disease resistance
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Rx_N | PF18052 | 38 - 101 | 1e-15 | Rx N-terminal domain |
| NB-ARC | PF00931 | 174 - 347 | 8.2e-41 | NB-ARC domain |
| WHD_DRP | PF23559 | 430 - 498 | 7.5e-26 | Disease resistance protein Winged helix domain |
| LRR_14 | PF23598 | 578 - 840 | 4.1e-28 | Leucine-rich repeat region |
| LRR_R13L1-DRL21 | PF25019 | 690 - 812 | 5.9e-32 | R13L1/DRL21 LRRs |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 354, 858 |
| AatII | GACGTC | 1 cut(s) | 2954 |
| Acc36I | ACCTGC | 1 cut(s) | 2413 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2393 |
| AccI | GTMKAC | 4 cut(s) | 874, 934, 2008, 2786 |
| AccII | CGCG | 2 cut(s) | 1423, 2714 |
| AccIII | TCCGGA | 1 cut(s) | 65 |
| AclWI | GGATC | 6 cut(s) | 1203, 1458, 1536, 1689, 3407, 3426 |
| AcoI | YGGCCR | 1 cut(s) | 3006 |
| AcuI | CTGAAG | 5 cut(s) | 288, 2642, 2792, 3008, 3662 |
| AcyI | GRCGYC | 1 cut(s) | 2951 |
| AfaI | GTAC | 5 cut(s) | 502, 1642, 1782, 1867, 2468 |
| AflII | CTTAAG | 1 cut(s) | 1138 |
| AflIII | ACRYGT | 1 cut(s) | 937 |
| AjiI | CACGTC | 1 cut(s) | 938 |
| AjnI | CCWGG | 2 cut(s) | 309, 3180 |
| AleI | CACNNNNGTG | 1 cut(s) | 1093 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 2702, 2734, 3435, 3467 |
| Alw21I | GWGCWC | 6 cut(s) | 159, 219, 957, 2241, 2421, 3528 |
| Alw26I | GTCTC | 8 cut(s) | 1139, 2316, 2360, 2771, 2786, 3214, 3422, 3575 |
| Alw44I | GTGCAC | 1 cut(s) | 953 |
| AlwI | GGATC | 6 cut(s) | 1203, 1458, 1536, 1689, 3407, 3426 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2364 |
| Ama87I | CYCGRG | 1 cut(s) | 2761 |
| Aor13HI | TCCGGA | 1 cut(s) | 65 |
| AoxI | GGCC | 3 cut(s) | 285, 2694, 3006 |
| ApaLI | GTGCAC | 1 cut(s) | 953 |
| ApeKI | GCWGC | 6 cut(s) | 547, 1115, 2539, 2797, 3448, 3561 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1292, 1324, 3338, 3370 |
| AseI | ATTAAT | 1 cut(s) | 3189 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 2107, 2247 |
| AspLEI | GCGC | 1 cut(s) | 1815 |
| AspS9I | GGNCC | 2 cut(s) | 2694, 3292 |
| AsuC2I | CCSGG | 3 cut(s) | 89, 2762, 2763 |
| AsuHPI | GGTGA | 8 cut(s) | 142, 1406, 2281, 2570, 3008, 3301, 3458, 3715 |
| AvaI | CYCGRG | 1 cut(s) | 2761 |
| AvaII | GGWCC | 1 cut(s) | 3292 |
| BaeGI | GKGCMC | 1 cut(s) | 957 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1764, 1797 |
| BalI | TGGCCA | 1 cut(s) | 3008 |
| BanII | GRGCYC | 2 cut(s) | 219, 2421 |
