RchiOBHm_Chr5g0045901

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
41946661 .. 41953727
7067 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32395

Sequence Viewer

Length: 3246 bp
ATGGCTCTGGAAGTTGTGGGTGGAGCTTTTCTCTCCTCTGCTCTTGCTGTTCTGTTTGATAGGATGGCTTCGCGTCCGGTTCTTGACTTCATCCGAGGAAAGAAGAATGCCGCTGGGCTGCTCCACAAGTTGAAGATCAAGTTGTTGTCGGTTAATAAGTTGCTCGATGATGCAGAGGAGAAGCAACTCAGAAACTCTAGAGTCAGGGAATGGCTTAATGAGCTTAAACATGTTCTCTATCATGCCGATGACCTGTTGGATGAAATCAAGACTGAAGCTCTGCGTTGCAAGATGGAACAAGAAGATTCTGGAAGCAGCAGCACAAATCAGGTACTCAAGTTTAGTTCTATTTCCATTCACGAACTTGACGAAAGTCTGGAACCCAGGATTCTGGAGATTCTTGACAGGCTACAACTTATTGTCGACGAAAAAGATGTGCTTGATTTGAAAGAGGGTGTTAAAGATGGACCACAAGGAAGACTACCCACAACTTCTTTGGTAGAAGAGTCTAGTGTATATGGAAGGGATGAAGAAAAGGAGGCCATTATCAAGTTATTGTTAGCGGATGGTATGACTGGAAATAAGACAGATGTGCTTCCAATTGTGGGCATGGGTGGGCTTGGAAAGACCACCCTTGCTCAACTCGTATACAACGATGACAGAGTCAAGCAACGTTTTGCTCATCGATCATGGTCTTGTGTTTCAGAAGAATTTGATGTTATCAAAATAACACAGACAATTTACGGGGCGGTCACTTCACAAACTTGTAACATCACAGATCTAGACATGCTTCAAGTTGAACTAAAGAAGACGTTGACAGGGAAGAAATTTCTCTTTGTCCTTGATGATGTTTGGGACGTGAATTTAATGAAGTGGGATCTCTTGAGCCGACCCTTTGAGAGTGGAGGTCATGGAAGTAAGATCATTGTCACAACACGTAATGAAGATGTCGCATGCAGGACGGGTACCCTTCCAAGTGAACATCTAGTGCAACTATCTGAGGAAAACTGCTGGTTGCTGTTCTCAAAACATGCCTTCAAGAATGCAGGTGTTACTGCAGATCCGTTGCTTGAAGTGATTGGTAAACAGATTGCTCAAAAGTGTAAAGGACTCCCTTTAGCTGCAAAATCACTTGGGGGTCTATTACGTTCTGAACCAAATATTGAGAAATGGCAAGAAATATTGAACAATGACATATGGGAGTTGCAAGATAAAGGGAATGACATTTTGCCAGCTCTATGGTTGAGCTACCATTATCTACCTCCACATCTGAAGCGTTGTTTTGCTTACTGTTCCATATTTCCTCAAGATTATGAGTTTTACAAATCGAAGCTGGTTTTGTTGTGGATGGCTGAAGATCTCTTACCACTGAGATCGAAGACTACAATTGAAGAAGTCGGAGAGAACTACTTTGATGATCTAGTGTCAAGGTCATTTTTTCAACATGTACCTAATCACTTTTCTGGTGCTGGTGAGGCAGTTTTCACAATGCATGACCTTATCCATGACTTAGCAAACTTTGTCTCCGGAGAGTTTTGTGTTAGGTTGGAGAACAATGACTCGGTACTTGAGAATGTCAGTAAGAGTCGCCACTTTTCGTGTATGGATGCATCTGCCGTACTTCATCAATGGGACAGTTTGTATGAAGCCAAGTATTTGCGAACCTTTCTAGTATTAAAATCTGGTGGACTTTCCAAGTTAGATTTTGATATATTCCTGAAGCTTCAGTGTTTAAGAGTGCTCCATTTATCAGGGAGTGTGATTGTTGAGCTGCCTAGTTCCATTAGCAAGTTGAAGCATCTAAGGCACTTGGACTTGTCTTACTTATCAATTAAAAAGTTACCTGATGAAATGTGTACTTTATATAATTTGCAGACGTTGTTGTTGTCGTTTTCTGCAAATCTAGTTGAGTTGCCAACTGATTTGGGAAGATTAATCAACTTGCGTCATCTTGATATTTTTGCCACAAGGATAGAAAAGATGCCACCAAGGATGGGCAAAATGAAAGATCTCCAAACATTAAGCGGTGTGTTCGTCCTAGACAAATACACTGGTGATAACATTGTGGAGATTAAAGAGCTTCAGCAGTTGCGCGGAACACTTCGTATCTCGGGGCTTCGCAATATTGTGCATGTCACAGATGCCATTATGAGAAGGAAGAAGCATGTGGATGAATTAGTTTTGGAATGGGGAGGCAAGTCTGGTGACACCGACGATACACAAAAAGAGAGGGATGTGCTGGAGAACCTCCAACCTCATACAAACCTAAAAAAACTCGCGATTCAATCTTATGGCGGCACAAGATTTCCAGGTTGGTTGGAAGATCTTTCTAGTTTATCTAATCTGGTTCGTCTTCGACTTCTGGATTGCGGAAATTGTTTGTCGTTGCCATCAGTTGAGCAGCTACCCTCCCTCCAAGAGCTTGAGATTCAAGGATTTAATGGAGTGGCGACTGTGGGTTCTAAGCCTTTTCCTAATCTTCGTAAGCTTCGTCTGAAATCTTGTCCCGAGGTAACCGGGGCATTCATGTTAGCCTGCTTCCCAAAGCTTGAAATACTCGATTTGGTGGATGTGAATGTAGAATCTCTTAATTCCCCTTCACTCCTCTCCCTTGTCGAACTTACAATATCTTCATGCCCAAATTTTGTTTGTTTTCCCGATGGAGGCCTGGATGCGCCCAACTTGGAGACCATCAAAGTCCATGAATGTTCAAAACTGAGGTCATTGCCGCAACACATGCACAACCTTCTCCCATCTCTGAGGCGGTTGTTCGTACATGATTGTCCAGAATTGGAATCATTTCCCGAAGGGGGATTGCCGTCTAAGTTGCAATGCTTGTACCTCGGGGGCTGCAAGAAACTCCTCATTGGAAACCGTATGCAGTGGGGTCTACCAACACTCACCTCTCTCTATATCTTGAGCGTCAACTTTGAGAGATATGAACAAGTTGTAGATTCATTTCCAGACGAGGGGCTGCTGCCCACCACTCTCTCACGACTCGACATCTACGGTATTTCGAAGCTGGACGGCAAGGGGTTTACACAACTCACCTCTCTTAAAGAGTTGGCGATTCACGATTGCTCTGAACTCCGGGGCTTGCCAGATGAAGGGCTACCCACTTCCCTTTCTTATCTGTTGATCCGTGACTGTCCTTTACTAGAACAACGTTGCCAGAGAGAAACAGGGGAAGATTGGCCCAAGATTGCTCACATCAAGAGCATATTTATCAATCTCTACCGTATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

