Belongs to the disease resistance NB-LRR family
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Rx_N | PF18052 | 10 - 104 | 9.3e-19 | Rx N-terminal domain |
| NB-ARC | PF00931 | 179 - 351 | 2.1e-40 | NB-ARC domain |
| WHD_DRP | PF23559 | 435 - 505 | 1.7e-24 | Disease resistance protein Winged helix domain |
| LRR_14 | PF23598 | 579 - 882 | 1.2e-25 | Leucine-rich repeat region |
| LRR_R13L1-DRL21 | PF25019 | 699 - 822 | 3.7e-39 | R13L1/DRL21 LRRs |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 2 cut(s) | 1670, 2742 |
| Acc36I | ACCTGC | 1 cut(s) | 3142 |
| Acc65I | GGTACC | 1 cut(s) | 3330 |
| AccB1I | GGYRCC | 1 cut(s) | 3330 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2926 |
| AccI | GTMKAC | 1 cut(s) | 657 |
| AccII | CGCG | 2 cut(s) | 698, 2127 |
| AccIII | TCCGGA | 1 cut(s) | 2944 |
| AciI | CCGC | 5 cut(s) | 2021, 2127, 2563, 2641, 3031 |
| AclI | AACGTT | 1 cut(s) | 1282 |
| AclWI | GGATC | 2 cut(s) | 1061, 3422 |
| AcoI | YGGCCR | 1 cut(s) | 1356 |
| AcsI | RAATTY | 6 cut(s) | 335, 422, 719, 1637, 2549, 2800 |
| AcuI | CTGAAG | 1 cut(s) | 267 |
| AfaI | GTAC | 7 cut(s) | 1607, 1790, 1891, 1999, 2332, 2355, 3332 |
| AflII | CTTAAG | 1 cut(s) | 892 |
| AflIII | ACRYGT | 5 cut(s) | 696, 1039, 1848, 2753, 2781 |
| AhlI | ACTAGT | 1 cut(s) | 2218 |
| AjnI | CCWGG | 1 cut(s) | 919 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2754, 2786 |
| Alw26I | GTCTC | 7 cut(s) | 409, 542, 1151, 1217, 2173, 2485, 3066 |
| AlwI | GGATC | 2 cut(s) | 1061, 3422 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 920 |
| Aor13HI | TCCGGA | 1 cut(s) | 2944 |
| AoxI | GGCC | 4 cut(s) | 1114, 1356, 3124, 3356 |
| ApeKI | GCWGC | 5 cut(s) | 914, 1127, 1747, 2078, 2827 |
| ApoI | RAATTY | 6 cut(s) | 335, 422, 719, 1637, 2549, 2800 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1508, 1540 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 836, 839 |
| Asp718I | GGTACC | 1 cut(s) | 3330 |
| AspLEI | GCGC | 6 cut(s) | 288, 1671, 1980, 2127, 2743, 2836 |
| AspS9I | GGNCC | 4 cut(s) | 2489, 2880, 3124, 3357 |
| AsuC2I | CCSGG | 1 cut(s) | 2342 |
| AsuHPI | GGTGA | 6 cut(s) | 424, 1463, 1477, 1594, 1634, 3202 |
| AsuII | TTCGAA | 1 cut(s) | 2553 |
| AvaII | GGWCC | 2 cut(s) | 2489, 2880 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 3314, 3347 |
| BanI | GGYRCC | 1 cut(s) | 3330 |
