Rroxscaffold_1G00035290

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
51392333 .. 51398587
6255 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00035290.1

Sequence Viewer

Length: 3243 bp
ATGACTCTGGAAGTTGTGGGTGGAGCTTTTCTCTCTTCTGCTCTTGCTGTTCTGTTTAATAGGATGGCTTCCCGTCCGGTTCTTGACTTCATTCGAGGAAAGAAGACCACCGCTGAGCTGCTCCATAAGTTGAAGATGAAGTTGTTATCGGTTAATAAGTTGCTCGATGATGCAGAGGAGAAGCAACTCAGAAACTCTGGAGTCAGGGAATGGCTTAATGACCTTAAAGATGTTCTCTATCGTGCCGATGACCTGTTGGATGAAATCAAGACTGAAGTTCTGCGGTGCAAGATGGAACAAGAAGATTCTGGAAGCAGCAGCACAAATCAGGTACTGAACTCTAGTTCCATTTCCATTCATCAACTTGACAAAAGGATACAGGAGATTCTTGACGAATTAGAACCTATTGCCAACGCAAAAAATGTGCTTGATTTGAAAGAGGGTGTTAAGGATAGACAACGAGCAAGACTGCCTACAACTTCTTTGGTAGTAGAGTCTAGTGTATATGGAAGGGATGAAGAAAAGGAGGCCATTATCAAGTTATTGTTAGCGGATGGTATAACTGGAAATAAGACAGAAGTGCTTCCAATTGTGGGCATGGGTGGGCTTGGAAAGACCACTCTTGCTCAACTCGTATACAACGACGACAGAGTCAAGCAACATTTTGACCATCAGTCGTGGTTTTGTGTTTCTGAAGGATTTGATATTACCAAAATAACACAGTATATTTACGGGTCACTGACTTCAGAAGTTTGTAATATCATAGACCTAGACATTCTTCAAGTTAAACTAAAGACGGCTTTGTCAGGGAGGAAATTTCTCTTTGTTTTCGACGATGTTTGGACTGTGAAGGAAGGGGAGTGGGAACTCTTGAGCCAACCCTTTGAGAGTGGAGGTCATGGAAGTAAGATCATTGTGACAACACGTGATAAAGGTGTCGCAGCCGGGATGGATAAAGGTGTCGCAGACTGGATGGGTACCCTTGAAAGTCAACATCTAATGCCACTATCTGAGGAAAACTGCTGGTTGCTGTTCTCAAAACATGCCTTCAAGAATGCAGGTGTTACTGCAGATCTGTCGCTTGAAATGATTGGAAAACAGATTGCTAAAAAGTGTAAAGGACTCCCTTTAGCTGCAAAATCACTTGGGGGTCTTTTACGTTCTGAACCAAATATTGAGAAATGGGAAGAAGTATTGAACAATGACATATGGGAGTTGCTAGATAAAAATAGTGACATTTTGCCAGCTCTATGGTTGAGCTACCATTATCTACCTCCACATCTGAAGCGTTGTTTTGCTTACTGTTCCATATTTCCTCAAGATTATGAGTTTTACAAATCGAAGCTGGTTTTGTTGTGGATGGCTGAAGATCTCTTACCACTGAGATCGAAGACTACAATTGAAGAAGTCGGAGAGAACTACTTTGATGATCTAATGTCAAGGTCATTTTTTCAACATGTACCTAATCACTTTTCTGGTGAGGCAGTTTTCACAATGCATGACCTTATCCATGACTTAGCAAACTTTGTCTCCGGAGAGTTTTGTGTTAGGTTGGAGGACAATGACTCAGTACTTGAGAATGTCAGCAAGAGTCGCCACTTTTCGTGTATGAATGCATCTGCCGTAATTGATGAATGGGACAGTTTGTATGAAGCTAAGTATTTGCGAACCTTTCTAGTATTAAAATCTGGTAGACTTCCCAACTTAGATTTTGATATATTATTTCTGAAGCTTCAGTGTTTAAGAGTGCTCGATATATCAAGGTACCATATCCGTGAGCTACCTGGTTCAATTAGCAAGTTGAAGCATCTAAGGCACTTGGACTTGTCTTACTCATTAATTAAAAAGTTACCTGATGAAATGTGTACTTTATATAATTTACAGACGTTGTTGTTGTTGGGTTGTGAATCTCTAGTTGAGTTGCCAACTGATTTGGGAAGATTAATCAACTTGCGTCATCTTGATATTGAAGGCACAAAGATAGAAAAGATGCCACCAAGGATGGGCAAAATGAAAGATCTCCAAACATTAAGAGGTAAGTTTGTCCTAGACAAATACACTGGTGATAACATTGTGGAGATTAAACAGCTTCAGCAGTTGCGCGGAACTCTTTGTATCTCGGGGCTTGGTAATAGTGTGCATGTCACAGATGCCATTATGAGAAAGAAGAAGCATCTGGATGAATTAGTTTTGGAATGGGGAGGCGAGTCTGGTGACACCGACGATACACAAAAAGAGAGAGATGTGCTGGAGAACCTCCAACCTCATACAAATCTAAAACAACTCACGATTCAATCTTATGGGGGCACAAGATTTCCAGGTTGGTTGGAAGATCTTTCTAGTTTATCTAATCTGGTTCGTCTTCGACTTCTGGATTGCGGAAATTGTTTGTCGTTGCCATCAGTTGAGCAGCTACCCTCCCTCCAAGAGCTTGAGATTGAAGGATTTAATGGAGTGGTGAATGTGGGTTCTAAGCCTTTTCCTAATCTTCGTAAGCTTGGTCTGAAATCTTGTCCCGAGGTAACCGGGGCATTCATGTTAGCCTGCTTCCCAAAGCTTGAAAGCCTCGTTTTGGAGGATGTGAATGTAGAATCTCTTAATTCCCCTTCACTCCTCTCCCTTGTCCGCCTTAAAATATCTTCATGCCCAAATTTTGTTTGTTTTCCCGATGGAGGGCTGGATGCGCCCAACTTGGAGACCATGGAAGTCCAAGTATGTCCGAAACTGAGGTCAATGCCACAACACATGCACAACCTTCGCCCATCTCTTAGGCGGTTGTTCGTAGATGATTGTCCAGAATTGGAATCATTTCCCGAAGGGGGATTGCCGTCTAAGTTGGAACACTTGCGCATCCGGCGTTGCAAGAAACTCCTTATTGGAAACCGTATGCAGTGGGGTCTACCAACACTCACCTCTCTCAAATTCTTGAGAGTCGACTTTGAGGGATGTGAACAAGTTGTAGATTCATTTCCAGACGAGGGCCTGCTGCCCACCACTCTCGGATCACTCTACATCAACTGTATTTCGAAGCTGGACGGCAAGGGGTTTACACAACTCACCTCTCTTAACCAGTTGGTAATTTGCAATTGCCCTGAACTTCGGTGCTTGCCAGATGAAGGGCTACCCACTTCTCTTTCTGAGCTGTGGATATTTAATTGTCCTTTACTAAAACAACGTTGCCAGAGAGAGACAGGGGAAGATTGGCCCAAGATTGCTCACATCAAAGGGCATTTCTATCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

