Rw5G024660

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Reverse (-)
35013592 .. 35016855
3264 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G024660.1

Sequence Viewer

Length: 3264 bp
ATGGCTCTGGAAGTTGTGGGTGGAGCTTTTCTCTGTTCTTCTCTTGCTGTTCTGTTTGATAGGATGGCTTCCCGTCCAGTTGTTGACTTCATCCGAGGAAAGAAGACCGCCGCTGTGCTGCTCCAGAAGTTGAAGATGAAGTTGTTGTCGGTTAATAAGTTGCTTGATGATGCAGAGGAGAAGCAACTCAGAAACTCTAGAGTCAGGGATTGGCTTAATGAGCTTAAAGATGTTCTCTATCATGCCGATGACCTTTTGGATGAAATCAAGACTGAAGCTCTGCGTTGCAAGATGGAAGGAGAGGATTCTGGAAGCAGCCGCACAAATCAGGTACTGGAGTTTAGTTCTATTTCCATTCATGAACTTGACAAAAGTCTGGAACCCAGGATACTGGACATTCTTGACAGATTAGAACTTATTGTCAACGAAAAAGATGTGCTTGATTTGAAAGAGGGTGTTAAAGATAGACCACAAGGAAGACTGCCCACAACTTCTTTGGTAGAAGAGTCTAGTGTATATGGAAGGGATGAAGAAAAGGAGGCCATTATCAAGTTATTATTAGCGGATGGTGTGACTGGAAATAAGATAGATGTGCTTCCAATTGTGGGCATGGGTGGGCTTGGAAAGACCACTCTTGCTCAACTCGTATACAACGATGACAGAGTCAAGCAACATTTTGTCCATCAATCATGGTCTTGTGTTTCAGTAGAATTTGATGTTATCAAAATAACAGAGACACTTTATGGGGCGGTCACTTCACAAACTTGTAATATCACAGACCTAAACATGCTTCAAGTTAAACTAAAGGAGACGTTGTCAGGGAAGAAATTTCTCTTTGTTCTTGATGATGTTTGGACTGTGACTAATGACGAGTGGGATCTCTTAAGCCGACCCTTTGAGAGTGGAGGTCATGGAAGTAAGATCATTGTCACAACACGTCATGAAGATGTTGCAGGCATTATAGGTACCCTTCAAAGTCAACATCTAATGCAACTATCTGAGGAAAACTGCTGGTCGTTGTTCTCAAAACATGCCTTCAAGAATGGAGGTGTTACTGCAGATCTGTCGCTTGAAGTGATTGGAAAACAGATTGCTCAAAAGTGTAAAGGACTCCCTTTAGCTGCAAAATCACTTGGGGGTCTTTTGCGTTCTGAACCAAATATTGAGAAATGGGAAGAAGTGTTGAACAATGACATATGGGAGTTGCTAGATAAAAAGAATGGCATTTTGCCAGCTCTATGGTTGAGCTACCATTATCTACCTCCGAATCTGAAGCGTTGTTTTGCTTACTGTTCCATATTTCCTCAAGATTATCAGTTTCACAAACCGGATCTGGTGTTGCTGTGGATGGCTGAAGATCTCTTACCGTCGAAATCGAAGACTACATTAGAACAAGTCGGAGAGAACTACTTTGATGATCTAGTGTCAAGGTCATTTTTTCAACATGTACCTAATCACTTTTCTGGTGAGGCAGTTTTCACAATGCATGACCTTATCCATGACTTAGCAAACTTTGTCTCTGGAGAGTTCTGTGTTAGGTTGGAGAACAATGATGAGGTGTTGGAAAATGTCAGCAAGAGTCGCCACTTTTGGTGTATAAATGCATCTGCCGCAATTGATCAATGGGACAGTTTGTGTGAAGCCAAGTATTTGCGAACCTTTCTAGTATCAAAATATCATCAGTACGTACGTCCCAACTTAGATTTTGATATATTCCTGAAGCTTCAGTGTTTAAGAGTGCTCAATTTATCAAGGTACAAAATTGGTGAGCTGCCTAGTGCTCAATTTAGCAAGTTGAAGCATCTAAGGCACTTTGACTTGTCTCACACATCAATTAAAAAGTTACCTGATGAAATGTGTACTTTATATAATTTACAGACGTTGTTGTTGTTCTGTTGTAAATCCCTAGTTGAGTTGCCAACTGATTTGGGAAGATTAATCAACTTGCGTCATCTTGATATTAGATGGACAAAGATAGTAAAGATGCCACCAAGGATGGGCAAAATGAAAGATCTCCAAACAATAAGAGGTAATTTTGTCCTAGACAAATACACTGGTGGTAACATTGTGGAGATTAAAGAGCTTCAGCAGTTGCGCGGAACACTATGCATCTCGGGGCTTCGCAATATTGCGCGTGTCACAGATGCCTTGGAGACCAATATCAGGAAGAAGAAGTATTTGGATGAATTAGTTTTGGAATGGGGAGGCAAGTCTGGTGACACCGACGATACGCAAAAAGATAGAGATGTGCTGGAGAACCTCCAACCTCATACGAACCTAAAAAAACTCGAGATTCGATCTTATGGCGGCACAAGATTTCCAGGTTGGTTGGAAGATCATTCTAGTTTATCTAATCTGGTTCATCTTCGACTTCTGGATTGCGGAAATTGTTTGTCCTTGCCATCAGTTGAGCAGCAACCCTCCCTACAAGAGCTTGAGATTGAAGGATTTAATGGAGTGGTGACTGTGGGTTCTAAGCCTTTTCCTAATCTACGTGAGCTTCGTCTGAAATCTTGTCCCGAGGTAACCGGGGCATTCATGTTAGCCTGCTTCCCAAAGCTTGAAAGCCTCGCTTTGGTGGATGTGAATGTAGAATCTCTTCATTCCACTACAGTACTCCTCTCCCTTGTCAAACTCAGAATATCTTCATGCCCAAATTTTGTTTGTTTTCAAGATGGAGGGTTGAATACATGCACAACCTTCTCCCATAACAGTCGAGAAATGTCCGCAACAGTCGAGAAATGTCCGCAACACATGCACAACCTTCTCCCATCTCTCAGGCACTTGGTCATACGTGATTGTCCAGAATTGGAATCATTTCCCGAAGGGGCATTGCCGTCTAAGTTGGAACACTTGGAGATCTGGCGATGCAAGAAACTCGTCATTGGAAACCGTATGCAGTGGGGTCTACCAACACTCACCTCTCTCAAAATCTTGAGCGTCGACTTTGAGGGATGTGAACAAGTTGTAGATTCATTTCCAGACGGGGGGCTGCTGCCCACCACTCTCTCAGGACTCGAGATCCACGGTATTTCGAAGCTGGACGGCAAGGGGTTTACACAACTCACCTCTCTTGAAGGGTTGCAAATTTTCAATTGCCCTGAACTCCGGAGCTTGCCAGATGAAGGGCTACCCACTTCCCTTTCTTTTCTGGAAATCCACGGTTGTCCTTTACTAGAACAACGCTGCCGGAGAGAGACAGGAGAAGATTGGCCCAAGATTGCTCACATCAAGACCATTTCTATCAATAACAAACGTATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

1087

Amino Acids

122.95

Weight (kDa)

6.02

Isoelectric Point (pI)

42.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 32 - 101 6.6e-18 Rx N-terminal domain
NB-ARC PF00931 177 - 348 6.7e-35 NB-ARC domain
WHD_DRP PF23559 433 - 503 1.3e-25 Disease resistance protein Winged helix domain
LRR_14 PF23598 574 - 869 6.9e-30 Leucine-rich repeat region
LRR_8 PF13855 578 - 630 2.6e-07 Leucine rich repeat
LRR_R13L1-DRL21 PF25019 689 - 816 1.5e-39 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000035)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G14470 AT3G14470
fragaria_vesca FvH4_1g01220 FvH4_1g01230 FvH4_3g24551 FvH4_3g24552 FvH4_4g29310 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_6g39860 FvH4_6g39861 FvH4_7g11380
malus_domestica MD00G1072900.v1.1 MD00G1073100.v1.1 MD00G1120600.v1.1 MD00G1120900.v1.1 MD00G1121000.v1.1 MD00G1121200.v1.1 MD00G1152300.v1.1 MD00G1203600.v1.1 MD00G1203700.v1.1 MD02G1250900.v1.1 MD02G1251900.v1.1 MD02G1252800.v1.1 MD02G1277100.v1.1 MD02G1277200.v1.1 MD02G1277400.v1.1 MD02G1286100.v1.1 MD02G1286200.v1.1 MD02G1286900.v1.1 MD03G1006200.v1.1 MD03G1015300.v1.1 MD03G1015500.v1.1 MD03G1015900.v1.1 MD03G1016000.v1.1 MD03G1024900.v1.1 MD03G1025000.v1.1 MD03G1025500.v1.1 MD03G1026000.v1.1 MD03G1026500.v1.1 MD03G1031800.v1.1 MD03G1072200.v1.1 MD07G1028000.v1.1 MD07G1028300.v1.1 MD07G1029400.v1.1 MD07G1029500.v1.1 MD07G1040300.v1.1 MD07G1044500.v1.1 MD07G1045100.v1.1 MD07G1045500.v1.1 MD07G1050700.v1.1 MD07G1050900.v1.1 MD07G1055800.v1.1 MD07G1056200.v1.1 MD07G1056600.v1.1 MD07G1057100.v1.1 MD07G1057200.v1.1 MD08G1056500.v1.1 MD08G1056600.v1.1 MD08G1056700.v1.1 MD08G1056800.v1.1 MD08G1128800.v1.1 MD08G1129500.v1.1 MD08G1130000.v1.1 MD11G1066700.v1.1 MD11G1066800.v1.1 MD11G1066900.v1.1 MD11G1067000.v1.1 MD11G1067500.v1.1 MD11G1069800.v1.1 MD11G1070400.v1.1 MD11G1071100.v1.1 MD11G1071200.v1.1 MD11G1077200.v1.1 MD11G1077700.v1.1 MD11G1077900.v1.1 MD11G1078100.v1.1 MD11G1078300.v1.1 MD11G1078500.v1.1 MD11G1135200.v1.1 MD11G1135400.v1.1 MD11G1152900.v1.1 MD11G1153000.v1.1 MD17G1056800.v1.1