| BauI | CACGAG | 1 cut(s) | 3056 |
| BbsI | GAAGAC | 4 cut(s) | 255, 519, 641, 1036 |
| BbvI | GCAGC | 5 cut(s) | 926, 1114, 1734, 2065, 2814 |
| BccI | CCATC | 6 cut(s) | 1348, 1619, 1989, 2986, 3164, 3386 |
| BciT130I | CCWGG | 1 cut(s) | 921 |
| BclI | TGATCA | 1 cut(s) | 1468 |
| BcnI | CCSGG | 1 cut(s) | 2342 |
| BcoDI | GTCTC | 7 cut(s) | 409, 542, 1151, 1217, 2173, 2485, 3066 |
| BcuI | ACTAGT | 1 cut(s) | 2218 |
| BfaI | CTAG | 5 cut(s) | 419, 2219, 2426, 3077, 3296 |
| BfmI | CTRYAG | 5 cut(s) | 912, 1392, 2079, 2114, 3251 |
| BfrI | CTTAAG | 1 cut(s) | 892 |
| BfuAI | ACCTGC | 1 cut(s) | 3142 |
| BglII | AGATCT | 3 cut(s) | 1363, 2041, 3300 |
| BisI | GCNGC | 5 cut(s) | 915, 1128, 1748, 2079, 2828 |
| BlpI | GCTNAGC | 2 cut(s) | 648, 1659 |
| BlsI | GCNGC | 5 cut(s) | 916, 1129, 1749, 2080, 2829 |
| Bme1390I | CCNGG | 2 cut(s) | 921, 2342 |
| Bme18I | GGWCC | 2 cut(s) | 2489, 2880 |
| BmgT120I | GGNCC | 4 cut(s) | 2489, 2880, 3124, 3357 |
| BmiI | GGNNCC | 1 cut(s) | 3332 |
| BmrFI | CCNGG | 2 cut(s) | 921, 2342 |
| BmrI | ACTGGG | 1 cut(s) | 2811 |
| BmsI | GCATC | 9 cut(s) | 160, 232, 688, 877, 971, 1645, 2004, 2886, 3230 |
| BmuI | ACTGGG | 1 cut(s) | 2811 |
| BoxI | GACNNNNGTC | 2 cut(s) | 519, 3058 |
| BpiI | GAAGAC | 4 cut(s) | 255, 519, 641, 1036 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 15, 47, 1576, 1608 |
| BpmI | CTGGAG | 3 cut(s) | 1548, 1568, 2903 |
| Bpu10I | CCTNAGC | 1 cut(s) | 3246 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 648, 1659 |
| Bpu14I | TTCGAA | 1 cut(s) | 2553 |
| BpuEI | CTTGAG | 3 cut(s) | 65, 797, 1417 |
| BpuMI | CCSGG | 1 cut(s) | 2342 |
| BsaBI | GATNNNNATC | 3 cut(s) | 1071, 2855, 2977 |
| BsaI | GGTCTC | 1 cut(s) | 2485 |
| BsaJI | CCNNGG | 2 cut(s) | 94, 359 |
| BsaWI | WCCGGW | 3 cut(s) | 2862, 2887, 2944 |
| Bse1I | ACTGG | 4 cut(s) | 1883, 2817, 2920, 3359 |
| Bse3DI | GCAATG | 4 cut(s) | 955, 1569, 1766, 3021 |
| Bse8I | GATNNNNATC | 3 cut(s) | 1071, 2855, 2977 |
| BseAI | TCCGGA | 1 cut(s) | 2944 |
| BseBI | CCWGG | 1 cut(s) | 921 |
| BseDI | CCNNGG | 2 cut(s) | 94, 359 |
| BseGI | GGATG | 5 cut(s) | 90, 448, 541, 892, 1359 |
| BseJI | GATNNNNATC | 3 cut(s) | 1071, 2855, 2977 |
| BseMI | GCAATG | 4 cut(s) | 955, 1569, 1766, 3021 |
| BseMII | CTCAG | 9 cut(s) | 86, 102, 662, 999, 1314, 2435, 2484, 2867, 3237 |