1080

Amino Acids

122.14

Weight (kDa)

5.73

Isoelectric Point (pI)

46.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 10 - 102 6.8e-18 Rx N-terminal domain
NB-ARC PF00931 173 - 352 1e-34 NB-ARC domain
WHD_DRP PF23559 437 - 507 8e-25 Disease resistance protein Winged helix domain
LRR_14 PF23598 576 - 867 4.4e-29 Leucine-rich repeat region
LRR_8 PF13855 581 - 634 7.1e-06 Leucine rich repeat
LRR_R13L1-DRL21 PF25019 691 - 815 2.1e-36 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000035)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G14470 AT3G14470
fragaria_vesca FvH4_1g01220 FvH4_1g01230 FvH4_3g24551 FvH4_3g24552 FvH4_4g29310 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_6g39860 FvH4_6g39861 FvH4_7g11380
malus_domestica MD00G1072900.v1.1 MD00G1073100.v1.1 MD00G1120600.v1.1 MD00G1120900.v1.1 MD00G1121000.v1.1 MD00G1121200.v1.1 MD00G1152300.v1.1 MD00G1203600.v1.1 MD00G1203700.v1.1 MD02G1250900.v1.1 MD02G1251900.v1.1 MD02G1252800.v1.1 MD02G1277100.v1.1 MD02G1277200.v1.1 MD02G1277400.v1.1 MD02G1286100.v1.1 MD02G1286200.v1.1 MD02G1286900.v1.1 MD03G1006200.v1.1 MD03G1015300.v1.1 MD03G1015500.v1.1 MD03G1015900.v1.1 MD03G1016000.v1.1 MD03G1024900.v1.1 MD03G1025000.v1.1 MD03G1025500.v1.1 MD03G1026000.v1.1 MD03G1026500.v1.1 MD03G1031800.v1.1 MD03G1072200.v1.1 MD07G1028000.v1.1 MD07G1028300.v1.1 MD07G1029400.v1.1 MD07G1029500.v1.1 MD07G1040300.v1.1 MD07G1044500.v1.1 MD07G1045100.v1.1 MD07G1045500.v1.1 MD07G1050700.v1.1 MD07G1050900.v1.1 MD07G1055800.v1.1 MD07G1056200.v1.1 MD07G1056600.v1.1 MD07G1057100.v1.1 MD07G1057200.v1.1 MD08G1056500.v1.1 MD08G1056600.v1.1 MD08G1056700.v1.1 MD08G1056800.v1.1 MD08G1128800.v1.1 MD08G1129500.v1.1 MD08G1130000.v1.1 MD11G1066700.v1.1 MD11G1066800.v1.1 MD11G1066900.v1.1 MD11G1067000.v1.1 MD11G1067500.v1.1 MD11G1069800.v1.1 MD11G1070400.v1.1 MD11G1071100.v1.1 MD11G1071200.v1.1 MD11G1077200.v1.1 MD11G1077700.v1.1 MD11G1077900.v1.1 MD11G1078100.v1.1 MD11G1078300.v1.1 MD11G1078500.v1.1 MD11G1135200.v1.1 MD11G1135400.v1.1 MD11G1152900.v1.1 MD11G1153000.v1.1 MD17G1056800.v1.1
prunus_persica Prupe.2G037800_v2.0.a1 Prupe.2G037800_v2.0.a1 Prupe.2G037800_v2.0.a1 Prupe.2G037800_v2.0.a1 Prupe.2G040500_v2.0.a1 Prupe.2G040700_v2.0.a1 Prupe.2G043000_v2.0.a1 Prupe.2G043100_v2.0.a1 Prupe.2G043200_v2.0.a1 Prupe.2G046000_v2.0.a1 Prupe.2G046300_v2.0.a1 Prupe.2G046400_v2.0.a1 Prupe.2G046400_v2.0.a1 Prupe.2G046700_v2.0.a1 Prupe.2G046900_v2.0.a1 Prupe.2G051100_v2.0.a1 Prupe.2G052200_v2.0.a1 Prupe.2G053600_v2.0.a1 Prupe.2G053600_v2.0.a1 Prupe.2G053600_v2.0.a1 Prupe.2G053600_v2.0.a1 Prupe.2G053700_v2.0.a1 Prupe.2G053800_v2.0.a1 Prupe.2G053900_v2.0.a1 Prupe.2G054000_v2.0.a1 Prupe.2G054100_v2.0.a1 Prupe.2G054200_v2.0.a1 Prupe.2G054300_v2.0.a1 Prupe.2G054300_v2.0.a1 Prupe.2G054300_v2.0.a1 Prupe.2G054300_v2.0.a1 Prupe.2G054500_v2.0.a1 Prupe.2G054700_v2.0.a1 Prupe.4G286000_v2.0.a1 Prupe.4G286000_v2.0.a1 Prupe.4G286000_v2.0.a1 Prupe.6G129800_v2.0.a1 Prupe.6G130000_v2.0.a1 Prupe.6G130000_v2.0.a1
