Belongs to the disease resistance NB-LRR family
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Rx_N | PF18052 | 9 - 102 | 3.2e-17 | Rx N-terminal domain |
| NB-ARC | PF00931 | 180 - 359 | 6.8e-33 | NB-ARC domain |
| WHD_DRP | PF23559 | 444 - 514 | 3e-25 | Disease resistance protein Winged helix domain |
| LRR_14 | PF23598 | 575 - 869 | 1.4e-28 | Leucine-rich repeat region |
| LRR_R13L1-DRL21 | PF25019 | 693 - 817 | 1.7e-36 | R13L1/DRL21 LRRs |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1070 |
| Acc36I | ACCTGC | 1 cut(s) | 1070 |
| Acc65I | GGTACC | 2 cut(s) | 998, 1770 |
| AccB1I | GGYRCC | 2 cut(s) | 998, 1770 |
| AccI | GTMKAC | 4 cut(s) | 429, 657, 2905, 2940 |
| AccII | CGCG | 2 cut(s) | 2109, 3090 |
| AccIII | TCCGGA | 1 cut(s) | 120 |
| AciI | CCGC | 7 cut(s) | 572, 758, 1298, 1903, 2000, 2109, 2744 |
| AclI | AACGTT | 1 cut(s) | 3181 |
| AclWI | GGATC | 2 cut(s) | 112, 1088 |
| AcoI | YGGCCR | 2 cut(s) | 615, 759 |
| AcsI | RAATTY | 5 cut(s) | 368, 836, 1405, 2846, 2927 |
| AcuI | CTGAAG | 7 cut(s) | 27, 291, 735, 1325, 1407, 1754, 2081 |
| AcvI | CACGTG | 1 cut(s) | 947 |
| AfaI | GTAC | 6 cut(s) | 1000, 1482, 1593, 1772, 1873, 2855 |
| AflII | CTTAAG | 1 cut(s) | 892 |
| AflIII | ACRYGT | 4 cut(s) | 944, 955, 1477, 1839 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 694 |
| AhlI | ACTAGT | 1 cut(s) | 872 |
| AjnI | CCWGG | 2 cut(s) | 389, 2323 |
| Alw21I | GWGCWC | 1 cut(s) | 1758 |
| Alw26I | GTCTC | 5 cut(s) | 331, 893, 1555, 1973, 3188 |
| AlwI | GGATC | 2 cut(s) | 112, 1088 |
| Ama87I | CYCGRG | 2 cut(s) | 2125, 2522 |
| Aor13HI | TCCGGA | 1 cut(s) | 120 |
| AoxI | GGCC | 4 cut(s) | 549, 615, 759, 3209 |
| ApeKI | GCWGC | 8 cut(s) | 312, 315, 983, 1154, 1786, 2416, 2989, 2992 |
| ApoI | RAATTY | 5 cut(s) | 368, 836, 1405, 2846, 2927 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2720, 2752 |
| AseI | ATTAAT | 1 cut(s) | 1949 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2814 |
| Asp718I | GGTACC | 2 cut(s) | 998, 1770 |
| AspLEI | GCGC | 2 cut(s) | 2109, 2692 |
| AspS9I | GGNCC | 2 cut(s) | 1683, 3210 |
| AsuC2I | CCSGG | 2 cut(s) | 1767, 2533 |
| AsuHPI | GGTGA | 4 cut(s) | 2081, 2476, 2908, 3055 |
| AsuII | TTCGAA | 2 cut(s) | 1409, 3032 |
| AvaI | CYCGRG | 2 cut(s) | 2125, 2522 |
| AvaII | GGWCC | 1 cut(s) | 1683 |
