Rroxscaffold_4G00321580

disease resistance

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Forward (+)
51189874 .. 51202537
12664 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00321580.1

Sequence Viewer

Length: 3702 bp
ATGGCTCTGTTCCGAGGTCACAAGGCCTCCCTTTCCAGATATACTGCTTCTCCTTATCCATTTAGCTATCACGTATTCTTGAGCTTTAGAGGTGAAGACACCCGAAAGAACTTCGCTGATCACCTCTACACTGCCCTCGTCAACGCCGGATTTCATACTTTCCGGGATGACGGACTCGAGAAAGGAGAGAATATCAAGCAAGAGCTTGAGAATGCCATTCGAGAGTCACGAACTTCTGTCATTGTGTTTTCGAAAGACTACGCCTCTTCCAGATGGTGTCTGGAGGAGCTTGTCATGATCCTTGAACGCAAGAGGACCTCCAATCATTTCGTTTTACCAGTCTTCTACGACGTTGATCCATCCCATCTGAGGAACCAGACTGCAAGTGTTGCAGAAACATTTACTAGACACCAGAAAACTCAATCGTCGAGTAAAGTGAGAAGATGGCGGGCAGCACTTAAACAAGTTGCAGATCTAGCAGGAATGAATTTACAAAATGAAGCTGACGGGCATGAGTCAAAGTTTATCCAGAAGATTGTTGGAGTGATTCATGACAGGCTAGGTCGTGTCCCCCTAACCGATGTCCAGAAGGAATTAGAGGATAAGTTGTTATCTGTTAACCCTGTTCTTGATGACGCCGAGGGGAAGCAACTGAAATTCCAAACGACTGTGAAGCCATGGCTCCATAAGCTTAAAGAGGCTGTCTATGAGGCTGAGGACCTGTTGCAGGAGATCAAAACACAAGTGTTGAGGCAAAAGAAGAATGACAAATATGGGAGTAGCACCAGTAAGGTACAAGAGCTCATCTCTACTCAATCTCATGCTTTTGACTCAGCTTTAATATACTCCAGGGTAGATGAAGTTCTTGAAAAACTAGACAACATTTCAAAGCAGACAAAAGATGTCCTTGATTCGGAAGTAACCACTGGACACAGTGTATCACAACCACTACCGTCAATTTCTTTGGTAGAAAAGTCTGTGTATGGAAGAGATGAAGAGAAAGAAAGATTCGTTAAATTATTGCTATCAGATGATGAGACTGGCAATGAAACAGGTGTGATTCCTATTGTGGGTATGGGTGGGATCGGAAAGACCACCCTTGCCCAGTTTGTATACAATGATGTTAGAGTGAAGCAACATTTTCACCTCCAAGCATGGGTATGCGTTTCAAAAGAATTTGATGTTTTTAGGATCTCGCAACACATTTATGAGTCCCTCACCTCAGAAGCTTGCCAAAGCACAAACCTAGATCTGCTTCTATCAAAGTTGCAGGCAACTTTGAGGGGGAAAAGGTTCTTCTTTGTTCTTGATGACATCTGGAACAAGAATTATAACCAGTTGGAACTCTTAAGGCGTCCCCTTGAGTCTGGAGCACATGGAAGCAAGATCATTGTCACAACACGAGATGAAAATGTTGCACGTATGATGGGTAGCCTTAAAGCTCACAGTCTCATGCCAATGTCTGAGGAAGATAGCTGGTCGTTATTTGAAAAACATGCCTTGAAAAATGGAGGTGTTCCTACACACTCACATCTTGAAAAAATCGGTAGACAAATTGTTCGAAAGTGCAATGGTCTTCCTTTGGCTATTAAGTCCCTTGGGGGTCTCTTATGTTCTAAATTGTTAGTGGAGGAATGGGAAAGTATATTGAACAGTGACATGTGGGAGTTCTCACTGGATGAGAGTGACATTCTGCCATCCCTATGGTTGAGCTATCTAGATCTGCCTCTACATCTCAAGCGTTGTTTTGCCTATTGTTCACTATATCCCAAGAACTATAAATTTCAAAAATCAGAGTTGATTTACTTGTGGAAGGCTGAAGATCTATTGCAACATAAAAAAAACAAAATGGCAGAAGAAGTCGGACAAGACTACTTCAATGATCTAATCTCAAGATCATTTTTTCAACTTTCATCAAGTTCCGATGAATACTTCATCATGCATGACGTTATCAATGATTTAGCAAGCTTTGTATCTGGAGAATTTTATTTTAGGTGGGAGGGTACTGATTCACCCAATAGTTTGAGCAAGACTCGTCACTTTTCATATATGTCTAGATATCATGATGAGGCTGATAGCCTAGCGATGTTTGAGGCTTTACAGCAAGCTAAATGTTTGCGCACCTTTCTATCATTAAAACCTGCTCGTTGGTGGTTGCAGTTGAACAAAGGACGATGTGATATATTGCCAAAATCAGAGTGTTTAAGAGTGCTAAAGTTATATGCGTACAATATTGAGGAATTGCCTGATTCAATTCACAACTTCAAACATCTTACGTACTTGGATTTGTCTGCGACTCCCATAAAAAAGTTAACTGATACAGTTTGTACTTTGTATAACTTGCAAGTATTGTTGTTGTCAAACTGTCGAGGCCTTATTGAACTGCCAGCCAAGTTGCGAAGATTGATCAACTTGAGCCATCTGGATATTACAAAGACAAAGCTAAAAAAGATGCCACCACAAATGGGGAGGTTGAAAGACCTCCAGATGCTACCAGAGTTTGTCCTAGACAAGCACACTGCTGGGGATAATTTGGCAGAGTTAAAGAAGCTTGAAAAATTGAGTGGAAAACTTCGTATCTCAGGGCTTGTGCATAGCAGCGGTTTGGAGGCCTACATACTGAGGGACAAGAAGTTTCTTAAGGAACTGGTTTTGGATTGGGGACGAAGGCATACCTTCGCTTACATTTATACGGTAGAAGAAAGAGAAGTGCTTGAGAAGCTCCAACCTCACCTGAACCTGGAAAGGCTTACAATTAAAGGTTATGGAGGCAAAATGTTTTCAGGTTGGTCAGAATATTATCTTTCCTCTGCCCTTGGTTACCTTGAACTTGTTGATTGTGTGAATTGTATCTCCTTGCCACCATTGGGACAGCTACCTTCCCTCAGAGAGCTTCATATTTCTAAGTTACATGGAGTGGTGTCTGTTGGTTCTGAATTCTATTATGGTGACGGCAACACTTCTAGTGTGAATAAACCATTTAGATCTCTACGGTCTTTGAAATTCGACAATATGAGTGGATGGAAAGATTGGTCTTATGGTGGAGGTGACGATAATGAAGGTGGGGTTTTTCCTAATCTCGTTCATCTTGAAGTGATAGACTGTCCCAATCTTACCGGGAGATTAGTTTCAGACAGTCTCCCATCTCTTGTGTCTTTGACGGTATTGCATTGCCCAGAATTGGAATGTTTTCCGGAAGATGGATTCCTGTCAAAGTTAAAATCACTTGAACAAGGAAAAGTGAATGCAAAGAGTATTCAGAATCTGAACAAGGGTCTCCGAACACTCACCTCTCTTGAAAGATTGACACTTGAGTTTAGCTGCGACGAAAAAGTAGATTGGTTTGCGGAGGAGCAGGCGGGGATGTTTCCCAGCATTCTCACATATCTCACGATCTGCCGTCTGAATTGTGAGACCATCAACGGTGCCAAGTGGTTTGCCAATCTCAACTCTCTTCAAGAATTGGAGATTTGGGATTGCCCTGCGCTCCGGTGCTTGCCGGATAGTGGACTACCCTCTTCTCTTCAACGCTTGCAGATTTGGCGTTGCCCTGCTCTGCAGTGCTTGCCGGATAGTGGACTACCCTCTTCTCTTACTTACCTATGTATCCATGAATGTCCTTTGCTTGAGAAAAGGTGCCAAAGAGAGACGGGTGAAGATTGGCCCAAGATTGTTCACATCAAGTGCATATCAATTCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

1233

Amino Acids

140.97

Weight (kDa)

6.87

Isoelectric Point (pI)

49.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 23 - 191 7.6e-48 TIR domain
TIR_2 PF13676 25 - 123 5e-18 TIR domain
Rx_N PF18052 197 - 257 6.1e-13 Rx N-terminal domain
NB-ARC PF00931 333 - 502 5.1e-38 NB-ARC domain
WHD_DRP PF23559 588 - 655 2.8e-23 Disease resistance protein Winged helix domain
LRR_14 PF23598 732 - 1003 1.6e-20 Leucine-rich repeat region
LRR_R13L1-DRL21 PF25019 845 - 969 1.5e-28 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000035)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G14470 AT3G14470
fragaria_vesca FvH4_1g01220 FvH4_1g01230 FvH4_3g24551 FvH4_3g24552 FvH4_4g29310 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_6g39860 FvH4_6g39861 FvH4_7g11380
malus_domestica MD00G1072900.v1.1 MD00G1073100.v1.1 MD00G1120600.v1.1 MD00G1120900.v1.1 MD00G1121000.v1.1 MD00G1121200.v1.1 MD00G1152300.v1.1 MD00G1203600.v1.1 MD00G1203700.v1.1 MD02G1250900.v1.1 MD02G1251900.v1.1 MD02G1252800.v1.1 MD02G1277100.v1.1 MD02G1277200.v1.1 MD02G1277400.v1.1 MD02G1286100.v1.1 MD02G1286200.v1.1 MD02G1286900.v1.1 MD03G1006200.v1.1 MD03G1015300.v1.1 MD03G1015500.v1.1 MD03G1015900.v1.1 MD03G1016000.v1.1 MD03G1024900.v1.1 MD03G1025000.v1.1 MD03G1025500.v1.1 MD03G1026000.v1.1 MD03G1026500.v1.1 MD03G1031800.v1.1 MD03G1072200.v1.1 MD07G1028000.v1.1 MD07G1028300.v1.1 MD07G1029400.v1.1 MD07G1029500.v1.1 MD07G1040300.v1.1 MD07G1044500.v1.1 MD07G1045100.v1.1 MD07G1045500.v1.1 MD07G1050700.v1.1 MD07G1050900.v1.1 MD07G1055800.v1.1 MD07G1056200.v1.1 MD07G1056600.v1.1 MD07G1057100.v1.1 MD07G1057200.v1.1 MD08G1056500.v1.1 MD08G1056600.v1.1 MD08G1056700.v1.1 MD08G1056800.v1.1 MD08G1128800.v1.1 MD08G1129500.v1.1 MD08G1130000.v1.1 MD11G1066700.v1.1 MD11G1066800.v1.1 MD11G1066900.v1.1 MD11G1067000.v1.1 MD11G1067500.v1.1 MD11G1069800.v1.1 MD11G1070400.v1.1 MD11G1071100.v1.1 MD11G1071200.v1.1 MD11G1077200.v1.1 MD11G1077700.v1.1 MD11G1077900.v1.1 MD11G1078100.v1.1 MD11G1078300.v1.1 MD11G1078500.v1.1 MD11G1135200.v1.1 MD11G1135400.v1.1 MD11G1152900.v1.1 MD11G1153000.v1.1 MD17G1056800.v1.1