pyrus_communis pycom02g23740 pycom02g23750 pycom02g24320 pycom03g00620 pycom03g01280 pycom03g01320 pycom03g01350 pycom03g01360 pycom03g01370 pycom03g01380 pycom03g01390 pycom03g02160 pycom03g02170 pycom03g05850 pycom03g09810 pycom07g02120 pycom07g02790 pycom07g02800 pycom07g03210 pycom07g03660 pycom07g03670 pycom07g04350 pycom08g10780 pycom08g10840 pycom08g10910 pycom11g05650 pycom11g05670 pycom11g05800 pycom11g05880 pycom11g05890 pycom11g05940 pycom11g06490 pycom11g06500 pycom11g06520 pycom11g06560 pycom11g06570 pycom11g11230 pycom11g13650 pycom17g05700
rosa_chinensis RchiOBHm_Chr1g0318341 RchiOBHm_Chr1g0318901 RchiOBHm_Chr1g0318931 RchiOBHm_Chr1g0327301 RchiOBHm_Chr1g0328491 RchiOBHm_Chr1g0336761 RchiOBHm_Chr1g0336831 RchiOBHm_Chr1g0340721 RchiOBHm_Chr1g0342461 RchiOBHm_Chr1g0342471 RchiOBHm_Chr1g0342481 RchiOBHm_Chr1g0346131 RchiOBHm_Chr1g0346191 RchiOBHm_Chr1g0346211 RchiOBHm_Chr1g0346241 RchiOBHm_Chr1g0346261 RchiOBHm_Chr1g0346281 RchiOBHm_Chr1g0346461 RchiOBHm_Chr1g0346471 RchiOBHm_Chr1g0346481 RchiOBHm_Chr1g0346501 RchiOBHm_Chr1g0347691 RchiOBHm_Chr1g0347701 RchiOBHm_Chr1g0347751 RchiOBHm_Chr1g0347791 RchiOBHm_Chr1g0347971 RchiOBHm_Chr1g0349661 RchiOBHm_Chr1g0349741 RchiOBHm_Chr1g0357561 RchiOBHm_Chr3g0492601 RchiOBHm_Chr5g0039181 RchiOBHm_Chr5g0039231 RchiOBHm_Chr5g0039241 RchiOBHm_Chr5g0039251 RchiOBHm_Chr5g0039531 RchiOBHm_Chr5g0044001 RchiOBHm_Chr5g0044571 RchiOBHm_Chr5g0044611 RchiOBHm_Chr5g0044631 RchiOBHm_Chr5g0044641 RchiOBHm_Chr5g0044651 RchiOBHm_Chr5g0044661 RchiOBHm_Chr5g0044681 RchiOBHm_Chr5g0045221 RchiOBHm_Chr5g0045901 RchiOBHm_Chr5g0045991 RchiOBHm_Chr5g0046001 RchiOBHm_Chr5g0046011
rosa_laevigata RLG00000028715 RLG00000028718 RLG00000029034 RLG00000029926 RLG00000030516 RLG00000034285 RLG00000034288
rosa_multiflora Rmu_co7987576.1_g000001 Rmu_co8028038.1_g000001 Rmu_co8104858.1_g000001 Rmu_co8185828.1_g000001 Rmu_co8227651.1_g000001 Rmu_co8235061.1_g000001 Rmu_co8246845.1_g000001 Rmu_co8254315.1_g000001 Rmu_co8284899.1_g000001 Rmu_co8401461.1_g000001 Rmu_co8475625.1_g000001 Rmu_co8502681.1_g000001 Rmu_sc0000250.1_g000005 Rmu_sc0000492.1_g000001 Rmu_sc0000533.1_g000004 Rmu_sc0000795.1_g000114 Rmu_sc0000831.1_g000039 Rmu_sc0000907.1_g000014 Rmu_sc0000907.1_g000034 Rmu_sc0001035.1_g000007 Rmu_sc0001035.1_g000011 Rmu_sc0001035.1_g000012 Rmu_sc0001099.1_g000003 Rmu_sc0001157.1_g000008 Rmu_sc0001212.1_g000016 Rmu_sc0001212.1_g000017 Rmu_sc0001304.1_g000027 Rmu_sc0001304.1_g000033 Rmu_sc0001773.1_g000019 Rmu_sc0001836.1_g000069 Rmu_sc0001856.1_g000004 Rmu_sc0002286.1_g000003 Rmu_sc0002286.1_g000004 Rmu_sc0002286.1_g000005 Rmu_sc0002286.1_g000007 Rmu_sc0002286.1_g000015 Rmu_sc0002495.1_g000025 Rmu_sc0002545.1_g000008 Rmu_sc0002545.1_g000009 Rmu_sc0002662.1_g000009 Rmu_sc0003363.1_g000019 Rmu_sc0003363.1_g000022 Rmu_sc0003600.1_g000057 Rmu_sc0003809.1_g000036 Rmu_sc0003809.1_g000037 Rmu_sc0005008.1_g000026 Rmu_sc0005008.1_g000028 Rmu_sc0005028.1_g000001 Rmu_sc0005144.1_g000022 Rmu_sc0005167.1_g000004 Rmu_sc0005626.1_g000005 Rmu_sc0005626.1_g000018 Rmu_sc0006228.1_g000011 Rmu_sc0006609.1_g000007 Rmu_sc0006609.1_g000009 