| BseNI | ACTGG | 4 cut(s) | 1883, 2817, 2920, 3359 |
| BseRI | GAGGAG | 5 cut(s) | 191, 1025, 1418, 2622, 3134 |
| BseXI | GCAGC | 5 cut(s) | 926, 1114, 1734, 2065, 2814 |
| BsgI | GTGCAG | 1 cut(s) | 1692 |
| Bsh1236I | CGCG | 2 cut(s) | 698, 2127 |
| BshFI | GGCC | 4 cut(s) | 1116, 1358, 3126, 3358 |
| BshNI | GGYRCC | 1 cut(s) | 3330 |
| BsiSI | CCGG | 4 cut(s) | 2342, 2863, 2888, 2945 |
| BslFI | GGGAC | 2 cut(s) | 1475, 2210 |
| BsmAI | GTCTC | 7 cut(s) | 409, 542, 1151, 1217, 2173, 2485, 3066 |
| BsmBI | CGTCTC | 1 cut(s) | 542 |
| BsmFI | GGGAC | 2 cut(s) | 1475, 2210 |
| BsnI | GGCC | 4 cut(s) | 1116, 1358, 3126, 3358 |
| Bso31I | GGTCTC | 1 cut(s) | 2485 |
| Bsp119I | TTCGAA | 1 cut(s) | 2553 |
| Bsp13I | TCCGGA | 1 cut(s) | 2944 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 648, 1659 |
| BspACI | CCGC | 5 cut(s) | 2021, 2127, 2563, 2641, 3031 |
| BspANI | GGCC | 4 cut(s) | 1116, 1358, 3126, 3358 |
| BspCNI | CTCAG | 9 cut(s) | 85, 103, 661, 1000, 1313, 2436, 2485, 2868, 3238 |
| BspEI | TCCGGA | 1 cut(s) | 2944 |
| BspFNI | CGCG | 2 cut(s) | 698, 2127 |
| BspHI | TCATGA | 4 cut(s) | 850, 2089, 2310, 2626 |
| BspLI | GGNNCC | 1 cut(s) | 3332 |
| BspMAI | CTGCAG | 3 cut(s) | 916, 1396, 2083 |
| BspMI | ACCTGC | 1 cut(s) | 3142 |
| BspPI | GGATC | 2 cut(s) | 1061, 3422 |
| BspT104I | TTCGAA | 1 cut(s) | 2553 |
| BspT107I | GGYRCC | 1 cut(s) | 3330 |
| BspTI | CTTAAG | 1 cut(s) | 892 |
| BspTNI | GGTCTC | 1 cut(s) | 2485 |
| BsrDI | GCAATG | 4 cut(s) | 955, 1569, 1766, 3021 |
| BsrI | ACTGG | 4 cut(s) | 1883, 2817, 2920, 3359 |
| BssECI | CCNNGG | 2 cut(s) | 94, 359 |
| BssNAI | GTATAC | 1 cut(s) | 658 |
| BssSI | CACGAG | 1 cut(s) | 3056 |
| BssT1I | CCWWGG | 2 cut(s) | 94, 359 |
| Bst1107I | GTATAC | 1 cut(s) | 658 |
| Bst2BI | CACGAG | 1 cut(s) | 3056 |
| Bst2UI | CCWGG | 1 cut(s) | 921 |
| Bst4CI | ACNGT | 9 cut(s) | 668, 878, 1556, 1713, 1833, 2408, 3255, 3311, 3330 |
| Bst6I | CTCTTC | 4 cut(s) | 2388, 2886, 3222, 3297 |
| BstAFI | CTTAAG | 1 cut(s) | 892 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 959 |
| BstBI | TTCGAA | 1 cut(s) | 2553 |
| BstC8I | GCNNGC | 7 cut(s) | 1118, 1239, 1576, 2832, 3035, 3128, 3260 |
| BstF5I | GGATG | 5 cut(s) | 90, 448, 541, 892, 1359 |
| BstFNI | CGCG | 2 cut(s) | 698, 2127 |
| BstHHI | GCGC | 6 cut(s) | 288, 1671, 1980, 2127, 2743, 2836 |