prunus_persica Prupe.2G037800_v2.0.a1 Prupe.2G037800_v2.0.a1 Prupe.2G037800_v2.0.a1 Prupe.2G037800_v2.0.a1 Prupe.2G040500_v2.0.a1 Prupe.2G040700_v2.0.a1 Prupe.2G043000_v2.0.a1 Prupe.2G043100_v2.0.a1 Prupe.2G043200_v2.0.a1 Prupe.2G046000_v2.0.a1 Prupe.2G046300_v2.0.a1 Prupe.2G046400_v2.0.a1 Prupe.2G046400_v2.0.a1 Prupe.2G046700_v2.0.a1 Prupe.2G046900_v2.0.a1 Prupe.2G051100_v2.0.a1 Prupe.2G052200_v2.0.a1 Prupe.2G053600_v2.0.a1 Prupe.2G053600_v2.0.a1 Prupe.2G053600_v2.0.a1 Prupe.2G053600_v2.0.a1 Prupe.2G053700_v2.0.a1 Prupe.2G053800_v2.0.a1 Prupe.2G053900_v2.0.a1 Prupe.2G054000_v2.0.a1 Prupe.2G054100_v2.0.a1 Prupe.2G054200_v2.0.a1 Prupe.2G054300_v2.0.a1 Prupe.2G054300_v2.0.a1 Prupe.2G054300_v2.0.a1 Prupe.2G054300_v2.0.a1 Prupe.2G054500_v2.0.a1 Prupe.2G054700_v2.0.a1 Prupe.4G286000_v2.0.a1 Prupe.4G286000_v2.0.a1 Prupe.4G286000_v2.0.a1 Prupe.6G129800_v2.0.a1 Prupe.6G130000_v2.0.a1 Prupe.6G130000_v2.0.a1
pyrus_communis pycom02g23740 pycom02g23750 pycom02g24320 pycom03g00620 pycom03g01280 pycom03g01320 pycom03g01350 pycom03g01360 pycom03g01370 pycom03g01380 pycom03g01390 pycom03g02160 pycom03g02170 pycom03g05850 pycom03g09810 pycom07g02120 pycom07g02790 pycom07g02800 pycom07g03210 pycom07g03660 pycom07g03670 pycom07g04350 pycom08g10780 pycom08g10840 pycom08g10910 pycom11g05650 pycom11g05670 pycom11g05800 pycom11g05880 pycom11g05890 pycom11g05940 pycom11g06490 pycom11g06500 pycom11g06520 pycom11g06560 pycom11g06570 pycom11g11230 pycom11g13650 pycom17g05700
rosa_chinensis RchiOBHm_Chr1g0318341 RchiOBHm_Chr1g0318901 RchiOBHm_Chr1g0318931 RchiOBHm_Chr1g0327301 RchiOBHm_Chr1g0328491 RchiOBHm_Chr1g0336761 RchiOBHm_Chr1g0336831 RchiOBHm_Chr1g0340721 RchiOBHm_Chr1g0342461 RchiOBHm_Chr1g0342471 RchiOBHm_Chr1g0342481 RchiOBHm_Chr1g0346131 RchiOBHm_Chr1g0346191 RchiOBHm_Chr1g0346211 RchiOBHm_Chr1g0346241 RchiOBHm_Chr1g0346261 RchiOBHm_Chr1g0346281 RchiOBHm_Chr1g0346461 RchiOBHm_Chr1g0346471 RchiOBHm_Chr1g0346481 RchiOBHm_Chr1g0346501 RchiOBHm_Chr1g0347691 RchiOBHm_Chr1g0347701 RchiOBHm_Chr1g0347751 RchiOBHm_Chr1g0347791 RchiOBHm_Chr1g0347971 RchiOBHm_Chr1g0349661 RchiOBHm_Chr1g0349741 RchiOBHm_Chr1g0357561 RchiOBHm_Chr3g0492601 RchiOBHm_Chr5g0039181 RchiOBHm_Chr5g0039231 RchiOBHm_Chr5g0039241 RchiOBHm_Chr5g0039251 RchiOBHm_Chr5g0039531 RchiOBHm_Chr5g0044001 RchiOBHm_Chr5g0044571 RchiOBHm_Chr5g0044611 RchiOBHm_Chr5g0044631 RchiOBHm_Chr5g0044641 RchiOBHm_Chr5g0044651 RchiOBHm_Chr5g0044661 RchiOBHm_Chr5g0044681 RchiOBHm_Chr5g0045221 RchiOBHm_Chr5g0045901 RchiOBHm_Chr5g0045991 RchiOBHm_Chr5g0046001 RchiOBHm_Chr5g0046011
rosa_laevigata RLG00000028715 RLG00000028718 RLG00000029034 RLG00000029926 RLG00000030516 RLG00000034285 RLG00000034288
rosa_multiflora Rmu_co7987576.1_g000001 Rmu_co8028038.1_g000001 Rmu_co8104858.1_g000001 Rmu_co8185828.1_g000001 Rmu_co8227651.1_g000001 Rmu_co8235061.1_g000001 Rmu_co8246845.1_g000001 Rmu_co8254315.1_g000001 Rmu_co8284899.1_g000001 Rmu_co8401461.1_g000001 Rmu_co8475625.1_g000001 Rmu_co8502681.1_g000001 Rmu_sc0000250.1_g000005 Rmu_sc0000492.1_g000001 Rmu_sc0000533.1_g000004 Rmu_sc0000795.1_g000114 Rmu_sc0000831.1_g000039 Rmu_sc0000907.1_g000014 Rmu_sc0000907.1_g000034 Rmu_sc0001035.1_g000007 Rmu_sc0001035.1_g000011 Rmu_sc0001035.1_g000012 Rmu_sc0001099.1_g000003 Rmu_sc0001157.1_g000008 Rmu_sc0001212.1_g000016 Rmu_sc0001212.1_g000017 Rmu_sc0001304.1_g000027 Rmu_sc0001304.1_g000033 Rmu_sc0001773.1_g000019 Rmu_sc0001836.1_g000069 Rmu_sc0001856.1_g000004 Rmu_sc0002286.1_g000003 