Rmu_sc0006609.1_g000015 Rmu_sc0006609.1_g000016 Rmu_sc0006609.1_g000017 Rmu_sc0006609.1_g000018 Rmu_sc0007060.1_g000003 Rmu_sc0007318.1_g000011 Rmu_sc0007992.1_g000002 Rmu_sc0009172.1_g000001 Rmu_sc0010151.1_g000010 Rmu_sc0010151.1_g000011 Rmu_sc0011778.1_g000001 Rmu_sc0011778.1_g000005 Rmu_sc0011778.1_g000009 Rmu_sc0012293.1_g000001 Rmu_sc0012293.1_g000002 Rmu_sc0016606.1_g000001 Rmu_sc0016836.1_g000001 Rmu_sc0021084.1_g000008 Rmu_sc0021449.1_g000001 Rmu_sc0026523.1_g000001 Rmu_sc0027133.1_g000003 Rmu_sc0038674.1_g000001 Rmu_ssc0000255.1_g000053 Rmu_ssc0000255.1_g000063 Rmu_ssc0000255.1_g000064 Rmu_ssc0000263.1_g000004 Rmu_ssc0000400.1_g000027
rosa_roxburghii Rroxscaffold_1G00035290 Rroxscaffold_1G00036350 Rroxscaffold_1G00036360 Rroxscaffold_1G00036400 Rroxscaffold_1G00036460 Rroxscaffold_1G00037000 Rroxscaffold_1G00040440 Rroxscaffold_1G00041890 Rroxscaffold_1G00041920 Rroxscaffold_4G00307460 Rroxscaffold_4G00307500 Rroxscaffold_4G00308500 Rroxscaffold_4G00308510 Rroxscaffold_4G00308770 Rroxscaffold_4G00313020 Rroxscaffold_4G00321580 Rroxscaffold_4G00323030 Rroxscaffold_4G00326850 Rroxscaffold_4G00328770 Rroxscaffold_4G00328780 Rroxscaffold_4G00329310 Rroxscaffold_5G00352110
rosa_rugosa Rorug01G0020700 Rorug01G0023000 Rorug01G0023100 Rorug01G0023200 Rorug01G0023300 Rorug01G0023400 Rorug01G0024500 Rorug01G0025100 Rorug01G0025200 Rorug01G0025400 Rorug01G0025400 Rorug01G0064700 Rorug01G0065300 Rorug01G0127600 Rorug01G0128000 Rorug01G0148000.1 Rorug01G0150500.1 Rorug01G0161600.1 Rorug01G0161800.1 Rorug01G0163600.1 Rorug01G0178300 Rorug01G0178500 Rorug01G0178700 Rorug01G0179900 Rorug01G0180200 Rorug01G0180300 Rorug01G0180400 Rorug01G0189000 Rorug01G0189100 Rorug01G0190500 Rorug01G0204800 Rorug05G0177200 Rorug05G0210300 Rorug05G0210300 Rorug05G0210300 Rorug05G0215400 Rorug05G0215400 Rorug05G0215400 Rorug05G0215400 Rorug05G0215500 Rorug05G0215600 Rorug05G0215800 Rorug05G0215900 Rorug05G0215900 Rorug05G0216000 Rorug05G0216200 Rorug05G0216300 Rorug05G0221900 Rorug07G0276700
rosa_samantha Rh1BG028400 Rh1BG033500 Rh1BG065100 Rh1BG073100 Rh1BG073200 Rh1BG117000 Rh1BG164000 Rh1BG164200 Rh1BG172100 Rh1BG173900 Rh1BG174100 Rh1BG188400 Rh1CG036000 Rh1CG036500 Rh1CG089900 Rh1CG140200 Rh1CG164700 Rh1CG182600 Rh1CG182900 Rh1CG183400 Rh1CG191300 Rh1CG192000 Rh1CG207700 Rh1DG033800 Rh1DG033900 Rh1DG096000 Rh5AG299900 Rh5AG304500 Rh5AG307100 Rh5AG307500 Rh5CG301600 Rh5CG329800 Rh5CG333800 Rh5DG311400 Rh5DG316300 Rh5DG316400 Rh5DG316700 Rh5DG316800 Rh5DG316900 Rh5DG326100 Rh7AG431900 Rh7CG451000
rosa_wichuraiana Rw0G007840 Rw0G009850 Rw0G013000 Rw0G015090 Rw0G021190 Rw1G002610 Rw1G004320 Rw1G006520 Rw1G007250 Rw1G012020 Rw1G013830 Rw1G014770 Rw1G016300 Rw1G016600 Rw1G016650 Rw1G017290 Rw1G017420 Rw1G017630 Rw1G017650 Rw1G017660 Rw1G017690 Rw1G017700 Rw1G018960 Rw5G024660 Rw5G024700 Rw5G024720 Rw5G024740 Rw5G024980 Rw5G027710 Rw5G027720 Rw5G027730 Rw5G027740 Rw5G027750 Rw5G028130 Rw5G028740 Rw5G028750 Rw5G028790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1049
AasI GACNNNNNNGTC 2 cut(s) 650, 802
Acc16I TGCGCA 1 cut(s) 2849
Acc36I ACCTGC 1 cut(s) 1049
Acc65I GGTACC 2 cut(s) 977, 1764
AccB1I GGYRCC 2 cut(s) 977, 1764