| BbsI | GAAGAC | 3 cut(s) | 103, 2630, 2870 |
| Bbv12I | GWGCWC | 6 cut(s) | 159, 219, 957, 2241, 2421, 3528 |
| BbvCI | CCTCAGC | 2 cut(s) | 806, 2591 |
| BbvI | GCAGC | 6 cut(s) | 534, 1102, 2551, 2784, 3435, 3548 |
| BccI | CCATC | 8 cut(s) | 509, 1333, 2288, 2809, 2998, 3177, 3477, 3734 |
| BceAI | ACGGC | 2 cut(s) | 179, 2485 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 41, 75 |
| BciT130I | CCWGG | 2 cut(s) | 311, 3182 |
| BcnI | CCSGG | 3 cut(s) | 89, 2762, 2763 |
| BcoDI | GTCTC | 8 cut(s) | 1139, 2316, 2360, 2771, 2786, 3214, 3422, 3575 |
| BfaI | CTAG | 9 cut(s) | 209, 1016, 1112, 1127, 1151, 1619, 1709, 2780, 3548 |
| BfmI | CTRYAG | 3 cut(s) | 582, 591, 1926 |
| BfrI | CTTAAG | 1 cut(s) | 1138 |
| BfuAI | ACCTGC | 1 cut(s) | 2413 |
| BglII | AGATCT | 1 cut(s) | 2170 |
| BisI | GCNGC | 7 cut(s) | 548, 1116, 2540, 2798, 2852, 3449, 3562 |
| BlsI | GCNGC | 7 cut(s) | 549, 1117, 2541, 2799, 2853, 3450, 3563 |
| Bme1390I | CCNGG | 5 cut(s) | 89, 311, 2762, 2763, 3182 |
| Bme18I | GGWCC | 1 cut(s) | 3292 |
| BmeT110I | CYCGRG | 1 cut(s) | 2761 |
| BmgBI | CACGTC | 1 cut(s) | 938 |
| BmgT120I | GGNCC | 2 cut(s) | 2694, 3292 |
| BmrFI | CCNGG | 5 cut(s) | 89, 311, 2762, 2763, 3182 |
| BpiI | GAAGAC | 3 cut(s) | 103, 2630, 2870 |
| BpmI | CTGGAG | 3 cut(s) | 146, 1527, 2177 |
| Bpu10I | CCTNAGC | 2 cut(s) | 806, 2591 |
| BpuEI | CTTGAG | 2 cut(s) | 2603, 3542 |
| BpuMI | CCSGG | 3 cut(s) | 89, 2762, 2763 |
| BsaAI | YACGTR | 4 cut(s) | 891, 1091, 1780, 2425 |
| BsaBI | GATNNNNATC | 1 cut(s) | 3159 |
| BsaHI | GRCGYC | 1 cut(s) | 2951 |
| BsaI | GGTCTC | 2 cut(s) | 1139, 2771 |
| BsaJI | CCNNGG | 5 cut(s) | 240, 424, 2095, 2761, 3180 |
| BsaWI | WCCGGW | 2 cut(s) | 29, 65 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 119, 149, 922, 952, 2579, 2609, 3435, 3465 |
| Bse118I | RCCGGY | 1 cut(s) | 3598 |
| Bse1I | ACTGG | 3 cut(s) | 129, 2390, 2697 |
| Bse3DI | GCAATG | 3 cut(s) | 457, 2067, 2381 |
| Bse8I | GATNNNNATC | 1 cut(s) | 3159 |
| BseAI | TCCGGA | 1 cut(s) | 65 |
| BseBI | CCWGG | 2 cut(s) | 311, 3182 |
| BseDI | CCNNGG | 5 cut(s) | 240, 424, 2095, 2761, 3180 |
| BseJI | GATNNNNATC | 1 cut(s) | 3159 |
| BseMI | GCAATG | 3 cut(s) | 457, 2067, 2381 |
| BseMII | CTCAG | 7 cut(s) | 797, 2371, 2582, 2606, 3050, 3178, 3608 |
| BseNI | ACTGG | 3 cut(s) | 129, 2390, 2697 |
| BseRI | GAGGAG | 5 cut(s) | 185, 450, 1400, 2600, 3162 |
| BseSI | GKGCMC | 1 cut(s) | 957 |