prunus_persica Prupe.2G037800_v2.0.a1 Prupe.2G037800_v2.0.a1 Prupe.2G037800_v2.0.a1 Prupe.2G037800_v2.0.a1 Prupe.2G040500_v2.0.a1 Prupe.2G040700_v2.0.a1 Prupe.2G043000_v2.0.a1 Prupe.2G043100_v2.0.a1 Prupe.2G043200_v2.0.a1 Prupe.2G046000_v2.0.a1 Prupe.2G046300_v2.0.a1 Prupe.2G046400_v2.0.a1 Prupe.2G046400_v2.0.a1 Prupe.2G046700_v2.0.a1 Prupe.2G046900_v2.0.a1 Prupe.2G051100_v2.0.a1 Prupe.2G052200_v2.0.a1 Prupe.2G053600_v2.0.a1 Prupe.2G053600_v2.0.a1 Prupe.2G053600_v2.0.a1 Prupe.2G053600_v2.0.a1 Prupe.2G053700_v2.0.a1 Prupe.2G053800_v2.0.a1 Prupe.2G053900_v2.0.a1 Prupe.2G054000_v2.0.a1 Prupe.2G054100_v2.0.a1 Prupe.2G054200_v2.0.a1 Prupe.2G054300_v2.0.a1 Prupe.2G054300_v2.0.a1 Prupe.2G054300_v2.0.a1 Prupe.2G054300_v2.0.a1 Prupe.2G054500_v2.0.a1 Prupe.2G054700_v2.0.a1 Prupe.4G286000_v2.0.a1 Prupe.4G286000_v2.0.a1 Prupe.4G286000_v2.0.a1 Prupe.6G129800_v2.0.a1 Prupe.6G130000_v2.0.a1 Prupe.6G130000_v2.0.a1
pyrus_communis pycom02g23740 pycom02g23750 pycom02g24320 pycom03g00620 pycom03g01280 pycom03g01320 pycom03g01350 pycom03g01360 pycom03g01370 pycom03g01380 pycom03g01390 pycom03g02160 pycom03g02170 pycom03g05850 pycom03g09810 pycom07g02120 pycom07g02790 pycom07g02800 pycom07g03210 pycom07g03660 pycom07g03670 pycom07g04350 pycom08g10780 pycom08g10840 pycom08g10910 pycom11g05650 pycom11g05670 pycom11g05800 pycom11g05880 pycom11g05890 pycom11g05940 pycom11g06490 pycom11g06500 pycom11g06520 pycom11g06560 pycom11g06570 pycom11g11230 pycom11g13650 pycom17g05700
rosa_chinensis RchiOBHm_Chr1g0318341 RchiOBHm_Chr1g0318901 RchiOBHm_Chr1g0318931 RchiOBHm_Chr1g0327301 RchiOBHm_Chr1g0328491 RchiOBHm_Chr1g0336761 RchiOBHm_Chr1g0336831 RchiOBHm_Chr1g0340721 RchiOBHm_Chr1g0342461 RchiOBHm_Chr1g0342471 RchiOBHm_Chr1g0342481 RchiOBHm_Chr1g0346131 RchiOBHm_Chr1g0346191 RchiOBHm_Chr1g0346211 RchiOBHm_Chr1g0346241 RchiOBHm_Chr1g0346261 RchiOBHm_Chr1g0346281 RchiOBHm_Chr1g0346461 RchiOBHm_Chr1g0346471 RchiOBHm_Chr1g0346481 RchiOBHm_Chr1g0346501 RchiOBHm_Chr1g0347691 RchiOBHm_Chr1g0347701 RchiOBHm_Chr1g0347751 RchiOBHm_Chr1g0347791 RchiOBHm_Chr1g0347971 RchiOBHm_Chr1g0349661 RchiOBHm_Chr1g0349741 RchiOBHm_Chr1g0357561 RchiOBHm_Chr3g0492601 RchiOBHm_Chr5g0039181 RchiOBHm_Chr5g0039231 RchiOBHm_Chr5g0039241 RchiOBHm_Chr5g0039251 RchiOBHm_Chr5g0039531 RchiOBHm_Chr5g0044001 RchiOBHm_Chr5g0044571 RchiOBHm_Chr5g0044611 RchiOBHm_Chr5g0044631 RchiOBHm_Chr5g0044641 RchiOBHm_Chr5g0044651 RchiOBHm_Chr5g0044661 RchiOBHm_Chr5g0044681 RchiOBHm_Chr5g0045221 RchiOBHm_Chr5g0045901 RchiOBHm_Chr5g0045991 RchiOBHm_Chr5g0046001 RchiOBHm_Chr5g0046011
rosa_laevigata RLG00000028715 RLG00000028718 RLG00000029034 RLG00000029926 RLG00000030516 RLG00000034285 RLG00000034288
rosa_multiflora Rmu_co7987576.1_g000001 Rmu_co8028038.1_g000001 Rmu_co8104858.1_g000001 Rmu_co8185828.1_g000001 Rmu_co8227651.1_g000001 Rmu_co8235061.1_g000001 Rmu_co8246845.1_g000001 Rmu_co8254315.1_g000001 Rmu_co8284899.1_g000001 Rmu_co8401461.1_g000001 Rmu_co8475625.1_g000001 Rmu_co8502681.1_g000001 Rmu_sc0000250.1_g000005 Rmu_sc0000492.1_g000001 Rmu_sc0000533.1_g000004 Rmu_sc0000795.1_g000114 Rmu_sc0000831.1_g000039 Rmu_sc0000907.1_g000014 Rmu_sc0000907.1_g000034 Rmu_sc0001035.1_g000007 Rmu_sc0001035.1_g000011 Rmu_sc0001035.1_g000012 Rmu_sc0001099.1_g000003 Rmu_sc0001157.1_g000008 Rmu_sc0001212.1_g000016 Rmu_sc0001212.1_g000017 Rmu_sc0001304.1_g000027 Rmu_sc0001304.1_g000033 Rmu_sc0001773.1_g000019 Rmu_sc0001836.1_g000069 Rmu_sc0001856.1_g000004 Rmu_sc0002286.1_g000003 Rmu_sc0002286.1_g000004 Rmu_sc0002286.1_g000005 Rmu_sc0002286.1_g000007 Rmu_sc0002286.1_g000015 Rmu_sc0002495.1_g000025 Rmu_sc0002545.1_g000008 Rmu_sc0002545.1_g000009 Rmu_sc0002662.1_g000009 Rmu_sc0003363.1_g000019 