AccI GTMKAC 4 cut(s) 636, 1693, 2899, 2934
AccII CGCG 1 cut(s) 2103
AccIII TCCGGA 1 cut(s) 1532
AciI CCGC 7 cut(s) 111, 283, 551, 2103, 2379, 2626, 2773
AclI AACGTT 1 cut(s) 3175
AclWI GGATC 1 cut(s) 3010
AcsI RAATTY 3 cut(s) 815, 2650, 2921
AcuI CTGAAG 8 cut(s) 294, 714, 729, 1304, 1386, 1718, 1748, 2075
AcvI CACGTG 1 cut(s) 926
AfaI GTAC 6 cut(s) 333, 979, 1461, 1572, 1766, 1867
AfiI CCNNNNNNNGG 8 cut(s) 593, 2003, 2572, 2672, 2673, 2819, 2978, 3116
AflIII ACRYGT 2 cut(s) 923, 1456
AhdI GACNNNNNGTC 1 cut(s) 673
AjnI CCWGG 2 cut(s) 1783, 2317
AloI GAACNNNNNNTCC 2 cut(s) 329, 361
Alw21I GWGCWC 1 cut(s) 1752
Alw26I GTCTC 3 cut(s) 1534, 2690, 3182
AlwI GGATC 1 cut(s) 3010
AlwNI CAGNNNCTG 1 cut(s) 334
Ama87I CYCGRG 2 cut(s) 2119, 2516
Aor13HI TCCGGA 1 cut(s) 1532
AoxI GGCC 3 cut(s) 528, 2980, 3203
ApeKI GCWGC 7 cut(s) 118, 315, 318, 941, 1133, 2410, 2986
ApoI RAATTY 3 cut(s) 815, 2650, 2921
ArsI GACNNNNNNTTYG 2 cut(s) 2714, 2746
AseI ATTAAT 2 cut(s) 1838, 1943
Asp700I GAANNNNTTC 2 cut(s) 582, 2808
Asp718I GGTACC 2 cut(s) 977, 1764
AspLEI GCGC 3 cut(s) 2103, 2686, 2850
AspS9I GGNCC 2 cut(s) 2980, 3204
AsuC2I CCSGG 2 cut(s) 946, 2527
AsuHPI GGTGA 6 cut(s) 1490, 2075, 2225, 2470, 2902, 3049
AsuII TTCGAA 1 cut(s) 3026
AvaI CYCGRG 2 cut(s) 2119, 2516
BaeGI GKGCMC 1 cut(s) 2309
BanI GGYRCC 2 cut(s) 977, 1764
BarI GAAGNNNNNNTAC 2 cut(s) 1359, 1391
BbrPI CACGTG 1 cut(s) 926
BbsI GAAGAC 3 cut(s) 110, 1397, 2354
Bbv12I GWGCWC 1 cut(s) 1752
BbvI GCAGC 7 cut(s) 105, 327, 330, 953, 1120, 2422, 2973
BceAI ACGGC 4 cut(s) 813, 1607, 2812, 3052
BcgI CGANNNNNNTGC 4 cut(s) 1059, 1093, 2738, 2772
BciT130I CCWGG 2 cut(s) 1785, 2319
BciVI GTATCC 1 cut(s) 369
BcnI CCSGG 2 cut(s) 946, 2527
BcoDI GTCTC 3 cut(s) 1534, 2690, 3182
BfaI CTAG 8 cut(s) 342, 498, 770, 1220, 1676, 1913, 2048, 2340
BfmI CTRYAG 1 cut(s) 1068
BfuAI ACCTGC 1 cut(s) 1049
BfuI GTATCC 1 cut(s) 369
BglII AGATCT 4 cut(s) 1072, 1369, 2017, 2332
BisI GCNGC 7 cut(s) 119, 316, 319, 942, 1134, 2411, 2987
BlpI GCTNAGC 1 cut(s) 114
BlsI GCNGC 7 cut(s) 120, 317, 320, 943, 1135, 2412, 2988
BmcAI AGTACT 1 cut(s) 1572
Bme1390I CCNGG 4 cut(s) 946, 1785, 2319, 2527
BmeRI GACNNNNNGTC 1 cut(s) 673
BmeT110I CYCGRG 2 cut(s) 2119, 2516
BmgT120I GGNCC 2 cut(s) 2980, 3204
BmiI GGNNCC 2 cut(s) 979, 1766
BmrFI CCNGG 4 cut(s) 946, 1785, 2319, 2527
BmsI GCATC 8 cut(s) 160, 1625, 1816, 1980, 2140, 2182, 2671, 2859
BpiI GAAGAC 3 cut(s) 110, 1397, 2354
BplI GAGNNNNNCTC 2 cut(s) 15, 47
BpmI CTGGAG 2 cut(s) 219, 2270
Bpu1102I GCTNAGC 1 cut(s) 114
Bpu14I TTCGAA 1 cut(s) 3026
BpuEI CTTGAG 5 cut(s) 892, 1302, 1595, 2453, 2947
BpuMI CCSGG 2 cut(s) 946, 2527
BsaAI YACGTR 1 cut(s) 926
BsaI GGTCTC 1 cut(s) 2690
BsaJI CCNNGG 4 cut(s) 1997, 2517, 2526, 2700
BsaWI WCCGGW 2 cut(s) 76, 1532
BsaXI ACNNNNNCTCC 4 cut(s) 1514, 1544, 2406, 2436
Bsc4I CCNNNNNNNGG 8 cut(s) 593, 2003, 2572, 2672, 2673, 2819, 2978, 3116
Bse1I ACTGG 4 cut(s) 568, 974, 2065, 3070
BseAI TCCGGA 1 cut(s) 1532
BseBI CCWGG 2 cut(s) 1785, 2319
BseDI CCNNGG 4 cut(s) 1997, 2517, 2526, 2700
BseLI CCNNNNNNNGG 8 cut(s) 593, 2003, 2572, 2672, 2673, 2819, 2978, 3116
BseMII CTCAG 7 cut(s) 105, 202, 1002, 1373, 1581, 2717, 3129
BseNI ACTGG 4 cut(s) 568, 974, 2065, 3070
BseRI GAGGAG 2 cut(s) 191, 2603