| BseXI | GCAGC | 6 cut(s) | 534, 1102, 2551, 2784, 3435, 3548 |
| Bsh1236I | CGCG | 2 cut(s) | 1423, 2714 |
| BshFI | GGCC | 3 cut(s) | 287, 2696, 3008 |
| BsiHKAI | GWGCWC | 6 cut(s) | 159, 219, 957, 2241, 2421, 3528 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2761 |
| BsiSI | CCGG | 6 cut(s) | 30, 66, 88, 2762, 3290, 3599 |
| BslFI | GGGAC | 3 cut(s) | 332, 572, 3531 |
| BsmAI | GTCTC | 8 cut(s) | 1139, 2316, 2360, 2771, 2786, 3214, 3422, 3575 |
| BsmBI | CGTCTC | 3 cut(s) | 2360, 2786, 3422 |
| BsmFI | GGGAC | 3 cut(s) | 332, 572, 3531 |
| BsmI | GAATGC | 1 cut(s) | 3693 |
| BsnI | GGCC | 3 cut(s) | 287, 2696, 3008 |
| Bso31I | GGTCTC | 2 cut(s) | 1139, 2771 |
| BsoBI | CYCGRG | 1 cut(s) | 2761 |
| Bsp1286I | GDGCHC | 6 cut(s) | 159, 219, 957, 2241, 2421, 3528 |
| Bsp13I | TCCGGA | 1 cut(s) | 65 |
| BspANI | GGCC | 3 cut(s) | 287, 2696, 3008 |
| BspCNI | CTCAG | 7 cut(s) | 798, 2370, 2583, 2607, 3051, 3177, 3609 |
| BspEI | TCCGGA | 1 cut(s) | 65 |
| BspFNI | CGCG | 2 cut(s) | 1423, 2714 |
| BspHI | TCATGA | 1 cut(s) | 1684 |
| BspMAI | CTGCAG | 1 cut(s) | 1930 |
| BspMI | ACCTGC | 1 cut(s) | 2413 |
| BspPI | GGATC | 6 cut(s) | 1203, 1458, 1536, 1689, 3407, 3426 |
| BspTI | CTTAAG | 1 cut(s) | 1138 |
| BspTNI | GGTCTC | 2 cut(s) | 1139, 2771 |
| BsrDI | GCAATG | 3 cut(s) | 457, 2067, 2381 |
| BsrFI | RCCGGY | 1 cut(s) | 3598 |
| BsrI | ACTGG | 3 cut(s) | 129, 2390, 2697 |
| BssAI | RCCGGY | 1 cut(s) | 3598 |
| BssECI | CCNNGG | 5 cut(s) | 240, 424, 2095, 2761, 3180 |
| BssNI | GRCGYC | 1 cut(s) | 2951 |
| BssT1I | CCWWGG | 1 cut(s) | 2095 |
| Bst2UI | CCWGG | 2 cut(s) | 311, 3182 |
| Bst4CI | ACNGT | 8 cut(s) | 72, 702, 1103, 1416, 1676, 1861, 2366, 3269 |
| Bst6I | CTCTTC | 2 cut(s) | 3468, 3543 |
| BstACI | GRCGYC | 1 cut(s) | 2951 |
| BstAFI | CTTAAG | 1 cut(s) | 1138 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 1025, 2860, 3699 |
| BstBAI | YACGTR | 4 cut(s) | 891, 1091, 1780, 2425 |
| BstC8I | GCNNGC | 5 cut(s) | 1206, 1926, 3299, 3600, 3691 |
| BstEII | GGTNACC | 2 cut(s) | 1796, 1848 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 508, 734 |
| BstFNI | CGCG | 2 cut(s) | 1423, 2714 |
| BstHHI | GCGC | 1 cut(s) | 1815 |
| BstMAI | GTCTC | 8 cut(s) | 1139, 2316, 2360, 2771, 2786, 3214, 3422, 3575 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 214, 1025, 1661, 2147, 2803, 2812, 2860, 2944, 3699 |
| BstNI | CCWGG | 2 cut(s) | 311, 3182 |