| BstMAI | GTCTC | 7 cut(s) | 409, 542, 1151, 1217, 2173, 2485, 3066 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 220, 959, 1584, 1744, 1756, 2569, 2638, 2833, 3043 |
| BstNI | CCWGG | 1 cut(s) | 921 |
| BstNSI | RCATGY | 6 cut(s) | 1043, 1852, 2757, 2785, 2834, 3037 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 519, 3058 |
| BstSCI | CCNGG | 2 cut(s) | 919, 2340 |
| BstSFI | CTRYAG | 5 cut(s) | 912, 1392, 2079, 2114, 3251 |
| BstUI | CGCG | 2 cut(s) | 698, 2127 |
| BstV1I | GCAGC | 5 cut(s) | 926, 1114, 1734, 2065, 2814 |
| BstV2I | GAAGAC | 4 cut(s) | 255, 519, 641, 1036 |
| BstX2I | RGATCY | 5 cut(s) | 1066, 1363, 2041, 3300, 3414 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1245 |
| BstYI | RGATCY | 5 cut(s) | 1066, 1363, 2041, 3300, 3414 |
| BstZ17I | GTATAC | 1 cut(s) | 658 |
| BsuRI | GGCC | 4 cut(s) | 1116, 1358, 3126, 3358 |
| BtsCI | GGATG | 5 cut(s) | 90, 448, 541, 892, 1359 |
| BtsI | GCAGTG | 2 cut(s) | 390, 3044 |
| BtsIMutI | CAGTG | 6 cut(s) | 108, 390, 1561, 2824, 3044, 3260 |
| BveI | ACCTGC | 1 cut(s) | 3142 |
| Cac8I | GCNNGC | 7 cut(s) | 1118, 1239, 1576, 2832, 3035, 3128, 3260 |
| CaiI | CAGNNNCTG | 1 cut(s) | 920 |
| CciI | TCATGA | 4 cut(s) | 850, 2089, 2310, 2626 |
| CfoI | GCGC | 6 cut(s) | 288, 1671, 1980, 2127, 2743, 2836 |
| Cfr13I | GGNCC | 4 cut(s) | 2489, 2880, 3124, 3357 |
| CseI | GACGC | 1 cut(s) | 480 |
| Csp6I | GTAC | 7 cut(s) | 1606, 1789, 1890, 1998, 2331, 2354, 3331 |
| CviQI | GTAC | 7 cut(s) | 1606, 1789, 1890, 1998, 2331, 2354, 3331 |
| EaeI | YGGCCR | 1 cut(s) | 1356 |
| Eam1104I | CTCTTC | 4 cut(s) | 2388, 2886, 3222, 3297 |
| EarI | CTCTTC | 4 cut(s) | 2388, 2886, 3222, 3297 |
| Eco130I | CCWWGG | 2 cut(s) | 94, 359 |
| Eco147I | AGGCCT | 1 cut(s) | 1116 |
| Eco31I | GGTCTC | 1 cut(s) | 2485 |
| Eco32I | GATATC | 2 cut(s) | 781, 1990 |
| Eco47I | GGWCC | 2 cut(s) | 2489, 2880 |
| Eco57I | CTGAAG | 1 cut(s) | 267 |
| EcoO109I | RGGNCCY | 3 cut(s) | 2489, 2880, 3124 |
| EcoRI | GAATTC | 1 cut(s) | 422 |
| EcoRII | CCWGG | 1 cut(s) | 919 |
| EcoRV | GATATC | 2 cut(s) | 781, 1990 |
| EcoT14I | CCWWGG | 2 cut(s) | 94, 359 |
| EcoT22I | ATGCAT | 1 cut(s) | 1494 |
| ErhI | CCWWGG | 2 cut(s) | 94, 359 |
| Esp3I | CGTCTC | 1 cut(s) | 542 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 335, 367, 824, 856, 827, 859 |
| FaqI | GGGAC | 2 cut(s) | 1475, 2210 |