Rmu_sc0003363.1_g000022 Rmu_sc0003600.1_g000057 Rmu_sc0003809.1_g000036 Rmu_sc0003809.1_g000037 Rmu_sc0005008.1_g000026 Rmu_sc0005008.1_g000028 Rmu_sc0005028.1_g000001 Rmu_sc0005144.1_g000022 Rmu_sc0005167.1_g000004 Rmu_sc0005626.1_g000005 Rmu_sc0005626.1_g000018 Rmu_sc0006228.1_g000011 Rmu_sc0006609.1_g000007 Rmu_sc0006609.1_g000009 Rmu_sc0006609.1_g000015 Rmu_sc0006609.1_g000016 Rmu_sc0006609.1_g000017 Rmu_sc0006609.1_g000018 Rmu_sc0007060.1_g000003 Rmu_sc0007318.1_g000011 Rmu_sc0007992.1_g000002 Rmu_sc0009172.1_g000001 Rmu_sc0010151.1_g000010 Rmu_sc0010151.1_g000011 Rmu_sc0011778.1_g000001 Rmu_sc0011778.1_g000005 Rmu_sc0011778.1_g000009 Rmu_sc0012293.1_g000001 Rmu_sc0012293.1_g000002 Rmu_sc0016606.1_g000001 Rmu_sc0016836.1_g000001 Rmu_sc0021084.1_g000008 Rmu_sc0021449.1_g000001 Rmu_sc0026523.1_g000001 Rmu_sc0027133.1_g000003 Rmu_sc0038674.1_g000001 Rmu_ssc0000255.1_g000053 Rmu_ssc0000255.1_g000063 Rmu_ssc0000255.1_g000064 Rmu_ssc0000263.1_g000004 Rmu_ssc0000400.1_g000027
rosa_roxburghii Rroxscaffold_1G00035290 Rroxscaffold_1G00036350 Rroxscaffold_1G00036360 Rroxscaffold_1G00036400 Rroxscaffold_1G00036460 Rroxscaffold_1G00037000 Rroxscaffold_1G00040440 Rroxscaffold_1G00041890 Rroxscaffold_1G00041920 Rroxscaffold_4G00307460 Rroxscaffold_4G00307500 Rroxscaffold_4G00308500 Rroxscaffold_4G00308510 Rroxscaffold_4G00308770 Rroxscaffold_4G00313020 Rroxscaffold_4G00321580 Rroxscaffold_4G00323030 Rroxscaffold_4G00326850 Rroxscaffold_4G00328770 Rroxscaffold_4G00328780 Rroxscaffold_4G00329310 Rroxscaffold_5G00352110
rosa_rugosa Rorug01G0020700 Rorug01G0023000 Rorug01G0023100 Rorug01G0023200 Rorug01G0023300 Rorug01G0023400 Rorug01G0024500 Rorug01G0025100 Rorug01G0025200 Rorug01G0025400 Rorug01G0025400 Rorug01G0064700 Rorug01G0065300 Rorug01G0127600 Rorug01G0128000 Rorug01G0148000.1 Rorug01G0150500.1 Rorug01G0161600.1 Rorug01G0161800.1 Rorug01G0163600.1 Rorug01G0178300 Rorug01G0178500 Rorug01G0178700 Rorug01G0179900 Rorug01G0180200 Rorug01G0180300 Rorug01G0180400 Rorug01G0189000 Rorug01G0189100 Rorug01G0190500 Rorug01G0204800 Rorug05G0177200 Rorug05G0210300 Rorug05G0210300 Rorug05G0210300 Rorug05G0215400 Rorug05G0215400 Rorug05G0215400 Rorug05G0215400 Rorug05G0215500 Rorug05G0215600 Rorug05G0215800 Rorug05G0215900 Rorug05G0215900 Rorug05G0216000 Rorug05G0216200 Rorug05G0216300 Rorug05G0221900 Rorug07G0276700
rosa_samantha Rh1BG028400 Rh1BG033500 Rh1BG065100 Rh1BG073100 Rh1BG073200 Rh1BG117000 Rh1BG164000 Rh1BG164200 Rh1BG172100 Rh1BG173900 Rh1BG174100 Rh1BG188400 Rh1CG036000 Rh1CG036500 Rh1CG089900 Rh1CG140200 Rh1CG164700 Rh1CG182600 Rh1CG182900 Rh1CG183400 Rh1CG191300 Rh1CG192000 Rh1CG207700 Rh1DG033800 Rh1DG033900 Rh1DG096000 Rh5AG299900 Rh5AG304500 Rh5AG307100 Rh5AG307500 Rh5CG301600 Rh5CG329800 Rh5CG333800 Rh5DG311400 Rh5DG316300 Rh5DG316400 Rh5DG316700 Rh5DG316800 Rh5DG316900 Rh5DG326100 Rh7AG431900 Rh7CG451000
rosa_wichuraiana Rw0G007840 Rw0G009850 Rw0G013000 Rw0G015090 Rw0G021190 Rw1G002610 Rw1G004320 Rw1G006520 Rw1G007250 Rw1G012020 Rw1G013830 Rw1G014770 Rw1G016300 Rw1G016600 Rw1G016650 Rw1G017290 Rw1G017420 Rw1G017630 Rw1G017650 Rw1G017660 Rw1G017690 Rw1G017700 Rw1G018960 Rw5G024660 Rw5G024700 Rw5G024720 Rw5G024740 Rw5G024980 Rw5G027710 Rw5G027720 Rw5G027730 Rw5G027740 Rw5G027750 Rw5G028130 Rw5G028740 Rw5G028750 Rw5G028790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1332