| BstNSI | RCATGY | 6 cut(s) | 227, 1028, 1208, 2629, 2673, 3301 |
| BstPI | GGTNACC | 2 cut(s) | 1796, 1848 |
| BstSCI | CCNGG | 5 cut(s) | 87, 309, 2760, 2761, 3180 |
| BstSFI | CTRYAG | 3 cut(s) | 582, 591, 1926 |
| BstSLI | GKGCMC | 1 cut(s) | 957 |
| BstSNI | TACGTA | 1 cut(s) | 2425 |
| BstUI | CGCG | 2 cut(s) | 1423, 2714 |
| BstV1I | GCAGC | 6 cut(s) | 534, 1102, 2551, 2784, 3435, 3548 |
| BstV2I | GAAGAC | 3 cut(s) | 103, 2630, 2870 |
| BstX2I | RGATCY | 3 cut(s) | 1195, 2170, 3418 |
| BstYI | RGATCY | 3 cut(s) | 1195, 2170, 3418 |
| BsuRI | GGCC | 3 cut(s) | 287, 2696, 3008 |
| BtgZI | GCGATG | 1 cut(s) | 2787 |
| BtrI | CACGTC | 1 cut(s) | 938 |
| BtsI | GCAGTG | 1 cut(s) | 159 |
| BtsIMutI | CAGTG | 4 cut(s) | 159, 1866, 2027, 2365 |
| BveI | ACCTGC | 1 cut(s) | 2413 |
| Cac8I | GCNNGC | 5 cut(s) | 1206, 1926, 3299, 3600, 3691 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2364 |
| CciI | TCATGA | 1 cut(s) | 1684 |
| CfoI | GCGC | 1 cut(s) | 1815 |
| Cfr10I | RCCGGY | 1 cut(s) | 3598 |
| Cfr13I | GGNCC | 2 cut(s) | 2694, 3292 |
| Cfr9I | CCCGGG | 1 cut(s) | 2761 |
| CpoI | CGGWCCG | 1 cut(s) | 3292 |
| CseI | GACGC | 6 cut(s) | 266, 860, 1644, 1943, 2342, 2803 |
| Csp6I | GTAC | 5 cut(s) | 501, 1641, 1781, 1866, 2467 |
| CspI | CGGWCCG | 1 cut(s) | 3292 |
| CviQI | GTAC | 5 cut(s) | 501, 1641, 1781, 1866, 2467 |
| EaeI | YGGCCR | 1 cut(s) | 3006 |
| Eam1104I | CTCTTC | 2 cut(s) | 3468, 3543 |
| EarI | CTCTTC | 2 cut(s) | 3468, 3543 |
| EciI | GGCGGA | 2 cut(s) | 2310, 2487 |
| Ecl136II | GAGCTC | 2 cut(s) | 217, 2419 |
| Eco105I | TACGTA | 1 cut(s) | 2425 |
| Eco130I | CCWWGG | 1 cut(s) | 2095 |
| Eco24I | GRGCYC | 2 cut(s) | 219, 2421 |
| Eco31I | GGTCTC | 2 cut(s) | 1139, 2771 |
| Eco47I | GGWCC | 1 cut(s) | 3292 |
| Eco53kI | GAGCTC | 2 cut(s) | 217, 2419 |
| Eco57I | CTGAAG | 5 cut(s) | 288, 2642, 2792, 3008, 3662 |
| Eco88I | CYCGRG | 1 cut(s) | 2761 |
| Eco91I | GGTNACC | 2 cut(s) | 1796, 1848 |
| EcoICRI | GAGCTC | 2 cut(s) | 217, 2419 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 508, 734 |
| EcoO65I | GGTNACC | 2 cut(s) | 1796, 1848 |
| EcoRI | GAATTC | 4 cut(s) | 775, 879, 2984, 3575 |
| EcoRII | CCWGG | 2 cut(s) | 309, 3180 |
| EcoT14I | CCWWGG | 1 cut(s) | 2095 |
| EcoT22I | ATGCAT | 2 cut(s) | 1030, 1473 |
| EcoT38I | GRGCYC | 2 cut(s) | 219, 2421 |
| ErhI | CCWWGG | 1 cut(s) | 2095 |
| Esp3I | CGTCTC | 3 cut(s) | 2360, 2786, 3422 |
| FaqI | GGGAC | 3 cut(s) | 332, 572, 3531 |