| FauI | CCCGC | 1 cut(s) | 2556 |
| FauNDI | CATATG | 2 cut(s) | 1202, 1618 |
| FbaI | TGATCA | 1 cut(s) | 1468 |
| FblI | GTMKAC | 1 cut(s) | 657 |
| Fnu4HI | GCNGC | 5 cut(s) | 915, 1128, 1748, 2079, 2828 |
| FokI | GGATG | 5 cut(s) | 77, 455, 548, 899, 1366 |
| Fsp4HI | GCNGC | 5 cut(s) | 915, 1128, 1748, 2079, 2828 |
| FspBI | CTAG | 5 cut(s) | 419, 2219, 2426, 3077, 3296 |
| FspI | TGCGCA | 2 cut(s) | 1670, 2742 |
| GlaI | GCGC | 6 cut(s) | 287, 1670, 1979, 2126, 2742, 2835 |
| GluI | GCNGC | 5 cut(s) | 915, 1128, 1748, 2079, 2828 |
| GsuI | CTGGAG | 3 cut(s) | 1548, 1568, 2903 |
| HaeIII | GGCC | 4 cut(s) | 1116, 1358, 3126, 3358 |
| HapII | CCGG | 4 cut(s) | 2342, 2863, 2888, 2945 |
| HgaI | GACGC | 1 cut(s) | 480 |
| HhaI | GCGC | 6 cut(s) | 288, 1671, 1980, 2127, 2743, 2836 |
| Hin6I | GCGC | 6 cut(s) | 286, 1669, 1978, 2125, 2741, 2834 |
| HinP1I | GCGC | 6 cut(s) | 286, 1669, 1978, 2125, 2741, 2834 |
| HincII | GTYRAC | 1 cut(s) | 3082 |
| HindII | GTYRAC | 1 cut(s) | 3082 |
| HindIII | AAGCTT | 3 cut(s) | 369, 2690, 3223 |
| HpaII | CCGG | 4 cut(s) | 2342, 2863, 2888, 2945 |
| HphI | GGTGA | 6 cut(s) | 424, 1463, 1477, 1594, 1634, 3202 |
| Hpy166II | GTNNAC | 3 cut(s) | 388, 658, 3082 |
| Hpy8I | GTNNAC | 3 cut(s) | 388, 658, 3082 |
| HpyAV | CCTTC | 7 cut(s) | 340, 504, 2597, 2915, 2960, 3182, 3263 |
| HpyCH4III | ACNGT | 9 cut(s) | 668, 878, 1556, 1713, 1833, 2408, 3255, 3311, 3330 |
| HpyCH4IV | ACGT | 3 cut(s) | 1282, 1892, 3000 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 220, 959, 1584, 1744, 1756, 2569, 2638, 2833, 3043 |
| HpySE526I | ACGT | 3 cut(s) | 1282, 1892, 3000 |
| HspAI | GCGC | 6 cut(s) | 286, 1669, 1978, 2125, 2741, 2834 |
| Kpn2I | TCCGGA | 1 cut(s) | 2944 |
| KpnI | GGTACC | 1 cut(s) | 3334 |
| Ksp22I | TGATCA | 1 cut(s) | 1468 |
| LmnI | GCTCC | 5 cut(s) | 23, 1160, 2110, 2531, 2609 |
| Lsp1109I | GCAGC | 5 cut(s) | 926, 1114, 1734, 2065, 2814 |
| LweI | GCATC | 9 cut(s) | 160, 232, 688, 877, 971, 1645, 2004, 2886, 3230 |
| MaeI | CTAG | 5 cut(s) | 419, 2219, 2426, 3077, 3296 |
| MaeII | ACGT | 3 cut(s) | 1282, 1892, 3000 |
| MaeIII | GTNAC | 7 cut(s) | 756, 937, 1556, 2057, 2408, 2594, 3377 |
| MflI | RGATCY | 5 cut(s) | 1066, 1363, 2041, 3300, 3414 |
| MluI | ACGCGT | 1 cut(s) | 696 |
| MlyI | GAGTC | 7 cut(s) | 383, 804, 917, 1553, 2963, 3014, 3048 |