| BaeGI | GKGCMC | 1 cut(s) | 2315 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1754, 1787 |
| BalI | TGGCCA | 1 cut(s) | 617 |
| BanI | GGYRCC | 2 cut(s) | 998, 1770 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 475, 507, 1380, 1412 |
| BbrPI | CACGTG | 1 cut(s) | 947 |
| BbsI | GAAGAC | 7 cut(s) | 107, 490, 824, 1123, 1418, 1616, 2360 |
| Bbv12I | GWGCWC | 1 cut(s) | 1758 |
| BbvI | GCAGC | 8 cut(s) | 324, 327, 970, 1141, 1773, 2428, 2976, 2979 |
| BceAI | ACGGC | 2 cut(s) | 2818, 3058 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1080, 1114 |
| BciT130I | CCWGG | 2 cut(s) | 391, 2325 |
| BciVI | GTATCC | 1 cut(s) | 387 |
| BclI | TGATCA | 1 cut(s) | 1645 |
| BcnI | CCSGG | 2 cut(s) | 1767, 2533 |
| BcoDI | GTCTC | 5 cut(s) | 331, 893, 1555, 1973, 3188 |
| BcuI | ACTAGT | 1 cut(s) | 872 |
| BfmI | CTRYAG | 2 cut(s) | 1089, 3022 |
| BfrI | CTTAAG | 1 cut(s) | 892 |
| BfuAI | ACCTGC | 1 cut(s) | 1070 |
| BfuI | GTATCC | 1 cut(s) | 387 |
| BglII | AGATCT | 4 cut(s) | 787, 1390, 2023, 3240 |
| BmcAI | AGTACT | 1 cut(s) | 1593 |
| Bme1390I | CCNGG | 4 cut(s) | 391, 1767, 2325, 2533 |
| Bme18I | GGWCC | 1 cut(s) | 1683 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 694 |
| BmeT110I | CYCGRG | 2 cut(s) | 2125, 2522 |
| BmgT120I | GGNCC | 2 cut(s) | 1683, 3210 |
| BmiI | GGNNCC | 2 cut(s) | 1000, 1772 |
| BmrFI | CCNGG | 4 cut(s) | 391, 1767, 2325, 2533 |
| BmsI | GCATC | 8 cut(s) | 157, 1309, 1822, 1852, 1986, 2146, 2677, 3027 |
| BpiI | GAAGAC | 7 cut(s) | 107, 490, 824, 1123, 1418, 1616, 2360 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 12, 44 |
| BpmI | CTGGAG | 2 cut(s) | 1575, 2276 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1150 |
| Bpu14I | TTCGAA | 2 cut(s) | 1409, 3032 |
| BpuEI | CTTGAG | 6 cut(s) | 326, 1323, 1742, 2276, 2459, 2953 |
| BpuMI | CCSGG | 2 cut(s) | 1767, 2533 |
| BsaAI | YACGTR | 1 cut(s) | 947 |
| BsaJI | CCNNGG | 7 cut(s) | 91, 108, 618, 1766, 2003, 2523, 2532 |
| BsaWI | WCCGGW | 3 cut(s) | 73, 120, 3105 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2412, 2442 |
| Bse118I | RCCGGY | 1 cut(s) | 2225 |
| Bse1I | ACTGG | 3 cut(s) | 589, 1599, 2071 |
| Bse3DI | GCAATG | 2 cut(s) | 1872, 2738 |
| BseAI | TCCGGA | 1 cut(s) | 120 |
| BseBI | CCWGG | 2 cut(s) | 391, 2325 |
| BseDI | CCNNGG | 7 cut(s) | 91, 108, 618, 1766, 2003, 2523, 2532 |
| BseMI | GCAATG | 2 cut(s) | 1872, 2738 |