| FauI | CCCGC | 2 cut(s) | 309, 599 |
| FauNDI | CATATG | 2 cut(s) | 2001, 3731 |
| FblI | GTMKAC | 4 cut(s) | 874, 934, 2008, 2786 |
| Fnu4HI | GCNGC | 7 cut(s) | 548, 1116, 2540, 2798, 2852, 3449, 3562 |
| FriOI | GRGCYC | 2 cut(s) | 219, 2421 |
| Fsp4HI | GCNGC | 7 cut(s) | 548, 1116, 2540, 2798, 2852, 3449, 3562 |
| FspBI | CTAG | 9 cut(s) | 209, 1016, 1112, 1127, 1151, 1619, 1709, 2780, 3548 |
| GlaI | GCGC | 1 cut(s) | 1814 |
| GluI | GCNGC | 7 cut(s) | 548, 1116, 2540, 2798, 2852, 3449, 3562 |
| GsuI | CTGGAG | 3 cut(s) | 146, 1527, 2177 |
| HaeIII | GGCC | 3 cut(s) | 287, 2696, 3008 |
| HapII | CCGG | 6 cut(s) | 30, 66, 88, 2762, 3290, 3599 |
| HgaI | GACGC | 6 cut(s) | 266, 860, 1644, 1943, 2342, 2803 |
| HhaI | GCGC | 1 cut(s) | 1815 |
| Hin1I | GRCGYC | 1 cut(s) | 2951 |
| Hin6I | GCGC | 1 cut(s) | 1813 |
| HinP1I | GCGC | 1 cut(s) | 1813 |
| HincII | GTYRAC | 2 cut(s) | 187, 2787 |
| HindII | GTYRAC | 2 cut(s) | 187, 2787 |
| HpaII | CCGG | 6 cut(s) | 30, 66, 88, 2762, 3290, 3599 |
| HphI | GGTGA | 8 cut(s) | 142, 1406, 2281, 2570, 3008, 3301, 3458, 3715 |
| Hpy166II | GTNNAC | 7 cut(s) | 187, 875, 935, 955, 1866, 2009, 2787 |
| Hpy8I | GTNNAC | 7 cut(s) | 187, 875, 935, 955, 1866, 2009, 2787 |
| Hpy99I | CGWCG | 5 cut(s) | 200, 282, 2791, 3224, 3407 |
| HpyCH4III | ACNGT | 8 cut(s) | 72, 702, 1103, 1416, 1676, 1861, 2366, 3269 |
| HpyCH4IV | ACGT | 8 cut(s) | 134, 890, 937, 1090, 1779, 2424, 2951, 3431 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 214, 1025, 1661, 2147, 2803, 2812, 2860, 2944, 3699 |
| HpySE526I | ACGT | 8 cut(s) | 134, 890, 937, 1090, 1779, 2424, 2951, 3431 |
| Hsp92I | GRCGYC | 1 cut(s) | 2951 |
| HspAI | GCGC | 1 cut(s) | 1813 |
| Kpn2I | TCCGGA | 1 cut(s) | 65 |
| KroI | GCCGGC | 1 cut(s) | 3598 |
| KroNI | GCCGGC | 1 cut(s) | 3600 |
| LmnI | GCTCC | 5 cut(s) | 868, 2587, 2820, 3149, 3456 |
| Lsp1109I | GCAGC | 6 cut(s) | 534, 1102, 2551, 2784, 3435, 3548 |
| MaeI | CTAG | 9 cut(s) | 209, 1016, 1112, 1127, 1151, 1619, 1709, 2780, 3548 |
| MaeII | ACGT | 8 cut(s) | 134, 890, 937, 1090, 1779, 2424, 2951, 3431 |
| MflI | RGATCY | 3 cut(s) | 1195, 2170, 3418 |
| MhlI | GDGCHC | 6 cut(s) | 159, 219, 957, 2241, 2421, 3528 |
| MlsI | TGGCCA | 1 cut(s) | 3008 |
| MluNI | TGGCCA | 1 cut(s) | 3008 |
| MlyI | GAGTC | 6 cut(s) | 93, 1635, 2318, 2792, 3043, 3577 |
| MmeI | TCCRAC | 7 cut(s) | 375, 577, 1277, 1506, 2361, 3066, 3385 |
| Mox20I | TGGCCA | 1 cut(s) | 3008 |
