCC 1 cut(s) 3685
SfuI TTCGAA 4 cut(s) 254, 1567, 1791, 3715
SinI GGWCC 2 cut(s) 318, 718
SmiMI CAYNNNNRTG 6 cut(s) 542, 844, 1165, 2146, 2700, 3872
SmlI CTYRAG 9 cut(s) 79, 366, 1742, 1897, 2189, 2425, 2741, 2864, 3662
SmoI CTYRAG 9 cut(s) 79, 366, 1742, 1897, 2189, 2425, 2741, 2864, 3662
SpeI ACTAGT 1 cut(s) 2996
SphI GCATGC 1 cut(s) 1428
SseBI AGGCCT 1 cut(s) 26
SsiI CCGC 3 cut(s) 448, 3051, 3449
SspDI GGCGCC 1 cut(s) 3683
SspI AATATT 3 cut(s) 2069, 2213, 3283
StuI AGGCCT 1 cut(s) 26
StyD4I CCNGG 6 cut(s) 162, 588, 851, 2809, 3149, 3224
StyI CCWWGG 1 cut(s) 3799
TaiI ACGT 2 cut(s) 357, 2231
TaqII GACCGA 1 cut(s) 596
TatI WGTACW 2 cut(s) 1436, 2339
TfiI GAWTC 8 cut(s) 515, 770, 1066, 2018, 2261, 2802, 3036, 3453
TscAI CASTG 7 cut(s) 121, 675, 943, 1345, 1666, 2020, 2539
TseFI GTSAC 8 cut(s) 17, 228, 1399, 1691, 2370, 2987, 3220, 3228
TseI GCWGC 3 cut(s) 452, 1280, 2622
Tsp45I GTSAC 8 cut(s) 17, 228, 1399, 1691, 2370, 2987, 3220, 3228
TspGWI ACGGA 2 cut(s) 1210, 3341
TspRI CASTG 7 cut(s) 121, 675, 943, 1345, 1666, 2020, 2539
Tth111I GACNNNGTC 2 cut(s) 701, 1133
Van91I CCANNNNNTGG 1 cut(s) 3764
VpaK11BI GGWCC 2 cut(s) 318, 718
VspI ATTAAT 1 cut(s) 842
XagI CCTNNNNNAGG 1 cut(s) 725
XapI RAATTY 5 cut(s) 1181, 1209, 1991, 2334, 2572
XceI RCATGY 4 cut(s) 1170, 1428, 1505, 2699
XcmI CCANNNNNNNNNTGG 1 cut(s) 280
XmiI GTMKAC 4 cut(s) 1555, 2523, 2724, 3192
XmnI GAANNNNTTC 1 cut(s) 3438
Zsp2I ATGCAT 2 cut(s) 1430, 1953
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.