Acc16I TGCGCA 1 cut(s) 2120
Acc36I ACCTGC 1 cut(s) 2149
AccB1I GGYRCC 2 cut(s) 3425, 3636
AccI GTMKAC 2 cut(s) 1113, 1549
AccIII TCCGGA 1 cut(s) 3193
AciI CCGC 4 cut(s) 448, 2601, 3347, 3359
AclWI GGATC 4 cut(s) 292, 350, 1091, 1199
AcsI RAATTY 7 cut(s) 487, 656, 1175, 1781, 1982, 2936, 3002
AcuI CTGAAG 1 cut(s) 1839
AcyI GRCGYC 2 cut(s) 636, 1354
AfaI GTAC 5 cut(s) 795, 2005, 2228, 2279, 2329
AflII CTTAAG 2 cut(s) 1348, 2639
AflIII ACRYGT 1 cut(s) 1659
AjnI CCWGG 2 cut(s) 848, 2739
Alw21I GWGCWC 2 cut(s) 804, 1375
Alw26I GTCTC 7 cut(s) 1031, 1454, 1610, 3143, 3281, 3407, 3641
AlwI GGATC 4 cut(s) 292, 350, 1091, 1199
AlwNI CAGNNNCTG 1 cut(s) 3265
Ama87I CYCGRG 1 cut(s) 176
Aor13HI TCCGGA 1 cut(s) 3193
AoxI GGCC 4 cut(s) 24, 2371, 2610, 3662
ApeKI GCWGC 3 cut(s) 452, 2598, 3321
ApoI RAATTY 7 cut(s) 487, 656, 1175, 1781, 1982, 2936, 3002
ArsI GACNNNNNNTTYG 2 cut(s) 1542, 1574
Asp700I GAANNNNTTC 2 cut(s) 1292, 3189
AspLEI GCGC 2 cut(s) 2121, 3487
AspS9I GGNCC 3 cut(s) 315, 718, 3663
AsuC2I CCSGG 2 cut(s) 164, 3118
AsuII TTCGAA 2 cut(s) 251, 1561
AvaI CYCGRG 1 cut(s) 176
AvaII GGWCC 2 cut(s) 315, 718
BaeI ACNNNNGTAYC 2 cut(s) 3589, 3622
BanI GGYRCC 2 cut(s) 3425, 3636
BanII GRGCYC 1 cut(s) 804
BauI CACGAG 1 cut(s) 1401
BbsI GAAGAC 3 cut(s) 102, 334, 1568
Bbv12I GWGCWC 2 cut(s) 804, 1375
BbvCI CCTCAGC 1 cut(s) 714
BbvI GCAGC 3 cut(s) 464, 2610, 3308
BceAI ACGGC 2 cut(s) 2968, 3384
BciT130I CCWGG 2 cut(s) 850, 2741
BciVI GTATCC 1 cut(s) 3617
BclI TGATCA 2 cut(s) 118, 2406
BcnI CCSGG 2 cut(s) 164, 3118
BcoDI GTCTC 7 cut(s) 1031, 1454, 1610, 3143, 3281, 3407, 3641
BfmI CTRYAG 1 cut(s) 3557
BfrI CTTAAG 2 cut(s) 1348, 2639
BfuAI ACCTGC 1 cut(s) 2149
BfuI GTATCC 1 cut(s) 3617
BglII AGATCT 5 cut(s) 472, 1249, 1720, 1822, 2984
BisI GCNGC 3 cut(s) 453, 2599, 3322
BlsI GCNGC 3 cut(s) 454, 2600, 3323
Bme1390I CCNGG 4 cut(s) 164, 850, 2741, 3118
Bme18I GGWCC 2 cut(s) 315, 718
BmeT110I CYCGRG 1 cut(s) 176
BmgT120I GGNCC 3 cut(s) 315, 718, 3663
BmiI GGNNCC 4 cut(s) 374, 683, 3427, 3638
BmrFI CCNGG 4 cut(s) 164, 850, 2741, 3118
BmrI ACTGGG 1 cut(s) 1099
BmsI GCATC 2 cut(s) 2442, 2478
BmuI ACTGGG 1 cut(s) 1099
BpiI GAAGAC 3 cut(s) 102, 334, 1568
BplI GAGNNNNNCTC 4 cut(s) 791, 823, 2017, 2049
BpmI CTGGAG 5 cut(s) 302, 832, 1389, 1998, 2468
Bpu10I CCTNAGC 1 cut(s) 714
Bpu14I TTCGAA 2 cut(s) 251, 1561
BpuEI CTTGAG 9 cut(s) 100, 227, 1382, 1721, 1876, 2434, 2735, 3332, 3647
BpuMI CCSGG 2 cut(s) 164, 3118
BsaAI YACGTR 3 cut(s) 73, 1421, 2277
BsaHI GRCGYC 2 cut(s) 636, 1354
BsaI GGTCTC 3 cut(s) 1610, 3281, 3407
BsaJI CCNNGG 6 cut(s) 13, 639, 677, 849, 1597, 2815
BsaWI WCCGGW 2 cut(s) 3193, 3489
BsaXI ACNNNNNCTCC 4 cut(s) 11, 34, 41, 64
Bse1I ACTGG 8 cut(s) 338, 786, 931, 1045, 1105, 1336, 1680, 2652
Bse3DI GCAATG 3 cut(s) 1051, 1576, 3169
BseAI TCCGGA 1 cut(s) 3193
BseBI CCWGG 2 cut(s) 850, 2741
BseDI CCNNGG 6 cut(s) 13, 639, 677, 849, 1597, 2815
BseGI GGATG 6 cut(s) 172, 359, 1684, 1697, 3026, 3369
BseMI GCAATG 3 cut(s) 1051, 1576, 3169
BseMII CTCAG 8 cut(s) 359, 705, 846, 1236, 1455, 2595, 2612, 2899
BseNI ACTGG 8 cut(s) 338, 786, 931, 1045, 1105, 1336, 1680, 2652
BseRI GAGGAG 2 cut(s) 299, 3365
BseXI GCAGC 3 cut(s) 464, 2610, 3308