| Mph1103I | ATGCAT | 2 cut(s) | 1030, 1473 |
| MroI | TCCGGA | 1 cut(s) | 65 |
| MroNI | GCCGGC | 1 cut(s) | 3598 |
| MroXI | GAANNNNTTC | 2 cut(s) | 2107, 2247 |
| MscI | TGGCCA | 1 cut(s) | 3008 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1093, 1689, 2488 |
| Msp20I | TGGCCA | 1 cut(s) | 3008 |
| MspA1I | CMGCKG | 3 cut(s) | 805, 3048, 3448 |
| MspCI | CTTAAG | 1 cut(s) | 1138 |
| MspI | CCGG | 6 cut(s) | 30, 66, 88, 2762, 3290, 3599 |
| MspR9I | CCNGG | 5 cut(s) | 89, 311, 2762, 2763, 3182 |
| Mva1269I | GAATGC | 1 cut(s) | 3693 |
| MvaI | CCWGG | 2 cut(s) | 311, 3182 |
| MvnI | CGCG | 2 cut(s) | 1423, 2714 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 214, 1025, 1661, 2147, 2803, 2812, 2860, 2944, 3699 |
| NaeI | GCCGGC | 1 cut(s) | 3600 |
| NciI | CCSGG | 3 cut(s) | 89, 2762, 2763 |
| NdeI | CATATG | 2 cut(s) | 2001, 3731 |
| NgoMIV | GCCGGC | 1 cut(s) | 3598 |
| NmeAIII | GCCGAG | 1 cut(s) | 265 |
| NmuCI | GTSAC | 6 cut(s) | 130, 758, 1425, 2360, 2952, 3269 |
| NsiI | ATGCAT | 2 cut(s) | 1030, 1473 |
| NspI | RCATGY | 6 cut(s) | 227, 1028, 1208, 2629, 2673, 3301 |
| OliI | CACNNNNGTG | 1 cut(s) | 1093 |
| PaeI | GCATGC | 2 cut(s) | 1208, 3301 |
| PagI | TCATGA | 1 cut(s) | 1684 |
| PctI | GAATGC | 1 cut(s) | 3693 |
| PdiI | GCCGGC | 1 cut(s) | 3600 |
| PdmI | GAANNNNTTC | 2 cut(s) | 2107, 2247 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2393 |
| PkrI | GCNGC | 7 cut(s) | 549, 1117, 2541, 2799, 2853, 3450, 3563 |
| PleI | GAGTC | 6 cut(s) | 93, 1634, 2318, 2791, 3042, 3576 |
| PpsI | GAGTC | 6 cut(s) | 93, 1634, 2318, 2791, 3042, 3576 |
| Ppu21I | YACGTR | 4 cut(s) | 891, 1091, 1780, 2425 |
| PshBI | ATTAAT | 1 cut(s) | 3189 |
| PsiI | TTATAA | 2 cut(s) | 354, 858 |
| Psp124BI | GAGCTC | 2 cut(s) | 219, 2421 |
| Psp6I | CCWGG | 2 cut(s) | 309, 3180 |
| PspEI | GGTNACC | 2 cut(s) | 1796, 1848 |
| PspGI | CCWGG | 2 cut(s) | 309, 3180 |
| PspPI | GGNCC | 2 cut(s) | 2694, 3292 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 2362, 2394 |
| PstI | CTGCAG | 1 cut(s) | 1930 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2364 |
| PsuI | RGATCY | 3 cut(s) | 1195, 2170, 3418 |
| PvuII | CAGCTG | 3 cut(s) | 805, 3048, 3448 |
| RsaI | GTAC | 5 cut(s) | 502, 1642, 1782, 1867, 2468 |
| RsaNI | GTAC | 5 cut(s) | 501, 1641, 1781, 1866, 2467 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1093, 1689, 2488 |
| Rsr2I | CGGWCCG | 1 cut(s) | 3292 |