BseSI GKGCMC 1 cut(s) 2309
BseXI GCAGC 7 cut(s) 105, 327, 330, 953, 1120, 2422, 2973
Bsh1236I CGCG 1 cut(s) 2103
BshFI GGCC 3 cut(s) 530, 2982, 3205
BshNI GGYRCC 2 cut(s) 977, 1764
BsiHKAI GWGCWC 1 cut(s) 1752
BsiHKCI CYCGRG 2 cut(s) 2119, 2516
BsiSI CCGG 5 cut(s) 77, 945, 1533, 2526, 2854
BslFI GGGAC 2 cut(s) 1652, 2499
BslI CCNNNNNNNGG 8 cut(s) 593, 2003, 2572, 2672, 2673, 2819, 2978, 3116
BsmAI GTCTC 3 cut(s) 1534, 2690, 3182
BsmFI GGGAC 2 cut(s) 1652, 2499
BsmI GAATGC 3 cut(s) 1060, 1618, 2531
BsnI GGCC 3 cut(s) 530, 2982, 3205
Bso31I GGTCTC 1 cut(s) 2690
BsoBI CYCGRG 2 cut(s) 2119, 2516
Bsp119I TTCGAA 1 cut(s) 3026
Bsp1286I GDGCHC 2 cut(s) 1752, 2309
Bsp13I TCCGGA 1 cut(s) 1532
Bsp143I GATC 8 cut(s) 909, 1072, 1369, 1385, 1429, 2017, 2332, 3002
Bsp1720I GCTNAGC 1 cut(s) 114
Bsp19I CCATGG 1 cut(s) 2700
BspACI CCGC 7 cut(s) 111, 283, 551, 2103, 2379, 2626, 2773
BspANI GGCC 3 cut(s) 530, 2982, 3205
BspCNI CTCAG 7 cut(s) 106, 201, 1003, 1374, 1580, 2718, 3130
BspEI TCCGGA 1 cut(s) 1532
BspFNI CGCG 1 cut(s) 2103
BspLI GGNNCC 2 cut(s) 979, 1766
BspMAI CTGCAG 1 cut(s) 1072
BspMI ACCTGC 1 cut(s) 1049
BspPI GGATC 1 cut(s) 3010
BspT104I TTCGAA 1 cut(s) 3026
BspT107I GGYRCC 2 cut(s) 977, 1764
BspTNI GGTCTC 1 cut(s) 2690
BsrI ACTGG 4 cut(s) 568, 974, 2065, 3070
BssECI CCNNGG 4 cut(s) 1997, 2517, 2526, 2700
BssMI GATC 8 cut(s) 909, 1072, 1369, 1385, 1429, 2017, 2332, 3002
BssNAI GTATAC 1 cut(s) 637
BssT1I CCWWGG 2 cut(s) 1997, 2700
Bst1107I GTATAC 1 cut(s) 637
Bst2UI CCWGG 2 cut(s) 1785, 2319
Bst4CI ACNGT 6 cut(s) 723, 847, 1304, 1643, 2885, 3020
Bst6I CTCTTC 1 cut(s) 40
BstBAI YACGTR 1 cut(s) 926
BstBI TTCGAA 1 cut(s) 3026
BstC8I GCNNGC 4 cut(s) 1245, 2545, 2984, 3107
BstDSI CCRYGG 1 cut(s) 2700
BstEII GGTNACC 1 cut(s) 2521
BstFNI CGCG 1 cut(s) 2103
BstHHI GCGC 3 cut(s) 2103, 2686, 2850
BstKTI GATC 8 cut(s) 912, 1075, 1372, 1388, 1432, 2020, 2335, 3005
BstMAI GTCTC 3 cut(s) 1534, 2690, 3182
BstMBI GATC 8 cut(s) 909, 1072, 1369, 1385, 1429, 2017, 2332, 3002
BstMWI GCNNNNNNNGC 4 cut(s) 1593, 1813, 2683, 2854
BstNI CCWGG 2 cut(s) 1785, 2319
BstNSI RCATGY 4 cut(s) 1046, 1460, 2144, 2749
BstPI GGTNACC 1 cut(s) 2521
BstSCI CCNGG 4 cut(s) 944, 1783, 2317, 2525
BstSFI CTRYAG 1 cut(s) 1068
BstSLI GKGCMC 1 cut(s) 2309
BstUI CGCG 1 cut(s) 2103
BstV1I GCAGC 7 cut(s) 105, 327, 330, 953, 1120, 2422, 2973
BstV2I GAAGAC 3 cut(s) 110, 1397, 2354
BstX2I RGATCY 4 cut(s) 1072, 1369, 2017, 2332
BstXI CCANNNNNNTGG 1 cut(s) 1251
BstYI RGATCY 4 cut(s) 1072, 1369, 2017, 2332
BstZ17I GTATAC 1 cut(s) 637
BsuI GTATCC 1 cut(s) 369
BsuRI GGCC 3 cut(s) 530, 2982, 3205
BtgI CCRYGG 1 cut(s) 2700
BtsI GCAGTG 1 cut(s) 2897
BtsIMutI CAGTG 5 cut(s) 737, 1379, 1742, 2058, 2897
BveI ACCTGC 1 cut(s) 1049
Cac8I GCNNGC 4 cut(s) 1245, 2545, 2984, 3107
CaiI CAGNNNCTG 1 cut(s) 334
CfoI GCGC 3 cut(s) 2103, 2686, 2850
Cfr13I GGNCC 2 cut(s) 2980, 3204
CseI GACGC 1 cut(s) 1943
CsiI ACCWGGT 1 cut(s) 1783
Csp6I GTAC 6 cut(s) 332, 978, 1460, 1571, 1765, 1866
CviQI GTAC 6 cut(s) 332, 978, 1460, 1571, 1765, 1866
DpnI GATC 8 cut(s) 911, 1074, 1371, 1387, 1431, 2019, 2334, 3004
DpnII GATC 8 cut(s) 909, 1072, 1369, 1385, 1429, 2017, 2332, 3002
DrdI GACNNNNNNGTC 2 cut(s) 650, 802