Rmu_sc0002286.1_g000004 Rmu_sc0002286.1_g000005 Rmu_sc0002286.1_g000007 Rmu_sc0002286.1_g000015 Rmu_sc0002495.1_g000025 Rmu_sc0002545.1_g000008 Rmu_sc0002545.1_g000009 Rmu_sc0002662.1_g000009 Rmu_sc0003363.1_g000019 Rmu_sc0003363.1_g000022 Rmu_sc0003600.1_g000057 Rmu_sc0003809.1_g000036 Rmu_sc0003809.1_g000037 Rmu_sc0005008.1_g000026 Rmu_sc0005008.1_g000028 Rmu_sc0005028.1_g000001 Rmu_sc0005144.1_g000022 Rmu_sc0005167.1_g000004 Rmu_sc0005626.1_g000005 Rmu_sc0005626.1_g000018 Rmu_sc0006228.1_g000011 Rmu_sc0006609.1_g000007 Rmu_sc0006609.1_g000009 Rmu_sc0006609.1_g000015 Rmu_sc0006609.1_g000016 Rmu_sc0006609.1_g000017 Rmu_sc0006609.1_g000018 Rmu_sc0007060.1_g000003 Rmu_sc0007318.1_g000011 Rmu_sc0007992.1_g000002 Rmu_sc0009172.1_g000001 Rmu_sc0010151.1_g000010 Rmu_sc0010151.1_g000011 Rmu_sc0011778.1_g000001 Rmu_sc0011778.1_g000005 Rmu_sc0011778.1_g000009 Rmu_sc0012293.1_g000001 Rmu_sc0012293.1_g000002 Rmu_sc0016606.1_g000001 Rmu_sc0016836.1_g000001 Rmu_sc0021084.1_g000008 Rmu_sc0021449.1_g000001 Rmu_sc0026523.1_g000001 Rmu_sc0027133.1_g000003 Rmu_sc0038674.1_g000001 Rmu_ssc0000255.1_g000053 Rmu_ssc0000255.1_g000063 Rmu_ssc0000255.1_g000064 Rmu_ssc0000263.1_g000004 Rmu_ssc0000400.1_g000027
rosa_roxburghii Rroxscaffold_1G00035290 Rroxscaffold_1G00036350 Rroxscaffold_1G00036360 Rroxscaffold_1G00036400 Rroxscaffold_1G00036460 Rroxscaffold_1G00037000 Rroxscaffold_1G00040440 Rroxscaffold_1G00041890 Rroxscaffold_1G00041920 Rroxscaffold_4G00307460 Rroxscaffold_4G00307500 Rroxscaffold_4G00308500 Rroxscaffold_4G00308510 Rroxscaffold_4G00308770 Rroxscaffold_4G00313020 Rroxscaffold_4G00321580 Rroxscaffold_4G00323030 Rroxscaffold_4G00326850 Rroxscaffold_4G00328770 Rroxscaffold_4G00328780 Rroxscaffold_4G00329310 Rroxscaffold_5G00352110
rosa_rugosa Rorug01G0020700 Rorug01G0023000 Rorug01G0023100 Rorug01G0023200 Rorug01G0023300 Rorug01G0023400 Rorug01G0024500 Rorug01G0025100 Rorug01G0025200 Rorug01G0025400 Rorug01G0025400 Rorug01G0064700 Rorug01G0065300 Rorug01G0127600 Rorug01G0128000 Rorug01G0148000.1 Rorug01G0150500.1 Rorug01G0161600.1 Rorug01G0161800.1 Rorug01G0163600.1 Rorug01G0178300 Rorug01G0178500 Rorug01G0178700 Rorug01G0179900 Rorug01G0180200 Rorug01G0180300 Rorug01G0180400 Rorug01G0189000 Rorug01G0189100 Rorug01G0190500 Rorug01G0204800 Rorug05G0177200 Rorug05G0210300 Rorug05G0210300 Rorug05G0210300 Rorug05G0215400 Rorug05G0215400 Rorug05G0215400 Rorug05G0215400 Rorug05G0215500 Rorug05G0215600 Rorug05G0215800 Rorug05G0215900 Rorug05G0215900 Rorug05G0216000 Rorug05G0216200 Rorug05G0216300 Rorug05G0221900 Rorug07G0276700
rosa_samantha Rh1BG028400 Rh1BG033500 Rh1BG065100 Rh1BG073100 Rh1BG073200 Rh1BG117000 Rh1BG164000 Rh1BG164200 Rh1BG172100 Rh1BG173900 Rh1BG174100 Rh1BG188400 Rh1CG036000 Rh1CG036500 Rh1CG089900 Rh1CG140200 Rh1CG164700 Rh1CG182600 Rh1CG182900 Rh1CG183400 Rh1CG191300 Rh1CG192000 Rh1CG207700 Rh1DG033800 Rh1DG033900 Rh1DG096000 Rh5AG299900 Rh5AG304500 Rh5AG307100 Rh5AG307500 Rh5CG301600 Rh5CG329800 Rh5CG333800 Rh5DG311400 Rh5DG316300 Rh5DG316400 Rh5DG316700 Rh5DG316800 Rh5DG316900 Rh5DG326100 Rh7AG431900 Rh7CG451000