| RsrII | CGGWCCG | 1 cut(s) | 3292 |
| SacI | GAGCTC | 2 cut(s) | 219, 2421 |
| SalI | GTCGAC | 1 cut(s) | 2785 |
| SatI | GCNGC | 7 cut(s) | 548, 1116, 2540, 2798, 2852, 3449, 3562 |
| Sau96I | GGNCC | 2 cut(s) | 2694, 3292 |
| SchI | GAGTC | 6 cut(s) | 93, 1635, 2318, 2792, 3043, 3577 |
| ScrFI | CCNGG | 5 cut(s) | 89, 311, 2762, 2763, 3182 |
| SduI | GDGCHC | 6 cut(s) | 159, 219, 957, 2241, 2421, 3528 |
| SfcI | CTRYAG | 3 cut(s) | 582, 591, 1926 |
| SinI | GGWCC | 1 cut(s) | 3292 |
| SmaI | CCCGGG | 1 cut(s) | 2763 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1093, 1689, 2488 |
| SmlI | CTYRAG | 3 cut(s) | 1138, 2582, 3521 |
| SmoI | CTYRAG | 3 cut(s) | 1138, 2582, 3521 |
| SnaBI | TACGTA | 1 cut(s) | 2425 |
| SphI | GCATGC | 2 cut(s) | 1208, 3301 |
| SspI | AATATT | 1 cut(s) | 1736 |
| SspMI | CTAG | 9 cut(s) | 209, 1016, 1112, 1127, 1151, 1619, 1709, 2780, 3548 |
| SstI | GAGCTC | 2 cut(s) | 219, 2421 |
| StyD4I | CCNGG | 5 cut(s) | 87, 309, 2760, 2761, 3180 |
| StyI | CCWWGG | 1 cut(s) | 2095 |
| TaaI | ACNGT | 8 cut(s) | 72, 702, 1103, 1416, 1676, 1861, 2366, 3269 |
| TaiI | ACGT | 8 cut(s) | 137, 893, 940, 1093, 1782, 2427, 2954, 3434 |
| TaqI | TCGA | 8 cut(s) | 35, 102, 234, 2241, 2786, 3474, 3573, 3624 |
| TaqII | GACCGA | 1 cut(s) | 416 |
| TauI | GCSGC | 1 cut(s) | 2854 |
| TscAI | CASTG | 4 cut(s) | 159, 1866, 2034, 2365 |
| TseFI | GTSAC | 6 cut(s) | 130, 758, 1425, 2360, 2952, 3269 |
| TseI | GCWGC | 6 cut(s) | 547, 1115, 2539, 2797, 3448, 3561 |
| Tsp45I | GTSAC | 6 cut(s) | 130, 758, 1425, 2360, 2952, 3269 |
| TspGWI | ACGGA | 4 cut(s) | 2209, 2804, 2807, 3525 |
| TspMI | CCCGGG | 1 cut(s) | 2761 |
| TspRI | CASTG | 4 cut(s) | 159, 1866, 2034, 2365 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2393 |
| Vha464I | CTTAAG | 1 cut(s) | 1138 |
| VneI | GTGCAC | 1 cut(s) | 953 |
| VpaK11BI | GGWCC | 1 cut(s) | 3292 |
| VspI | ATTAAT | 1 cut(s) | 3189 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 508, 734 |
| XbaI | TCTAGA | 1 cut(s) | 1708 |
| XceI | RCATGY | 6 cut(s) | 227, 1028, 1208, 2629, 2673, 3301 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1674 |
| XmaI | CCCGGG | 1 cut(s) | 2761 |
| XmiI | GTMKAC | 4 cut(s) | 874, 934, 2008, 2786 |
| XmnI | GAANNNNTTC | 2 cut(s) | 2107, 2247 |
| XspI | CTAG | 9 cut(s) | 209, 1016, 1112, 1127, 1151, 1619, 1709, 2780, 3548 |
| ZraI | GACGTC | 1 cut(s) | 2952 |
| Zsp2I | ATGCAT | 2 cut(s) | 1030, 1473 |