BseYI CCCAGC 2 cut(s) 2522, 3371
BshFI GGCC 4 cut(s) 26, 2373, 2612, 3664
BshNI GGYRCC 2 cut(s) 3425, 3636
BsiHKAI GWGCWC 2 cut(s) 804, 1375
BsiHKCI CYCGRG 1 cut(s) 176
BsiSI CCGG 7 cut(s) 147, 163, 3117, 3194, 3490, 3500, 3569
BslFI GGGAC 8 cut(s) 554, 1198, 1341, 1579, 2639, 2676, 2883, 3090
BsmAI GTCTC 7 cut(s) 1031, 1454, 1610, 3143, 3281, 3407, 3641
BsmBI CGTCTC 1 cut(s) 3641
BsmFI GGGAC 8 cut(s) 554, 1198, 1341, 1579, 2639, 2676, 2883, 3090
BsmI GAATGC 3 cut(s) 217, 3250, 3375
BsnI GGCC 4 cut(s) 26, 2373, 2612, 3664
Bso31I GGTCTC 3 cut(s) 1610, 3281, 3407
BsoBI CYCGRG 1 cut(s) 176
Bsp119I TTCGAA 2 cut(s) 251, 1561
Bsp1286I GDGCHC 2 cut(s) 804, 1375
Bsp13I TCCGGA 1 cut(s) 3193
Bsp19I CCATGG 1 cut(s) 677
BspACI CCGC 4 cut(s) 448, 2601, 3347, 3359
BspANI GGCC 4 cut(s) 26, 2373, 2612, 3664
BspCNI CTCAG 8 cut(s) 360, 706, 845, 1235, 1456, 2594, 2613, 2898
BspEI TCCGGA 1 cut(s) 3193
BspHI TCATGA 3 cut(s) 294, 550, 2062
BspLI GGNNCC 4 cut(s) 374, 683, 3427, 3638
BspMAI CTGCAG 1 cut(s) 3561
BspMI ACCTGC 1 cut(s) 2149
BspPI GGATC 4 cut(s) 292, 350, 1091, 1199
BspT104I TTCGAA 2 cut(s) 251, 1561
BspT107I GGYRCC 2 cut(s) 3425, 3636
BspTI CTTAAG 2 cut(s) 1348, 2639
BspTNI GGTCTC 3 cut(s) 1610, 3281, 3407
BsrDI GCAATG 3 cut(s) 1051, 1576, 3169
BsrI ACTGG 8 cut(s) 338, 786, 931, 1045, 1105, 1336, 1680, 2652
BssECI CCNNGG 6 cut(s) 13, 639, 677, 849, 1597, 2815
BssNAI GTATAC 1 cut(s) 1114
BssNI GRCGYC 2 cut(s) 636, 1354
BssSI CACGAG 1 cut(s) 1401
BssT1I CCWWGG 3 cut(s) 677, 1597, 2815
Bst1107I GTATAC 1 cut(s) 1114
Bst2BI CACGAG 1 cut(s) 1401
Bst2UI CCWGG 2 cut(s) 850, 2741
Bst6I CTCTTC 7 cut(s) 271, 982, 990, 3459, 3523, 3528, 3592
BstACI GRCGYC 2 cut(s) 636, 1354
BstAFI CTTAAG 2 cut(s) 1348, 2639
BstAPI GCANNNNNTGC 2 cut(s) 389, 3565
BstBAI YACGTR 3 cut(s) 73, 1421, 2277
BstBI TTCGAA 2 cut(s) 251, 1561
BstDEI CTNAG 9 cut(s) 368, 714, 832, 1222, 1464, 2581, 2621, 2885, 2904
BstDSI CCRYGG 1 cut(s) 677
BstEII GGTNACC 1 cut(s) 2819
BstENI CCTNNNNNAGG 1 cut(s) 725
BstF5I GGATG 6 cut(s) 172, 359, 1684, 1697, 3026, 3369
BstHHI GCGC 2 cut(s) 2121, 3487
BstMAI GTCTC 7 cut(s) 1031, 1454, 1610, 3143, 3281, 3407, 3641
BstMWI GCNNNNNNNGC 6 cut(s) 389, 476, 688, 2719, 3541, 3565
BstNI CCWGG 2 cut(s) 850, 2741
BstNSI RCATGY 2 cut(s) 1499, 1663
BstPI GGTNACC 1 cut(s) 2819
BstSCI CCNGG 4 cut(s) 162, 848, 2739, 3116
BstSFI CTRYAG 1 cut(s) 3557
BstSNI TACGTA 1 cut(s) 2277
BstV1I GCAGC 3 cut(s) 464, 2610, 3308
BstV2I GAAGAC 3 cut(s) 102, 334, 1568
BstX2I RGATCY 6 cut(s) 472, 1191, 1249, 1720, 1822, 2984
BstXI CCANNNNNNTGG 1 cut(s) 1704
BstYI RGATCY 6 cut(s) 472, 1191, 1249, 1720, 1822, 2984
BstZ17I GTATAC 1 cut(s) 1114
BsuI GTATCC 1 cut(s) 3617
BsuRI GGCC 4 cut(s) 26, 2373, 2612, 3664
BtgI CCRYGG 1 cut(s) 677
BtgZI GCGATG 1 cut(s) 2099
BtsCI GGATG 6 cut(s) 172, 359, 1684, 1697, 3026, 3369
BtsI GCAGTG 3 cut(s) 129, 2517, 3566
BtsIMutI CAGTG 7 cut(s) 129, 924, 940, 1660, 1673, 2517, 3566
BveI ACCTGC 1 cut(s) 2149
CaiI CAGNNNCTG 1 cut(s) 3265
CciI TCATGA 3 cut(s) 294, 550, 2062
CfoI GCGC 2 cut(s) 2121, 3487
Cfr13I GGNCC 3 cut(s) 315, 718, 3663
CseI GACGC 2 cut(s) 644, 1343
Csp6I GTAC 5 cut(s) 794, 2004, 2227, 2278, 2328
CspCI CAANNNNNGTGG 2 cut(s) 2998, 3033
CviQI GTAC 5 cut(s) 794, 2004, 2227, 2278, 2328