| BseMII | CTCAG | 7 cut(s) | 199, 1023, 1602, 1808, 2495, 2723, 3019 |
| BseNI | ACTGG | 3 cut(s) | 589, 1599, 2071 |
| BseRI | GAGGAG | 2 cut(s) | 188, 2867 |
| BseSI | GKGCMC | 1 cut(s) | 2315 |
| BseXI | GCAGC | 8 cut(s) | 324, 327, 970, 1141, 1773, 2428, 2976, 2979 |
| Bsh1236I | CGCG | 2 cut(s) | 2109, 3090 |
| BshFI | GGCC | 4 cut(s) | 551, 617, 761, 3211 |
| BshNI | GGYRCC | 2 cut(s) | 998, 1770 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1758 |
| BsiHKCI | CYCGRG | 2 cut(s) | 2125, 2522 |
| BsiSI | CCGG | 6 cut(s) | 74, 121, 1766, 2226, 2532, 3106 |
| BslFI | GGGAC | 3 cut(s) | 2135, 2505, 2608 |
| BsmAI | GTCTC | 5 cut(s) | 331, 893, 1555, 1973, 3188 |
| BsmFI | GGGAC | 3 cut(s) | 2135, 2505, 2608 |
| BsmI | GAATGC | 2 cut(s) | 1081, 2537 |
| BsnI | GGCC | 4 cut(s) | 551, 617, 761, 3211 |
| BsoBI | CYCGRG | 2 cut(s) | 2125, 2522 |
| Bsp119I | TTCGAA | 2 cut(s) | 1409, 3032 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1758, 2315 |
| Bsp13I | TCCGGA | 1 cut(s) | 120 |
| Bsp1407I | TGTACA | 1 cut(s) | 2853 |
| Bsp19I | CCATGG | 1 cut(s) | 618 |
| Bsp68I | TCGCGA | 1 cut(s) | 3090 |
| BspACI | CCGC | 7 cut(s) | 572, 758, 1298, 1903, 2000, 2109, 2744 |
| BspANI | GGCC | 4 cut(s) | 551, 617, 761, 3211 |
| BspCNI | CTCAG | 7 cut(s) | 198, 1024, 1601, 1809, 2496, 2724, 3018 |
| BspEI | TCCGGA | 1 cut(s) | 120 |
| BspFNI | CGCG | 2 cut(s) | 2109, 3090 |
| BspLI | GGNNCC | 2 cut(s) | 1000, 1772 |
| BspMAI | CTGCAG | 1 cut(s) | 1093 |
| BspMI | ACCTGC | 1 cut(s) | 1070 |
| BspPI | GGATC | 2 cut(s) | 112, 1088 |
| BspT104I | TTCGAA | 2 cut(s) | 1409, 3032 |
| BspT107I | GGYRCC | 2 cut(s) | 998, 1770 |
| BspTI | CTTAAG | 1 cut(s) | 892 |
| BsrDI | GCAATG | 2 cut(s) | 1872, 2738 |
| BsrFI | RCCGGY | 1 cut(s) | 2225 |
| BsrGI | TGTACA | 1 cut(s) | 2853 |
| BsrI | ACTGG | 3 cut(s) | 589, 1599, 2071 |
| BssAI | RCCGGY | 1 cut(s) | 2225 |
| BssECI | CCNNGG | 7 cut(s) | 91, 108, 618, 1766, 2003, 2523, 2532 |
| BssNAI | GTATAC | 1 cut(s) | 658 |
| BssT1I | CCWWGG | 2 cut(s) | 618, 2003 |
| Bst1107I | GTATAC | 1 cut(s) | 658 |
| Bst2UI | CCWGG | 2 cut(s) | 391, 2325 |
| Bst6I | CTCTTC | 1 cut(s) | 37 |
| BstAFI | CTTAAG | 1 cut(s) | 892 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2752 |
| BstAUI | TGTACA | 1 cut(s) | 2853 |
| BstBAI | YACGTR | 1 cut(s) | 947 |
| BstBI | TTCGAA | 2 cut(s) | 1409, 3032 |