DriI GACNNNNNGTC 1 cut(s) 673
DseDI GACNNNNNNGTC 2 cut(s) 650, 802
Eam1104I CTCTTC 1 cut(s) 40
Eam1105I GACNNNNNGTC 1 cut(s) 673
EarI CTCTTC 1 cut(s) 40
EciI GGCGGA 1 cut(s) 2615
Eco130I CCWWGG 2 cut(s) 1997, 2700
Eco31I GGTCTC 1 cut(s) 2690
Eco57I CTGAAG 8 cut(s) 294, 714, 729, 1304, 1386, 1718, 1748, 2075
Eco72I CACGTG 1 cut(s) 926
Eco88I CYCGRG 2 cut(s) 2119, 2516
Eco91I GGTNACC 1 cut(s) 2521
EcoO109I RGGNCCY 1 cut(s) 2980
EcoO65I GGTNACC 1 cut(s) 2521
EcoRII CCWGG 2 cut(s) 1783, 2317
EcoT14I CCWWGG 2 cut(s) 1997, 2700
EcoT22I ATGCAT 2 cut(s) 1500, 1618
ErhI CCWWGG 2 cut(s) 1997, 2700
FaqI GGGAC 2 cut(s) 1652, 2499
FauNDI CATATG 1 cut(s) 1208
FblI GTMKAC 4 cut(s) 636, 1693, 2899, 2934
Fnu4HI GCNGC 7 cut(s) 119, 316, 319, 942, 1134, 2411, 2987
Fsp4HI GCNGC 7 cut(s) 119, 316, 319, 942, 1134, 2411, 2987
FspBI CTAG 8 cut(s) 342, 498, 770, 1220, 1676, 1913, 2048, 2340
FspI TGCGCA 1 cut(s) 2849
GlaI GCGC 3 cut(s) 2102, 2685, 2849
GluI GCNGC 7 cut(s) 119, 316, 319, 942, 1134, 2411, 2987
GsuI CTGGAG 2 cut(s) 219, 2270
HaeIII GGCC 3 cut(s) 530, 2982, 3205
HapII CCGG 5 cut(s) 77, 945, 1533, 2526, 2854
HgaI GACGC 1 cut(s) 1943
HhaI GCGC 3 cut(s) 2103, 2686, 2850
Hin6I GCGC 3 cut(s) 2101, 2684, 2848
HinP1I GCGC 3 cut(s) 2101, 2684, 2848
HincII GTYRAC 2 cut(s) 992, 2935
HindII GTYRAC 2 cut(s) 992, 2935
HindIII AAGCTT 3 cut(s) 1730, 2495, 2555
HpaII CCGG 5 cut(s) 77, 945, 1533, 2526, 2854
HphI GGTGA 6 cut(s) 1490, 2075, 2225, 2470, 2902, 3049
Hpy166II GTNNAC 8 cut(s) 637, 992, 1694, 1866, 2900, 2935, 2951, 3048
Hpy8I GTNNAC 8 cut(s) 637, 992, 1694, 1866, 2900, 2935, 2951, 3048
Hpy99I CGWCG 3 cut(s) 647, 836, 2225
HpyCH4III ACNGT 6 cut(s) 723, 847, 1304, 1643, 2885, 3020
HpyCH4IV ACGT 4 cut(s) 925, 1159, 1886, 3175
HpyF10VI GCNNNNNNNGC 4 cut(s) 1593, 1813, 2683, 2854
HpySE526I ACGT 4 cut(s) 925, 1159, 1886, 3175
HspAI GCGC 3 cut(s) 2101, 2684, 2848
Kpn2I TCCGGA 1 cut(s) 1532
KpnI GGTACC 2 cut(s) 981, 1768
Kzo9I GATC 8 cut(s) 909, 1072, 1369, 1385, 1429, 2017, 2332, 3002
LmnI GCTCC 2 cut(s) 23, 126
Lsp1109I GCAGC 7 cut(s) 105, 327, 330, 953, 1120, 2422, 2973
LweI GCATC 8 cut(s) 160, 1625, 1816, 1980, 2140, 2182, 2671, 2859
MabI ACCWGGT 1 cut(s) 1783
MaeI CTAG 8 cut(s) 342, 498, 770, 1220, 1676, 1913, 2048, 2340
MaeII ACGT 4 cut(s) 925, 1159, 1886, 3175
MaeIII GTNAC 8 cut(s) 735, 916, 1063, 1232, 1848, 2143, 2213, 2521
MalI GATC 8 cut(s) 911, 1074, 1371, 1387, 1431, 2019, 2334, 3004
MboI GATC 8 cut(s) 909, 1072, 1369, 1385, 1429, 2017, 2332, 3002
MfeI CAATTG 3 cut(s) 588, 1398, 3085
MflI RGATCY 4 cut(s) 1072, 1369, 2017, 2332
MhlI GDGCHC 2 cut(s) 1752, 2309
MlyI GAGTC 8 cut(s) 210, 503, 660, 1116, 1559, 1600, 2216, 2940
MmeI TCCRAC 6 cut(s) 237, 1390, 1533, 2284, 2307, 2817
Mph1103I ATGCAT 2 cut(s) 1500, 1618
MroI TCCGGA 1 cut(s) 1532
MroXI GAANNNNTTC 2 cut(s) 582, 2808
MslI CAYNNNNRTG 2 cut(s) 1773, 2178
MspA1I CMGCKG 1 cut(s) 113
MspI CCGG 5 cut(s) 77, 945, 1533, 2526, 2854
MspR9I CCNGG 4 cut(s) 946, 1785, 2319, 2527
MunI CAATTG 3 cut(s) 588, 1398, 3085
Mva1269I GAATGC 3 cut(s) 1060, 1618, 2531
MvaI CCWGG 2 cut(s) 1785, 2319
MvnI CGCG 1 cut(s) 2103
MwoI GCNNNNNNNGC 4 cut(s) 1593, 1813, 2683, 2854
NciI CCSGG 2 cut(s) 946, 2527