| MmeI | TCCRAC | 5 cut(s) | 1384, 1749, 2308, 2569, 2693 |
| Mph1103I | ATGCAT | 1 cut(s) | 1494 |
| MroI | TCCGGA | 1 cut(s) | 2944 |
| MroXI | GAANNNNTTC | 2 cut(s) | 836, 839 |
| MslI | CAYNNNNRTG | 2 cut(s) | 410, 855 |
| MspCI | CTTAAG | 1 cut(s) | 892 |
| MspI | CCGG | 4 cut(s) | 2342, 2863, 2888, 2945 |
| MspR9I | CCNGG | 2 cut(s) | 921, 2342 |
| MvaI | CCWGG | 1 cut(s) | 921 |
| MvnI | CGCG | 2 cut(s) | 698, 2127 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 220, 959, 1584, 1744, 1756, 2569, 2638, 2833, 3043 |
| NciI | CCSGG | 1 cut(s) | 2342 |
| NdeI | CATATG | 2 cut(s) | 1202, 1618 |
| NlaIV | GGNNCC | 1 cut(s) | 3332 |
| NmeAIII | GCCGAG | 1 cut(s) | 1573 |
| NmuCI | GTSAC | 4 cut(s) | 756, 937, 1556, 3377 |
| NsbI | TGCGCA | 2 cut(s) | 1670, 2742 |
| NsiI | ATGCAT | 1 cut(s) | 1494 |
| NspI | RCATGY | 6 cut(s) | 1043, 1852, 2757, 2785, 2834, 3037 |
| NspV | TTCGAA | 1 cut(s) | 2553 |
| PacI | TTAATTAA | 1 cut(s) | 1971 |
| PaeI | GCATGC | 2 cut(s) | 2834, 3037 |
| PagI | TCATGA | 4 cut(s) | 850, 2089, 2310, 2626 |
| PceI | AGGCCT | 1 cut(s) | 1116 |
| PciI | ACATGT | 4 cut(s) | 1039, 1848, 2753, 2781 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 3063 |
| PdmI | GAANNNNTTC | 2 cut(s) | 836, 839 |
| PfeI | GAWTC | 7 cut(s) | 578, 604, 1160, 1696, 2212, 2249, 2337 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2926 |
| PfoI | TCCNGGA | 1 cut(s) | 2340 |
| PkrI | GCNGC | 5 cut(s) | 916, 1129, 1749, 2080, 2829 |
| PleI | GAGTC | 7 cut(s) | 383, 804, 916, 1553, 2962, 3013, 3048 |
| PpsI | GAGTC | 7 cut(s) | 383, 804, 916, 1553, 2962, 3013, 3048 |
| PpuMI | RGGWCCY | 2 cut(s) | 2489, 2880 |
| PscI | ACATGT | 4 cut(s) | 1039, 1848, 2753, 2781 |
| PshAI | GACNNNNGTC | 2 cut(s) | 519, 3058 |
| Psp1406I | AACGTT | 1 cut(s) | 1282 |
| Psp5II | RGGWCCY | 2 cut(s) | 2489, 2880 |
| Psp6I | CCWGG | 1 cut(s) | 919 |
| PspGI | CCWGG | 1 cut(s) | 919 |
| PspN4I | GGNNCC | 1 cut(s) | 3332 |
| PspPI | GGNCC | 4 cut(s) | 2489, 2880, 3124, 3357 |
| PspPPI | RGGWCCY | 2 cut(s) | 2489, 2880 |
| PsrI | GAACNNNNNNTAC | 4 cut(s) | 144, 176, 857, 889 |
| PstI | CTGCAG | 3 cut(s) | 916, 1396, 2083 |
| PstNI | CAGNNNCTG | 1 cut(s) | 920 |
| PsuI | RGATCY | 5 cut(s) | 1066, 1363, 2041, 3300, 3414 |
| RsaI | GTAC | 7 cut(s) | 1607, 1790, 1891, 1999, 2332, 2355, 3332 |