| BstC8I | GCNNGC | 4 cut(s) | 988, 1266, 2551, 3113 |
| BstDSI | CCRYGG | 1 cut(s) | 618 |
| BstEII | GGTNACC | 1 cut(s) | 2527 |
| BstFNI | CGCG | 2 cut(s) | 2109, 3090 |
| BstHHI | GCGC | 2 cut(s) | 2109, 2692 |
| BstMAI | GTCTC | 5 cut(s) | 331, 893, 1555, 1973, 3188 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 217, 1306, 1819, 2689, 2698, 2752 |
| BstNI | CCWGG | 2 cut(s) | 391, 2325 |
| BstNSI | RCATGY | 7 cut(s) | 990, 1067, 1481, 1843, 2183, 2588, 2755 |
| BstPI | GGTNACC | 1 cut(s) | 2527 |
| BstSCI | CCNGG | 4 cut(s) | 389, 1765, 2323, 2531 |
| BstSFI | CTRYAG | 2 cut(s) | 1089, 3022 |
| BstSLI | GKGCMC | 1 cut(s) | 2315 |
| BstUI | CGCG | 2 cut(s) | 2109, 3090 |
| BstV1I | GCAGC | 8 cut(s) | 324, 327, 970, 1141, 1773, 2428, 2976, 2979 |
| BstV2I | GAAGAC | 7 cut(s) | 107, 490, 824, 1123, 1418, 1616, 2360 |
| BstX2I | RGATCY | 5 cut(s) | 787, 1093, 1390, 2023, 3240 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1272 |
| BstYI | RGATCY | 5 cut(s) | 787, 1093, 1390, 2023, 3240 |
| BstZ17I | GTATAC | 1 cut(s) | 658 |
| BsuI | GTATCC | 1 cut(s) | 387 |
| BsuRI | GGCC | 4 cut(s) | 551, 617, 761, 3211 |
| BtgI | CCRYGG | 1 cut(s) | 618 |
| BtgZI | GCGATG | 1 cut(s) | 1083 |
| BtsI | GCAGTG | 2 cut(s) | 887, 2903 |
| BtsIMutI | CAGTG | 3 cut(s) | 887, 1221, 2903 |
| BtuMI | TCGCGA | 1 cut(s) | 3090 |
| BveI | ACCTGC | 1 cut(s) | 1070 |
| Cac8I | GCNNGC | 4 cut(s) | 988, 1266, 2551, 3113 |
| CfoI | GCGC | 2 cut(s) | 2109, 2692 |
| Cfr10I | RCCGGY | 1 cut(s) | 2225 |
| Cfr13I | GGNCC | 2 cut(s) | 1683, 3210 |
| CseI | GACGC | 1 cut(s) | 1949 |
| Csp6I | GTAC | 6 cut(s) | 999, 1481, 1592, 1771, 1872, 2854 |
| CviQI | GTAC | 6 cut(s) | 999, 1481, 1592, 1771, 1872, 2854 |
| DriI | GACNNNNNGTC | 1 cut(s) | 694 |
| EaeI | YGGCCR | 2 cut(s) | 615, 759 |
| Eam1104I | CTCTTC | 1 cut(s) | 37 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 694 |
| EarI | CTCTTC | 1 cut(s) | 37 |
| Eco130I | CCWWGG | 2 cut(s) | 618, 2003 |
| Eco32I | GATATC | 1 cut(s) | 1916 |
| Eco47I | GGWCC | 1 cut(s) | 1683 |
| Eco57I | CTGAAG | 7 cut(s) | 27, 291, 735, 1325, 1407, 1754, 2081 |
| Eco72I | CACGTG | 1 cut(s) | 947 |
| Eco88I | CYCGRG | 2 cut(s) | 2125, 2522 |
| Eco91I | GGTNACC | 1 cut(s) | 2527 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1683 |
| EcoO65I | GGTNACC | 1 cut(s) | 2527 |
| EcoRI | GAATTC | 2 cut(s) | 1405, 2846 |