rosa_wichuraiana Rw0G007840 Rw0G009850 Rw0G013000 Rw0G015090 Rw0G021190 Rw1G002610 Rw1G004320 Rw1G006520 Rw1G007250 Rw1G012020 Rw1G013830 Rw1G014770 Rw1G016300 Rw1G016600 Rw1G016650 Rw1G017290 Rw1G017420 Rw1G017630 Rw1G017650 Rw1G017660 Rw1G017690 Rw1G017700 Rw1G018960 Rw5G024660 Rw5G024700 Rw5G024720 Rw5G024740 Rw5G024980 Rw5G027710 Rw5G027720 Rw5G027730 Rw5G027740 Rw5G027750 Rw5G028130 Rw5G028740 Rw5G028750 Rw5G028790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 965
AccB1I GGYRCC 1 cut(s) 965
AccI GTMKAC 3 cut(s) 648, 2908, 2943
AccII CGCG 2 cut(s) 2097, 2134
AccIII TCCGGA 1 cut(s) 3108
AclWI GGATC 3 cut(s) 885, 1338, 3016
AcsI RAATTY 4 cut(s) 710, 827, 2656, 3087
AcuI CTGAAG 6 cut(s) 294, 1292, 1374, 1709, 1739, 2069
AfaI GTAC 8 cut(s) 333, 967, 1449, 1685, 1689, 1757, 1861, 2616
AfiI CCNNNNNNNGG 6 cut(s) 605, 1997, 2163, 2575, 2987, 3125
AflII CTTAAG 1 cut(s) 883
AflIII ACRYGT 2 cut(s) 935, 1444
AjiI CACGTC 1 cut(s) 938
AjnI CCWGG 2 cut(s) 383, 2320
AjuI GAANNNNNNNTTGG 2 cut(s) 2162, 2194
Alw21I GWGCWC 2 cut(s) 1743, 1783
Alw26I GTCTC 6 cut(s) 728, 803, 1522, 1827, 2147, 3191
AlwI GGATC 3 cut(s) 885, 1338, 3016
AlwNI CAGNNNCTG 1 cut(s) 334
Ama87I CYCGRG 4 cut(s) 2113, 2288, 2519, 3017
Aor13HI TCCGGA 1 cut(s) 3108
AoxI GGCC 2 cut(s) 540, 3212
ApeKI GCWGC 8 cut(s) 118, 315, 1121, 1771, 2413, 2992, 2995, 3186
ApoI RAATTY 4 cut(s) 710, 827, 2656, 3087
AseI ATTAAT 1 cut(s) 1937
Asp700I GAANNNNTTC 3 cut(s) 2598, 2644, 2817
Asp718I GGTACC 1 cut(s) 965
AspLEI GCGC 2 cut(s) 2097, 2134
AspS9I GGNCC 1 cut(s) 3213
AsuC2I CCSGG 1 cut(s) 2530
AsuHPI GGTGA 6 cut(s) 1478, 1778, 2228, 2473, 2911, 3058
AsuII TTCGAA 1 cut(s) 3035
AvaI CYCGRG 4 cut(s) 2113, 2288, 2519, 3017
BaeI ACNNNNGTAYC 2 cut(s) 323, 356
BanI GGYRCC 1 cut(s) 965
BarI GAAGNNNNNNTAC 4 cut(s) 1347, 1379, 2583, 2615
BbsI GAAGAC 3 cut(s) 110, 484, 1385
Bbv12I GWGCWC 2 cut(s) 1743, 1783
BbvI GCAGC 8 cut(s) 105, 327, 1108, 1758, 2425, 2979, 2982, 3173
BceAI ACGGC 2 cut(s) 2821, 3061
BcgI CGANNNNNNTGC 4 cut(s) 1047, 1081, 2860, 2894
BciT130I CCWGG 2 cut(s) 385, 2322
BciVI GTATCC 1 cut(s) 381
BclI TGATCA 1 cut(s) 1618
BcnI CCSGG 1 cut(s) 2530
BcoDI GTCTC 6 cut(s) 728, 803, 1522, 1827, 2147, 3191
BfmI CTRYAG 2 cut(s) 1056, 2610
BfrI CTTAAG 1 cut(s) 883
BfuI GTATCC 1 cut(s) 381
BglII AGATCT 4 cut(s) 1060, 1357, 2011, 2859
BmcAI AGTACT 1 cut(s) 2616
Bme1390I CCNGG 3 cut(s) 385, 2322, 2530
BmeT110I CYCGRG 4 cut(s) 2113, 2288, 2519, 3017
BmgBI CACGTC 1 cut(s) 938
BmgT120I GGNCC 1 cut(s) 3213
BmiI GGNNCC 2 cut(s) 381, 967
BmrFI CCNGG 3 cut(s) 385, 2322, 2530
BmsI GCATC 7 cut(s) 160, 1613, 1810, 1974, 2118, 2134, 2858
BoxI GACNNNNGTC 1 cut(s) 372
BpiI GAAGAC 3 cut(s) 110, 484, 1385
BplI GAGNNNNNCTC 2 cut(s) 15, 47
BpmI CTGGAG 4 cut(s) 107, 356, 1542, 2273
Bpu14I TTCGAA 1 cut(s) 3035
BpuEI CTTGAG 3 cut(s) 1290, 2456, 2956
BpuMI CCSGG 1 cut(s) 2530
BsaAI YACGTR 3 cut(s) 1687, 2495, 2795
BsaI GGTCTC 1 cut(s) 2147
BsaJI CCNNGG 8 cut(s) 94, 383, 1991, 2148, 2520, 2529, 3025, 3160