DdeI CTNAG 9 cut(s) 368, 714, 832, 1222, 1464, 2581, 2621, 2885, 2904
Eam1104I CTCTTC 7 cut(s) 271, 982, 990, 3459, 3523, 3528, 3592
EarI CTCTTC 7 cut(s) 271, 982, 990, 3459, 3523, 3528, 3592
Ecl136II GAGCTC 1 cut(s) 802
Eco105I TACGTA 1 cut(s) 2277
Eco130I CCWWGG 3 cut(s) 677, 1597, 2815
Eco147I AGGCCT 3 cut(s) 26, 2373, 2612
Eco24I GRGCYC 1 cut(s) 804
Eco31I GGTCTC 3 cut(s) 1610, 3281, 3407
Eco32I GATATC 1 cut(s) 2060
Eco47I GGWCC 2 cut(s) 315, 718
Eco53kI GAGCTC 1 cut(s) 802
Eco57I CTGAAG 1 cut(s) 1839
Eco88I CYCGRG 1 cut(s) 176
Eco91I GGTNACC 1 cut(s) 2819
EcoICRI GAGCTC 1 cut(s) 802
EcoNI CCTNNNNNAGG 1 cut(s) 725
EcoO109I RGGNCCY 2 cut(s) 315, 718
EcoO65I GGTNACC 1 cut(s) 2819
EcoRI GAATTC 1 cut(s) 2936
EcoRII CCWGG 2 cut(s) 848, 2739
EcoRV GATATC 1 cut(s) 2060
EcoT14I CCWWGG 3 cut(s) 677, 1597, 2815
EcoT22I ATGCAT 1 cut(s) 1944
EcoT38I GRGCYC 1 cut(s) 804
ErhI CCWWGG 3 cut(s) 677, 1597, 2815
Esp3I CGTCTC 1 cut(s) 3641
FalI AAGNNNNNCTT 2 cut(s) 891, 923
FaqI GGGAC 8 cut(s) 554, 1198, 1341, 1579, 2639, 2676, 2883, 3090
FauI CCCGC 2 cut(s) 441, 3352
FbaI TGATCA 2 cut(s) 118, 2406
FblI GTMKAC 2 cut(s) 1113, 1549
Fnu4HI GCNGC 3 cut(s) 453, 2599, 3322
FokI GGATG 6 cut(s) 179, 346, 1684, 1691, 3033, 3376
FriOI GRGCYC 1 cut(s) 804
Fsp4HI GCNGC 3 cut(s) 453, 2599, 3322
FspI TGCGCA 1 cut(s) 2120
GlaI GCGC 2 cut(s) 2120, 3486
GluI GCNGC 3 cut(s) 453, 2599, 3322
GsaI CCCAGC 2 cut(s) 2526, 3375
GsuI CTGGAG 5 cut(s) 302, 832, 1389, 1998, 2468
HaeIII GGCC 4 cut(s) 26, 2373, 2612, 3664
HapII CCGG 7 cut(s) 147, 163, 3117, 3194, 3490, 3500, 3569
HgaI GACGC 2 cut(s) 644, 1343
HhaI GCGC 2 cut(s) 2121, 3487
Hin1I GRCGYC 2 cut(s) 636, 1354
Hin6I GCGC 2 cut(s) 2119, 3485
HinP1I GCGC 2 cut(s) 2119, 3485
HincII GTYRAC 3 cut(s) 142, 619, 2313
HindII GTYRAC 3 cut(s) 142, 619, 2313
HindIII AAGCTT 4 cut(s) 689, 1227, 1966, 2549
HpaI GTTAAC 2 cut(s) 619, 2313
HpaII CCGG 7 cut(s) 147, 163, 3117, 3194, 3490, 3500, 3569
Hpy166II GTNNAC 9 cut(s) 142, 619, 1114, 1550, 1760, 2313, 3509, 3578, 3676
Hpy8I GTNNAC 9 cut(s) 142, 619, 1114, 1550, 1760, 2313, 3509, 3578, 3676
Hpy99I CGWCG 3 cut(s) 353, 430, 3329
HpyAV CCTTC 6 cut(s) 583, 1807, 2661, 2686, 2889, 3053
HpyCH4IV ACGT 5 cut(s) 72, 351, 1420, 1947, 2276
HpyF10VI GCNNNNNNNGC 6 cut(s) 389, 476, 688, 2719, 3541, 3565
HpyF3I CTNAG 9 cut(s) 368, 714, 832, 1222, 1464, 2581, 2621, 2885, 2904
HpySE526I ACGT 5 cut(s) 72, 351, 1420, 1947, 2276
Hsp92I GRCGYC 2 cut(s) 636, 1354
HspAI GCGC 2 cut(s) 2119, 3485
Kpn2I TCCGGA 1 cut(s) 3193
Ksp22I TGATCA 2 cut(s) 118, 2406
KspAI GTTAAC 2 cut(s) 619, 2313
LmnI GCTCC 6 cut(s) 286, 687, 1370, 2727, 3352, 3492
Lsp1109I GCAGC 3 cut(s) 464, 2610, 3308
LweI GCATC 2 cut(s) 2442, 2478
MaeII ACGT 5 cut(s) 72, 351, 1420, 1947, 2276
MflI RGATCY 6 cut(s) 472, 1191, 1249, 1720, 1822, 2984
MhlI GDGCHC 2 cut(s) 804, 1375
MlyI GAGTC 8 cut(s) 168, 233, 524, 824, 1220, 1373, 2026, 2290
MmeI TCCRAC 4 cut(s) 520, 1320, 1843, 2749
Mph1103I ATGCAT 1 cut(s) 1944
MroI TCCGGA 1 cut(s) 3193
MroXI GAANNNNTTC 2 cut(s) 1292, 3189
MslI CAYNNNNRTG 4 cut(s) 1159, 1206, 1457, 1702
MspA1I CMGCKG 1 cut(s) 2601
MspCI CTTAAG 2 cut(s) 1348, 2639
MspI CCGG 7 cut(s) 147, 163, 3117, 3194, 3490, 3500, 3569
MspR9I CCNGG 4 cut(s) 164, 850, 2741, 3118
Mva1269I GAATGC 3 cut(s) 217, 3250, 3375