| EcoRII | CCWGG | 2 cut(s) | 389, 2323 |
| EcoRV | GATATC | 1 cut(s) | 1916 |
| EcoT14I | CCWWGG | 2 cut(s) | 618, 2003 |
| EcoT22I | ATGCAT | 1 cut(s) | 1521 |
| ErhI | CCWWGG | 2 cut(s) | 618, 2003 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 429, 461 |
| FaqI | GGGAC | 3 cut(s) | 2135, 2505, 2608 |
| FauI | CCCGC | 1 cut(s) | 1896 |
| FauNDI | CATATG | 1 cut(s) | 1229 |
| FbaI | TGATCA | 1 cut(s) | 1645 |
| FblI | GTMKAC | 4 cut(s) | 429, 657, 2905, 2940 |
| GlaI | GCGC | 2 cut(s) | 2108, 2691 |
| GsuI | CTGGAG | 2 cut(s) | 1575, 2276 |
| HaeIII | GGCC | 4 cut(s) | 551, 617, 761, 3211 |
| HapII | CCGG | 6 cut(s) | 74, 121, 1766, 2226, 2532, 3106 |
| HgaI | GACGC | 1 cut(s) | 1949 |
| HhaI | GCGC | 2 cut(s) | 2109, 2692 |
| Hin6I | GCGC | 2 cut(s) | 2107, 2690 |
| HinP1I | GCGC | 2 cut(s) | 2107, 2690 |
| HincII | GTYRAC | 3 cut(s) | 430, 825, 2941 |
| HindII | GTYRAC | 3 cut(s) | 430, 825, 2941 |
| HindIII | AAGCTT | 3 cut(s) | 1736, 2561, 3260 |
| HpaII | CCGG | 6 cut(s) | 74, 121, 1766, 2226, 2532, 3106 |
| HphI | GGTGA | 4 cut(s) | 2081, 2476, 2908, 3055 |
| Hpy166II | GTNNAC | 9 cut(s) | 430, 658, 825, 1013, 1872, 2906, 2941, 2957, 3054 |
| Hpy8I | GTNNAC | 9 cut(s) | 430, 658, 825, 1013, 1872, 2906, 2941, 2957, 3054 |
| Hpy99I | CGWCG | 2 cut(s) | 434, 1405 |
| HpyAV | CCTTC | 8 cut(s) | 452, 525, 710, 1013, 1078, 2622, 2771, 2816 |
| HpyCH4IV | ACGT | 7 cut(s) | 125, 821, 946, 955, 1180, 1892, 3181 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 217, 1306, 1819, 2689, 2698, 2752 |
| HpySE526I | ACGT | 7 cut(s) | 125, 821, 946, 955, 1180, 1892, 3181 |
| HspAI | GCGC | 2 cut(s) | 2107, 2690 |
| Kpn2I | TCCGGA | 1 cut(s) | 120 |
| KpnI | GGTACC | 2 cut(s) | 1002, 1774 |
| Ksp22I | TGATCA | 1 cut(s) | 1645 |
| LmnI | GCTCC | 1 cut(s) | 20 |
| Lsp1109I | GCAGC | 8 cut(s) | 324, 327, 970, 1141, 1773, 2428, 2976, 2979 |
| LweI | GCATC | 8 cut(s) | 157, 1309, 1822, 1852, 1986, 2146, 2677, 3027 |
| MaeII | ACGT | 7 cut(s) | 125, 821, 946, 955, 1180, 1892, 3181 |
| MfeI | CAATTG | 1 cut(s) | 609 |
| MflI | RGATCY | 5 cut(s) | 787, 1093, 1390, 2023, 3240 |
| MhlI | GDGCHC | 2 cut(s) | 1758, 2315 |
| MlsI | TGGCCA | 1 cut(s) | 617 |
| MluNI | TGGCCA | 1 cut(s) | 617 |
| MlyI | GAGTC | 9 cut(s) | 207, 333, 681, 895, 1137, 1580, 1606, 2515, 2946 |
| MmeI | TCCRAC | 7 cut(s) | 234, 1411, 1554, 2290, 2313, 2695, 2823 |