BsaWI WCCGGW 2 cut(s) 1327, 3108
BsaXI ACNNNNNCTCC 2 cut(s) 800, 830
Bsc4I CCNNNNNNNGG 6 cut(s) 605, 1997, 2163, 2575, 2987, 3125
Bse1I ACTGG 5 cut(s) 77, 339, 396, 580, 2059
Bse3DI GCAATG 1 cut(s) 2831
BseAI TCCGGA 1 cut(s) 3108
BseBI CCWGG 2 cut(s) 385, 2322
BseDI CCNNGG 8 cut(s) 94, 383, 1991, 2148, 2520, 2529, 3025, 3160
BseLI CCNNNNNNNGG 6 cut(s) 605, 1997, 2163, 2575, 2987, 3125
BseMI GCAATG 1 cut(s) 2831
BseMII CTCAG 5 cut(s) 202, 990, 2650, 2791, 3024
BseNI ACTGG 5 cut(s) 77, 339, 396, 580, 2059
BseRI GAGGAG 2 cut(s) 191, 2609
BseXI GCAGC 8 cut(s) 105, 327, 1108, 1758, 2425, 2979, 2982, 3173
Bsh1236I CGCG 2 cut(s) 2097, 2134
BshFI GGCC 2 cut(s) 542, 3214
BshNI GGYRCC 1 cut(s) 965
BsiHKAI GWGCWC 2 cut(s) 1743, 1783
BsiHKCI CYCGRG 4 cut(s) 2113, 2288, 2519, 3017
BsiSI CCGG 4 cut(s) 1328, 2529, 3109, 3190
BsiWI CGTACG 1 cut(s) 1687
BslFI GGGAC 3 cut(s) 1640, 1677, 2502
BslI CCNNNNNNNGG 6 cut(s) 605, 1997, 2163, 2575, 2987, 3125
BsmAI GTCTC 6 cut(s) 728, 803, 1522, 1827, 2147, 3191
BsmBI CGTCTC 1 cut(s) 803
BsmFI GGGAC 3 cut(s) 1640, 1677, 2502
BsmI GAATGC 1 cut(s) 2534
BsnI GGCC 2 cut(s) 542, 3214
Bso31I GGTCTC 1 cut(s) 2147
BsoBI CYCGRG 4 cut(s) 2113, 2288, 2519, 3017
Bsp119I TTCGAA 1 cut(s) 3035
Bsp1286I GDGCHC 2 cut(s) 1743, 1783
Bsp13I TCCGGA 1 cut(s) 3108
BspANI GGCC 2 cut(s) 542, 3214
BspCNI CTCAG 5 cut(s) 201, 991, 2649, 2790, 3023
BspEI TCCGGA 1 cut(s) 3108
BspFNI CGCG 2 cut(s) 2097, 2134
BspHI TCATGA 2 cut(s) 358, 940
BspLI GGNNCC 2 cut(s) 381, 967
BspMAI CTGCAG 1 cut(s) 1060
BspPI GGATC 3 cut(s) 885, 1338, 3016
BspT104I TTCGAA 1 cut(s) 3035
BspT107I GGYRCC 1 cut(s) 965
BspTI CTTAAG 1 cut(s) 883
BspTNI GGTCTC 1 cut(s) 2147
BsrDI GCAATG 1 cut(s) 2831
BsrI ACTGG 5 cut(s) 77, 339, 396, 580, 2059
BssECI CCNNGG 8 cut(s) 94, 383, 1991, 2148, 2520, 2529, 3025, 3160
BssNAI GTATAC 1 cut(s) 649
BssT1I CCWWGG 2 cut(s) 1991, 2148
Bst1107I GTATAC 1 cut(s) 649
Bst2UI CCWGG 2 cut(s) 385, 2322
Bst6I CTCTTC 2 cut(s) 498, 2604
BstAFI CTTAAG 1 cut(s) 883
BstAPI GCANNNNNTGC 1 cut(s) 2755
BstBAI YACGTR 3 cut(s) 1687, 2495, 2795
BstBI TTCGAA 1 cut(s) 3035
BstC8I GCNNGC 4 cut(s) 955, 1233, 2548, 3116
BstDSI CCRYGG 2 cut(s) 3025, 3160
BstEII GGTNACC 1 cut(s) 2524
BstFNI CGCG 2 cut(s) 2097, 2134
BstHHI GCGC 2 cut(s) 2097, 2134
BstMAI GTCTC 6 cut(s) 728, 803, 1522, 1827, 2147, 3191
BstMWI GCNNNNNNNGC 5 cut(s) 220, 1581, 1610, 1807, 2755
BstNI CCWGG 2 cut(s) 385, 2322
BstNSI RCATGY 5 cut(s) 790, 1034, 1448, 2694, 2758
BstPAI GACNNNNGTC 1 cut(s) 372
BstPI GGTNACC 1 cut(s) 2524
BstSCI CCNGG 3 cut(s) 383, 2320, 2528
BstSFI CTRYAG 2 cut(s) 1056, 2610
BstSNI TACGTA 1 cut(s) 1687
BstUI CGCG 2 cut(s) 2097, 2134
BstV1I GCAGC 8 cut(s) 105, 327, 1108, 1758, 2425, 2979, 2982, 3173
BstV2I GAAGAC 3 cut(s) 110, 484, 1385
BstX2I RGATCY 7 cut(s) 877, 1060, 1330, 1357, 2011, 2859, 3021
BstXI CCANNNNNNTGG 2 cut(s) 391, 1239
BstYI RGATCY 7 cut(s) 877, 1060, 1330, 1357, 2011, 2859, 3021
BstZ17I GTATAC 1 cut(s) 649
BsuI GTATCC 1 cut(s) 381