MvaI CCWGG 2 cut(s) 850, 2741
MwoI GCNNNNNNNGC 6 cut(s) 389, 476, 688, 2719, 3541, 3565
NciI CCSGG 2 cut(s) 164, 3118
NcoI CCATGG 1 cut(s) 677
NlaIV GGNNCC 4 cut(s) 374, 683, 3427, 3638
NmeAIII GCCGAG 1 cut(s) 664
NmuCI GTSAC 8 cut(s) 17, 225, 1393, 1655, 1685, 2036, 2948, 3047
NsbI TGCGCA 1 cut(s) 2120
NsiI ATGCAT 1 cut(s) 1944
NspI RCATGY 2 cut(s) 1499, 1663
NspV TTCGAA 2 cut(s) 251, 1561
PaeR7I CTCGAG 1 cut(s) 176
PagI TCATGA 3 cut(s) 294, 550, 2062
PceI AGGCCT 3 cut(s) 26, 2373, 2612
PciI ACATGT 1 cut(s) 1659
PcsI WCGNNNNNNNCGW 1 cut(s) 226
PctI GAATGC 3 cut(s) 217, 3250, 3375
PdmI GAANNNNTTC 2 cut(s) 1292, 3189
PfeI GAWTC 8 cut(s) 547, 911, 1008, 1060, 2009, 2249, 3204, 3262
PfoI TCCNGGA 1 cut(s) 162
PkrI GCNGC 3 cut(s) 454, 2600, 3323
PleI GAGTC 8 cut(s) 168, 232, 523, 824, 1219, 1372, 2026, 2290
PpsI GAGTC 8 cut(s) 168, 232, 523, 824, 1219, 1372, 2026, 2290
Ppu21I YACGTR 3 cut(s) 73, 1421, 2277
PpuMI RGGWCCY 2 cut(s) 315, 718
PscI ACATGT 1 cut(s) 1659
PsiI TTATAA 1 cut(s) 1332
Psp124BI GAGCTC 1 cut(s) 804
Psp5II RGGWCCY 2 cut(s) 315, 718
Psp6I CCWGG 2 cut(s) 848, 2739
PspEI GGTNACC 1 cut(s) 2819
PspFI CCCAGC 2 cut(s) 2522, 3371
PspGI CCWGG 2 cut(s) 848, 2739
PspN4I GGNNCC 4 cut(s) 374, 683, 3427, 3638
PspPI GGNCC 3 cut(s) 315, 718, 3663
PspPPI RGGWCCY 2 cut(s) 315, 718
PsrI GAACNNNNNNTAC 2 cut(s) 846, 878
PstI CTGCAG 1 cut(s) 3561
PstNI CAGNNNCTG 1 cut(s) 3265
PsuI RGATCY 6 cut(s) 472, 1191, 1249, 1720, 1822, 2984
RsaI GTAC 5 cut(s) 795, 2005, 2228, 2279, 2329
RsaNI GTAC 5 cut(s) 794, 2004, 2227, 2278, 2328
RseI CAYNNNNRTG 4 cut(s) 1159, 1206, 1457, 1702
SacI GAGCTC 1 cut(s) 804
SatI GCNGC 3 cut(s) 453, 2599, 3322
Sau96I GGNCC 3 cut(s) 315, 718, 3663
SchI GAGTC 8 cut(s) 168, 233, 524, 824, 1220, 1373, 2026, 2290
ScrFI CCNGG 4 cut(s) 164, 850, 2741, 3118
SduI GDGCHC 2 cut(s) 804, 1375
SfaNI GCATC 2 cut(s) 2442, 2478
SfcI CTRYAG 1 cut(s) 3557
Sfr274I CTCGAG 1 cut(s) 176
SfuI TTCGAA 2 cut(s) 251, 1561
SinI GGWCC 2 cut(s) 315, 718
SlaI CTCGAG 1 cut(s) 176
SmiMI CAYNNNNRTG 4 cut(s) 1159, 1206, 1457, 1702
SnaBI TACGTA 1 cut(s) 2277
SseBI AGGCCT 3 cut(s) 26, 2373, 2612
SsiI CCGC 4 cut(s) 448, 2601, 3347, 3359
SspI AATATT 2 cut(s) 2233, 2798
SstI GAGCTC 1 cut(s) 804
StuI AGGCCT 3 cut(s) 26, 2373, 2612
StyD4I CCNGG 4 cut(s) 162, 848, 2739, 3116
StyI CCWWGG 3 cut(s) 677, 1597, 2815
TaiI ACGT 5 cut(s) 75, 354, 1423, 1950, 2279
TaqI TCGA 8 cut(s) 177, 220, 251, 428, 1561, 2368, 3006, 3697
TatI WGTACW 1 cut(s) 2327
TfiI GAWTC 8 cut(s) 547, 911, 1008, 1060, 2009, 2249, 3204, 3262
TscAI CASTG 7 cut(s) 136, 931, 940, 1660, 1680, 2524, 3566
TseFI GTSAC 8 cut(s) 17, 225, 1393, 1655, 1685, 2036, 2948, 3047
TseI GCWGC 3 cut(s) 452, 2598, 3321
Tsp45I GTSAC 8 cut(s) 17, 225, 1393, 1655, 1685, 2036, 2948, 3047
TspGWI ACGGA 1 cut(s) 186
TspRI CASTG 7 cut(s) 136, 931, 940, 1660, 1680, 2524, 3566
Vha464I CTTAAG 2 cut(s) 1348, 2639
VpaK11BI GGWCC 2 cut(s) 315, 718
XagI CCTNNNNNAGG 1 cut(s) 725
XapI RAATTY 7 cut(s) 487, 656, 1175, 1781, 1982, 2936, 3002
XbaI TCTAGA 2 cut(s) 1717, 2054
XceI RCATGY 2 cut(s) 1499, 1663
XcmI CCANNNNNNNNNTGG 2 cut(s) 277, 536
XhoI CTCGAG 1 cut(s) 176
XmiI GTMKAC 2 cut(s) 1113, 1549
XmnI GAANNNNTTC 2 cut(s) 1292, 3189
Zsp2I ATGCAT 1 cut(s) 1944
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.