| Mox20I | TGGCCA | 1 cut(s) | 617 |
| Mph1103I | ATGCAT | 1 cut(s) | 1521 |
| MroI | TCCGGA | 1 cut(s) | 120 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2814 |
| MscI | TGGCCA | 1 cut(s) | 617 |
| MslI | CAYNNNNRTG | 5 cut(s) | 243, 599, 1779, 2184, 2589 |
| Msp20I | TGGCCA | 1 cut(s) | 617 |
| MspCI | CTTAAG | 1 cut(s) | 892 |
| MspI | CCGG | 6 cut(s) | 74, 121, 1766, 2226, 2532, 3106 |
| MspR9I | CCNGG | 4 cut(s) | 391, 1767, 2325, 2533 |
| MunI | CAATTG | 1 cut(s) | 609 |
| Mva1269I | GAATGC | 2 cut(s) | 1081, 2537 |
| MvaI | CCWGG | 2 cut(s) | 391, 2325 |
| MvnI | CGCG | 2 cut(s) | 2109, 3090 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 217, 1306, 1819, 2689, 2698, 2752 |
| NciI | CCSGG | 2 cut(s) | 1767, 2533 |
| NcoI | CCATGG | 1 cut(s) | 618 |
| NdeI | CATATG | 1 cut(s) | 1229 |
| NlaIV | GGNNCC | 2 cut(s) | 1000, 1772 |
| NmeAIII | GCCGAG | 1 cut(s) | 2994 |
| NmuCI | GTSAC | 5 cut(s) | 868, 937, 1583, 1695, 2464 |
| NruI | TCGCGA | 1 cut(s) | 3090 |
| NsiI | ATGCAT | 1 cut(s) | 1521 |
| NspI | RCATGY | 7 cut(s) | 990, 1067, 1481, 1843, 2183, 2588, 2755 |
| NspV | TTCGAA | 2 cut(s) | 1409, 3032 |
| PaeI | GCATGC | 1 cut(s) | 990 |
| PaqCI | CACCTGC | 1 cut(s) | 1070 |
| PciI | ACATGT | 2 cut(s) | 1477, 1839 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 660, 952 |
| PctI | GAATGC | 2 cut(s) | 1081, 2537 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2814 |
| PfeI | GAWTC | 9 cut(s) | 65, 386, 1363, 1486, 2296, 2513, 2597, 2810, 2969 |
| PfoI | TCCNGGA | 1 cut(s) | 389 |
| PleI | GAGTC | 9 cut(s) | 206, 333, 680, 894, 1137, 1580, 1606, 2514, 2945 |
| PmaCI | CACGTG | 1 cut(s) | 947 |
| PmlI | CACGTG | 1 cut(s) | 947 |
| PpsI | GAGTC | 9 cut(s) | 206, 333, 680, 894, 1137, 1580, 1606, 2514, 2945 |
| Ppu21I | YACGTR | 1 cut(s) | 947 |
| PpuMI | RGGWCCY | 1 cut(s) | 1683 |
| PscI | ACATGT | 2 cut(s) | 1477, 1839 |
| PshBI | ATTAAT | 1 cut(s) | 1949 |
| Psp1406I | AACGTT | 1 cut(s) | 3181 |
| Psp5II | RGGWCCY | 1 cut(s) | 1683 |
| Psp6I | CCWGG | 2 cut(s) | 389, 2323 |
| PspCI | CACGTG | 1 cut(s) | 947 |
| PspEI | GGTNACC | 1 cut(s) | 2527 |
| PspGI | CCWGG | 2 cut(s) | 389, 2323 |
| PspN4I | GGNNCC | 2 cut(s) | 1000, 1772 |
| PspPI | GGNCC | 2 cut(s) | 1683, 3210 |
| PspPPI | RGGWCCY | 1 cut(s) | 1683 |
| PstI | CTGCAG | 1 cut(s) | 1093 |