BsuRI GGCC 2 cut(s) 542, 3214
BtgI CCRYGG 2 cut(s) 3025, 3160
BtgZI GCGATG 1 cut(s) 2881
BtrI CACGTC 1 cut(s) 938
BtsI GCAGTG 1 cut(s) 2906
BtsIMutI CAGTG 3 cut(s) 1733, 2052, 2906
Cac8I GCNNGC 4 cut(s) 955, 1233, 2548, 3116
CaiI CAGNNNCTG 1 cut(s) 334
CciI TCATGA 2 cut(s) 358, 940
CfoI GCGC 2 cut(s) 2097, 2134
Cfr13I GGNCC 1 cut(s) 3213
CseI GACGC 2 cut(s) 1937, 2929
Csp6I GTAC 8 cut(s) 332, 966, 1448, 1684, 1688, 1756, 1860, 2615
CviQI GTAC 8 cut(s) 332, 966, 1448, 1684, 1688, 1756, 1860, 2615
Eam1104I CTCTTC 2 cut(s) 498, 2604
EarI CTCTTC 2 cut(s) 498, 2604
Eco105I TACGTA 1 cut(s) 1687
Eco130I CCWWGG 2 cut(s) 1991, 2148
Eco31I GGTCTC 1 cut(s) 2147
Eco57I CTGAAG 6 cut(s) 294, 1292, 1374, 1709, 1739, 2069
Eco88I CYCGRG 4 cut(s) 2113, 2288, 2519, 3017
Eco91I GGTNACC 1 cut(s) 2524
EcoO65I GGTNACC 1 cut(s) 2524
EcoRII CCWGG 2 cut(s) 383, 2320
EcoT14I CCWWGG 2 cut(s) 1991, 2148
EcoT22I ATGCAT 3 cut(s) 1488, 1606, 2111
ErhI CCWWGG 2 cut(s) 1991, 2148
Esp3I CGTCTC 1 cut(s) 803
FalI AAGNNNNNCTT 4 cut(s) 423, 455, 2557, 2589
FaqI GGGAC 3 cut(s) 1640, 1677, 2502
FauNDI CATATG 1 cut(s) 1196
FbaI TGATCA 1 cut(s) 1618
FblI GTMKAC 3 cut(s) 648, 2908, 2943
GlaI GCGC 2 cut(s) 2096, 2133
GsuI CTGGAG 4 cut(s) 107, 356, 1542, 2273
HaeIII GGCC 2 cut(s) 542, 3214
HapII CCGG 4 cut(s) 1328, 2529, 3109, 3190
HgaI GACGC 2 cut(s) 1937, 2929
HhaI GCGC 2 cut(s) 2097, 2134
Hin6I GCGC 2 cut(s) 2095, 2132
HinP1I GCGC 2 cut(s) 2095, 2132
HincII GTYRAC 4 cut(s) 85, 424, 980, 2944
HindII GTYRAC 4 cut(s) 85, 424, 980, 2944
HindIII AAGCTT 2 cut(s) 1721, 2558
HpaII CCGG 4 cut(s) 1328, 2529, 3109, 3190
HphI GGTGA 6 cut(s) 1478, 1778, 2228, 2473, 2911, 3058
Hpy166II GTNNAC 9 cut(s) 85, 424, 649, 980, 1860, 2909, 2944, 2960, 3057
Hpy188I TCNGA 9 cut(s) 95, 191, 1000, 1153, 1266, 1272, 1400, 2508, 2639
Hpy8I GTNNAC 9 cut(s) 85, 424, 649, 980, 1860, 2909, 2944, 2960, 3057
Hpy99I CGWCG 3 cut(s) 1372, 2228, 2945
HpyCH4IV ACGT 8 cut(s) 812, 937, 1686, 1690, 1880, 2494, 2794, 3256
HpyF10VI GCNNNNNNNGC 5 cut(s) 220, 1581, 1610, 1807, 2755
HpySE526I ACGT 8 cut(s) 812, 937, 1686, 1690, 1880, 2494, 2794, 3256
HspAI GCGC 2 cut(s) 2095, 2132
Kpn2I TCCGGA 1 cut(s) 3108
KpnI GGTACC 1 cut(s) 969
Ksp22I TGATCA 1 cut(s) 1618
LmnI GCTCC 3 cut(s) 23, 126, 3111
Lsp1109I GCAGC 8 cut(s) 105, 327, 1108, 1758, 2425, 2979, 2982, 3173
LweI GCATC 7 cut(s) 160, 1613, 1810, 1974, 2118, 2134, 2858
MaeII ACGT 8 cut(s) 812, 937, 1686, 1690, 1880, 2494, 2794, 3256
MfeI CAATTG 3 cut(s) 600, 1614, 3094
MflI RGATCY 7 cut(s) 877, 1060, 1330, 1357, 2011, 2859, 3021
MhlI GDGCHC 2 cut(s) 1743, 1783
MlyI GAGTC 6 cut(s) 210, 515, 672, 1104, 1588, 3009
MmeI TCCRAC 6 cut(s) 1378, 1521, 1542, 2287, 2310, 2826
Mph1103I ATGCAT 3 cut(s) 1488, 1606, 2111
MroI TCCGGA 1 cut(s) 3108
MroXI GAANNNNTTC 3 cut(s) 2598, 2644, 2817
MslI CAYNNNNRTG 2 cut(s) 246, 945
MspA1I CMGCKG 1 cut(s) 113
MspCI CTTAAG 1 cut(s) 883
MspI CCGG 4 cut(s) 1328, 2529, 3109, 3190
MspR9I CCNGG 3 cut(s) 385, 2322, 2530
MunI CAATTG 3 cut(s) 600, 1614, 3094
Mva1269I GAATGC 1 cut(s) 2534