| RsaNI | GTAC | 7 cut(s) | 1606, 1789, 1890, 1998, 2331, 2354, 3331 |
| RseI | CAYNNNNRTG | 2 cut(s) | 410, 855 |
| SatI | GCNGC | 5 cut(s) | 915, 1128, 1748, 2079, 2828 |
| Sau96I | GGNCC | 4 cut(s) | 2489, 2880, 3124, 3357 |
| SchI | GAGTC | 7 cut(s) | 383, 804, 917, 1553, 2963, 3014, 3048 |
| ScrFI | CCNGG | 2 cut(s) | 921, 2342 |
| SfaNI | GCATC | 9 cut(s) | 160, 232, 688, 877, 971, 1645, 2004, 2886, 3230 |
| SfcI | CTRYAG | 5 cut(s) | 912, 1392, 2079, 2114, 3251 |
| SfuI | TTCGAA | 1 cut(s) | 2553 |
| SinI | GGWCC | 2 cut(s) | 2489, 2880 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 410, 855 |
| SmlI | CTYRAG | 4 cut(s) | 44, 812, 892, 1432 |
| SmoI | CTYRAG | 4 cut(s) | 44, 812, 892, 1432 |
| SpeI | ACTAGT | 1 cut(s) | 2218 |
| SphI | GCATGC | 2 cut(s) | 2834, 3037 |
| SseBI | AGGCCT | 1 cut(s) | 1116 |
| SsiI | CCGC | 5 cut(s) | 2021, 2127, 2563, 2641, 3031 |
| SspI | AATATT | 2 cut(s) | 1168, 2158 |
| SspMI | CTAG | 5 cut(s) | 419, 2219, 2426, 3077, 3296 |
| StuI | AGGCCT | 1 cut(s) | 1116 |
| StyD4I | CCNGG | 2 cut(s) | 919, 2340 |
| StyI | CCWWGG | 2 cut(s) | 94, 359 |
| TaaI | ACNGT | 9 cut(s) | 668, 878, 1556, 1713, 1833, 2408, 3255, 3311, 3330 |
| TaiI | ACGT | 3 cut(s) | 1285, 1895, 3003 |
| TaqI | TCGA | 9 cut(s) | 165, 581, 1270, 1419, 1930, 2263, 2553, 2775, 3066 |
| TatI | WGTACW | 1 cut(s) | 2353 |
| TfiI | GAWTC | 7 cut(s) | 578, 604, 1160, 1696, 2212, 2249, 2337 |
| TscAI | CASTG | 6 cut(s) | 115, 390, 1561, 2824, 3044, 3260 |
| TseFI | GTSAC | 4 cut(s) | 756, 937, 1556, 3377 |
| TseI | GCWGC | 5 cut(s) | 914, 1127, 1747, 2078, 2827 |
| Tsp45I | GTSAC | 4 cut(s) | 756, 937, 1556, 3377 |
| TspDTI | ATGAA | 7 cut(s) | 79, 839, 1400, 1625, 2141, 2615, 3099 |
| TspGWI | ACGGA | 1 cut(s) | 2258 |
| TspRI | CASTG | 6 cut(s) | 115, 390, 1561, 2824, 3044, 3260 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2926 |
| Vha464I | CTTAAG | 1 cut(s) | 892 |
| VpaK11BI | GGWCC | 2 cut(s) | 2489, 2880 |
| XapI | RAATTY | 6 cut(s) | 335, 422, 719, 1637, 2549, 2800 |
| XbaI | TCTAGA | 1 cut(s) | 3295 |
| XceI | RCATGY | 6 cut(s) | 1043, 1852, 2757, 2785, 2834, 3037 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 616 |
| XmiI | GTMKAC | 1 cut(s) | 657 |
| XmnI | GAANNNNTTC | 2 cut(s) | 836, 839 |
| XspI | CTAG | 5 cut(s) | 419, 2219, 2426, 3077, 3296 |
| Zsp2I | ATGCAT | 1 cut(s) | 1494 |