| PsuI | RGATCY | 5 cut(s) | 787, 1093, 1390, 2023, 3240 |
| RruI | TCGCGA | 1 cut(s) | 3090 |
| RsaI | GTAC | 6 cut(s) | 1000, 1482, 1593, 1772, 1873, 2855 |
| RsaNI | GTAC | 6 cut(s) | 999, 1481, 1592, 1771, 1872, 2854 |
| RseI | CAYNNNNRTG | 5 cut(s) | 243, 599, 1779, 2184, 2589 |
| SalI | GTCGAC | 2 cut(s) | 428, 2939 |
| Sau96I | GGNCC | 2 cut(s) | 1683, 3210 |
| ScaI | AGTACT | 1 cut(s) | 1593 |
| SchI | GAGTC | 9 cut(s) | 207, 333, 681, 895, 1137, 1580, 1606, 2515, 2946 |
| ScrFI | CCNGG | 4 cut(s) | 391, 1767, 2325, 2533 |
| SduI | GDGCHC | 2 cut(s) | 1758, 2315 |
| SfaNI | GCATC | 8 cut(s) | 157, 1309, 1822, 1852, 1986, 2146, 2677, 3027 |
| SfcI | CTRYAG | 2 cut(s) | 1089, 3022 |
| SfuI | TTCGAA | 2 cut(s) | 1409, 3032 |
| SgrAI | CRCCGGYG | 1 cut(s) | 2225 |
| SinI | GGWCC | 1 cut(s) | 1683 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 243, 599, 1779, 2184, 2589 |
| SmlI | CTYRAG | 7 cut(s) | 341, 892, 1338, 1757, 2291, 2438, 2932 |
| SmoI | CTYRAG | 7 cut(s) | 341, 892, 1338, 1757, 2291, 2438, 2932 |
| SpeI | ACTAGT | 1 cut(s) | 872 |
| SphI | GCATGC | 1 cut(s) | 990 |
| SsiI | CCGC | 7 cut(s) | 572, 758, 1298, 1903, 2000, 2109, 2744 |
| SspI | AATATT | 2 cut(s) | 1195, 2140 |
| StyD4I | CCNGG | 4 cut(s) | 389, 1765, 2323, 2531 |
| StyI | CCWWGG | 2 cut(s) | 618, 2003 |
| TaiI | ACGT | 7 cut(s) | 128, 824, 949, 958, 1183, 1895, 3184 |
| TaqII | GACCGA | 1 cut(s) | 684 |
| TatI | WGTACW | 3 cut(s) | 1591, 1871, 2853 |
| TauI | GCSGC | 3 cut(s) | 761, 2002, 2746 |
| TfiI | GAWTC | 9 cut(s) | 65, 386, 1363, 1486, 2296, 2513, 2597, 2810, 2969 |
| TscAI | CASTG | 3 cut(s) | 887, 1228, 2903 |
| TseFI | GTSAC | 5 cut(s) | 868, 937, 1583, 1695, 2464 |
| TseI | GCWGC | 8 cut(s) | 312, 315, 983, 1154, 1786, 2416, 2989, 2992 |
| Tsp45I | GTSAC | 5 cut(s) | 868, 937, 1583, 1695, 2464 |
| TspGWI | ACGGA | 1 cut(s) | 447 |
| TspRI | CASTG | 3 cut(s) | 887, 1228, 2903 |
| Vha464I | CTTAAG | 1 cut(s) | 892 |
| VpaK11BI | GGWCC | 1 cut(s) | 1683 |
| VspI | ATTAAT | 1 cut(s) | 1949 |
| XapI | RAATTY | 5 cut(s) | 368, 836, 1405, 2846, 2927 |
| XbaI | TCTAGA | 1 cut(s) | 194 |
| XceI | RCATGY | 7 cut(s) | 990, 1067, 1481, 1843, 2183, 2588, 2755 |
| XmiI | GTMKAC | 4 cut(s) | 429, 657, 2905, 2940 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2814 |
| ZrmI | AGTACT | 1 cut(s) | 1593 |
| Zsp2I | ATGCAT | 1 cut(s) | 1521 |