MvaI CCWGG 2 cut(s) 385, 2322
MvnI CGCG 2 cut(s) 2097, 2134
MwoI GCNNNNNNNGC 5 cut(s) 220, 1581, 1610, 1807, 2755
NciI CCSGG 1 cut(s) 2530
NdeI CATATG 1 cut(s) 1196
NlaIV GGNNCC 2 cut(s) 381, 967
NmuCI GTSAC 7 cut(s) 571, 751, 859, 928, 2137, 2216, 2461
NsiI ATGCAT 3 cut(s) 1488, 1606, 2111
NspI RCATGY 5 cut(s) 790, 1034, 1448, 2694, 2758
NspV TTCGAA 1 cut(s) 3035
PaeR7I CTCGAG 2 cut(s) 2288, 3017
PagI TCATGA 2 cut(s) 358, 940
PciI ACATGT 1 cut(s) 1444
PcsI WCGNNNNNNNCGW 2 cut(s) 651, 2500
PctI GAATGC 1 cut(s) 2534
PdmI GAANNNNTTC 3 cut(s) 2598, 2644, 2817
PfeI GAWTC 6 cut(s) 305, 1267, 2293, 2594, 2813, 2972
Pfl23II CGTACG 1 cut(s) 1687
PflFI GACNNNGTC 2 cut(s) 662, 814
PleI GAGTC 6 cut(s) 209, 514, 671, 1104, 1587, 3009
PpsI GAGTC 6 cut(s) 209, 514, 671, 1104, 1587, 3009
Ppu21I YACGTR 3 cut(s) 1687, 2495, 2795
PscI ACATGT 1 cut(s) 1444
PshAI GACNNNNGTC 1 cut(s) 372
PshBI ATTAAT 1 cut(s) 1937
Psp6I CCWGG 2 cut(s) 383, 2320
PspEI GGTNACC 1 cut(s) 2524
PspGI CCWGG 2 cut(s) 383, 2320
PspLI CGTACG 1 cut(s) 1687
PspN4I GGNNCC 2 cut(s) 381, 967
PspPI GGNCC 1 cut(s) 3213
PsrI GAACNNNNNNTAC 2 cut(s) 372, 404
PstI CTGCAG 1 cut(s) 1060
PstNI CAGNNNCTG 1 cut(s) 334
PsuI RGATCY 7 cut(s) 877, 1060, 1330, 1357, 2011, 2859, 3021
PsyI GACNNNGTC 2 cut(s) 662, 814
RsaI GTAC 8 cut(s) 333, 967, 1449, 1685, 1689, 1757, 1861, 2616
RsaNI GTAC 8 cut(s) 332, 966, 1448, 1684, 1688, 1756, 1860, 2615
RseI CAYNNNNRTG 2 cut(s) 246, 945
SalI GTCGAC 1 cut(s) 2942
Sau96I GGNCC 1 cut(s) 3213
ScaI AGTACT 1 cut(s) 2616
SchI GAGTC 6 cut(s) 210, 515, 672, 1104, 1588, 3009
ScrFI CCNGG 3 cut(s) 385, 2322, 2530
SduI GDGCHC 2 cut(s) 1743, 1783
SfaNI GCATC 7 cut(s) 160, 1613, 1810, 1974, 2118, 2134, 2858
SfcI CTRYAG 2 cut(s) 1056, 2610
Sfr274I CTCGAG 2 cut(s) 2288, 3017
SfuI TTCGAA 1 cut(s) 3035
SlaI CTCGAG 2 cut(s) 2288, 3017
SmiMI CAYNNNNRTG 2 cut(s) 246, 945
SmlI CTYRAG 6 cut(s) 883, 1305, 2288, 2435, 2935, 3017
SmoI CTYRAG 6 cut(s) 883, 1305, 2288, 2435, 2935, 3017
SnaBI TACGTA 1 cut(s) 1687
SspI AATATT 2 cut(s) 1162, 2128
StyD4I CCNGG 3 cut(s) 383, 2320, 2528
StyI CCWWGG 2 cut(s) 1991, 2148
TaiI ACGT 8 cut(s) 815, 940, 1689, 1693, 1883, 2497, 2797, 3259
TatI WGTACW 2 cut(s) 1859, 2614
TauI GCSGC 4 cut(s) 113, 321, 1613, 2310
TfiI GAWTC 6 cut(s) 305, 1267, 2293, 2594, 2813, 2972
TscAI CASTG 3 cut(s) 1733, 2059, 2906
TseFI GTSAC 7 cut(s) 571, 751, 859, 928, 2137, 2216, 2461
TseI GCWGC 8 cut(s) 118, 315, 1121, 1771, 2413, 2992, 2995, 3186
Tsp45I GTSAC 7 cut(s) 571, 751, 859, 928, 2137, 2216, 2461
TspRI CASTG 3 cut(s) 1733, 2059, 2906
Tth111I GACNNNGTC 2 cut(s) 662, 814
Vha464I CTTAAG 1 cut(s) 883
VspI ATTAAT 1 cut(s) 1937
XapI RAATTY 4 cut(s) 710, 827, 2656, 3087
XbaI TCTAGA 1 cut(s) 197
XceI RCATGY 5 cut(s) 790, 1034, 1448, 2694, 2758
XcmI CCANNNNNNNNNTGG 1 cut(s) 493
XhoI CTCGAG 2 cut(s) 2288, 3017
XmiI GTMKAC 3 cut(s) 648, 2908, 2943
XmnI GAANNNNTTC 3 cut(s) 2598, 2644, 2817
ZrmI AGTACT 1 cut(s) 2616
Zsp2I ATGCAT 3 cut(s) 1488, 1606, 2111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.