NcoI CCATGG 1 cut(s) 2700
NdeI CATATG 1 cut(s) 1208
NdeII GATC 8 cut(s) 909, 1072, 1369, 1385, 1429, 2017, 2332, 3002
NlaIV GGNNCC 2 cut(s) 979, 1766
NmuCI GTSAC 5 cut(s) 735, 916, 1232, 2143, 2213
NsbI TGCGCA 1 cut(s) 2849
NsiI ATGCAT 2 cut(s) 1500, 1618
NspI RCATGY 4 cut(s) 1046, 1460, 2144, 2749
NspV TTCGAA 1 cut(s) 3026
PacI TTAATTAA 1 cut(s) 1842
PaqCI CACCTGC 1 cut(s) 1049
PciI ACATGT 1 cut(s) 1456
PcsI WCGNNNNNNNCGW 1 cut(s) 639
PctI GAATGC 3 cut(s) 1060, 1618, 2531
PdmI GAANNNNTTC 2 cut(s) 582, 2808
PfeI GAWTC 7 cut(s) 305, 385, 1907, 2290, 2591, 2804, 2963
PflFI GACNNNGTC 1 cut(s) 650
PkrI GCNGC 7 cut(s) 120, 317, 320, 943, 1135, 2412, 2988
PleI GAGTC 8 cut(s) 209, 502, 659, 1116, 1559, 1599, 2215, 2939
PmaCI CACGTG 1 cut(s) 926
PmlI CACGTG 1 cut(s) 926
PpsI GAGTC 8 cut(s) 209, 502, 659, 1116, 1559, 1599, 2215, 2939
Ppu21I YACGTR 1 cut(s) 926
PscI ACATGT 1 cut(s) 1456
PshBI ATTAAT 2 cut(s) 1838, 1943
Psp1406I AACGTT 1 cut(s) 3175
Psp6I CCWGG 2 cut(s) 1783, 2317
PspCI CACGTG 1 cut(s) 926
PspEI GGTNACC 1 cut(s) 2521
PspGI CCWGG 2 cut(s) 1783, 2317
PspN4I GGNNCC 2 cut(s) 979, 1766
PspPI GGNCC 2 cut(s) 2980, 3204
PstI CTGCAG 1 cut(s) 1072
PstNI CAGNNNCTG 1 cut(s) 334
PsuI RGATCY 4 cut(s) 1072, 1369, 2017, 2332
PsyI GACNNNGTC 1 cut(s) 650
RsaI GTAC 6 cut(s) 333, 979, 1461, 1572, 1766, 1867
RsaNI GTAC 6 cut(s) 332, 978, 1460, 1571, 1765, 1866
RseI CAYNNNNRTG 2 cut(s) 1773, 2178
SalI GTCGAC 1 cut(s) 2933
SatI GCNGC 7 cut(s) 119, 316, 319, 942, 1134, 2411, 2987
Sau3AI GATC 8 cut(s) 909, 1072, 1369, 1385, 1429, 2017, 2332, 3002
Sau96I GGNCC 2 cut(s) 2980, 3204
ScaI AGTACT 1 cut(s) 1572
SchI GAGTC 8 cut(s) 210, 503, 660, 1116, 1559, 1600, 2216, 2940
ScrFI CCNGG 4 cut(s) 946, 1785, 2319, 2527
SduI GDGCHC 2 cut(s) 1752, 2309
SexAI ACCWGGT 1 cut(s) 1783
SfaNI GCATC 8 cut(s) 160, 1625, 1816, 1980, 2140, 2182, 2671, 2859
SfcI CTRYAG 1 cut(s) 1068
SfuI TTCGAA 1 cut(s) 3026
SmiMI CAYNNNNRTG 2 cut(s) 1773, 2178
SmlI CTYRAG 5 cut(s) 871, 1317, 1574, 2432, 2926
SmoI CTYRAG 5 cut(s) 871, 1317, 1574, 2432, 2926
SsiI CCGC 7 cut(s) 111, 283, 551, 2103, 2379, 2626, 2773
SspI AATATT 1 cut(s) 1174
SspMI CTAG 8 cut(s) 342, 498, 770, 1220, 1676, 1913, 2048, 2340
StyD4I CCNGG 4 cut(s) 944, 1783, 2317, 2525
StyI CCWWGG 2 cut(s) 1997, 2700
TaaI ACNGT 6 cut(s) 723, 847, 1304, 1643, 2885, 3020
TaiI ACGT 4 cut(s) 928, 1162, 1889, 3178
TaqI TCGA 9 cut(s) 94, 165, 831, 1340, 1388, 1752, 2365, 2934, 3026
TatI WGTACW 2 cut(s) 1570, 1865
TfiI GAWTC 7 cut(s) 305, 385, 1907, 2290, 2591, 2804, 2963
TscAI CASTG 5 cut(s) 744, 1386, 1742, 2065, 2897
TseFI GTSAC 5 cut(s) 735, 916, 1232, 2143, 2213
TseI GCWGC 7 cut(s) 118, 315, 318, 941, 1133, 2410, 2986
Tsp45I GTSAC 5 cut(s) 735, 916, 1232, 2143, 2213
TspGWI ACGGA 1 cut(s) 1763
TspRI CASTG 5 cut(s) 744, 1386, 1742, 2065, 2897
Tth111I GACNNNGTC 1 cut(s) 650
VspI ATTAAT 2 cut(s) 1838, 1943
XapI RAATTY 3 cut(s) 815, 2650, 2921
XceI RCATGY 4 cut(s) 1046, 1460, 2144, 2749
XmiI GTMKAC 4 cut(s) 636, 1693, 2899, 2934
XmnI GAANNNNTTC 2 cut(s) 582, 2808
XspI CTAG 8 cut(s) 342, 498, 770, 1220, 1676, 1913, 2048, 2340
ZrmI AGTACT 1 cut(s) 1572
Zsp2I ATGCAT 2 cut(s) 1500, 1618
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.