1081

Amino Acids

121.95

Weight (kDa)

5.83

Isoelectric Point (pI)

45.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 10 - 102 7e-18 Rx N-terminal domain
NB-ARC PF00931 177 - 348 1.3e-35 NB-ARC domain
WHD_DRP PF23559 433 - 505 8.4e-25 Disease resistance protein Winged helix domain
LRR_14 PF23598 574 - 864 9.8e-28 Leucine-rich repeat region
LRR_R13L1-DRL21 PF25019 688 - 812 5.9e-36 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000035)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G14470 AT3G14470
fragaria_vesca FvH4_1g01220 FvH4_1g01230 FvH4_3g24551 FvH4_3g24552 FvH4_4g29310 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_6g39860 FvH4_6g39861 FvH4_7g11380
malus_domestica MD00G1072900.v1.1 MD00G1073100.v1.1 MD00G1120600.v1.1 MD00G1120900.v1.1 MD00G1121000.v1.1 MD00G1121200.v1.1 MD00G1152300.v1.1 MD00G1203600.v1.1 MD00G1203700.v1.1 MD02G1250900.v1.1 MD02G1251900.v1.1 MD02G1252800.v1.1 MD02G1277100.v1.1 MD02G1277200.v1.1 MD02G1277400.v1.1 MD02G1286100.v1.1 MD02G1286200.v1.1 MD02G1286900.v1.1 MD03G1006200.v1.1 MD03G1015300.v1.1 MD03G1015500.v1.1 MD03G1015900.v1.1 MD03G1016000.v1.1 MD03G1024900.v1.1 MD03G1025000.v1.1 MD03G1025500.v1.1 MD03G1026000.v1.1 MD03G1026500.v1.1 MD03G1031800.v1.1 MD03G1072200.v1.1 MD07G1028000.v1.1 MD07G1028300.v1.1 MD07G1029400.v1.1 MD07G1029500.v1.1 MD07G1040300.v1.1 MD07G1044500.v1.1 MD07G1045100.v1.1 MD07G1045500.v1.1 MD07G1050700.v1.1 MD07G1050900.v1.1 MD07G1055800.v1.1 MD07G1056200.v1.1 MD07G1056600.v1.1 MD07G1057100.v1.1 MD07G1057200.v1.1 MD08G1056500.v1.1 MD08G1056600.v1.1 MD08G1056700.v1.1 MD08G1056800.v1.1 MD08G1128800.v1.1 MD08G1129500.v1.1 MD08G1130000.v1.1 MD11G1066700.v1.1 MD11G1066800.v1.1 MD11G1066900.v1.1 MD11G1067000.v1.1 MD11G1067500.v1.1 MD11G1069800.v1.1 MD11G1070400.v1.1 MD11G1071100.v1.1 MD11G1071200.v1.1 MD11G1077200.v1.1 MD11G1077700.v1.1 MD11G1077900.v1.1 MD11G1078100.v1.1 MD11G1078300.v1.1 MD11G1078500.v1.1 MD11G1135200.v1.1 MD11G1135400.v1.1 MD11G1152900.v1.1 MD11G1153000.v1.1 MD17G1056800.v1.1
prunus_persica Prupe.2G037800_v2.0.a1 Prupe.2G037800_v2.0.a1 Prupe.2G037800_v2.0.a1 Prupe.2G037800_v2.0.a1 Prupe.2G040500_v2.0.a1 Prupe.2G040700_v2.0.a1 Prupe.2G043000_v2.0.a1 Prupe.2G043100_v2.0.a1 Prupe.2G043200_v2.0.a1 Prupe.2G046000_v2.0.a1 Prupe.2G046300_v2.0.a1 Prupe.2G046400_v2.0.a1 Prupe.2G046400_v2.0.a1 Prupe.2G046700_v2.0.a1 Prupe.2G046900_v2.0.a1 Prupe.2G051100_v2.0.a1 Prupe.2G052200_v2.0.a1 Prupe.2G053600_v2.0.a1 Prupe.2G053600_v2.0.a1 Prupe.2G053600_v2.0.a1 Prupe.2G053600_v2.0.a1 Prupe.2G053700_v2.0.a1 Prupe.2G053800_v2.0.a1 Prupe.2G053900_v2.0.a1 Prupe.2G054000_v2.0.a1 Prupe.2G054100_v2.0.a1 Prupe.2G054200_v2.0.a1 Prupe.2G054300_v2.0.a1 Prupe.2G054300_v2.0.a1 Prupe.2G054300_v2.0.a1 Prupe.2G054300_v2.0.a1 Prupe.2G054500_v2.0.a1 Prupe.2G054700_v2.0.a1 Prupe.4G286000_v2.0.a1 Prupe.4G286000_v2.0.a1 Prupe.4G286000_v2.0.a1 Prupe.6G129800_v2.0.a1 Prupe.6G130000_v2.0.a1 Prupe.6G130000_v2.0.a1
pyrus_communis pycom02g23740 pycom02g23750 pycom02g24320 pycom03g00620 pycom03g01280 pycom03g01320 pycom03g01350 pycom03g01360 pycom03g01370 pycom03g01380 pycom03g01390 pycom03g02160 pycom03g02170 pycom03g05850 pycom03g09810 pycom07g02120 pycom07g02790 pycom07g02800 pycom07g03210 pycom07g03660 pycom07g03670 pycom07g04350 pycom08g10780 pycom08g10840 pycom08g10910 pycom11g05650 pycom11g05670 pycom11g05800 pycom11g05880 pycom11g05890 pycom11g05940 pycom11g06490 pycom11g06500 pycom11g06520 pycom11g06560 pycom11g06570 pycom11g11230 pycom11g13650 pycom17g05700
rosa_chinensis RchiOBHm_Chr1g0318341 RchiOBHm_Chr1g0318901 RchiOBHm_Chr1g0318931 RchiOBHm_Chr1g0327301 RchiOBHm_Chr1g0328491 RchiOBHm_Chr1g0336761 RchiOBHm_Chr1g0336831 RchiOBHm_Chr1g0340721 RchiOBHm_Chr1g0342461 RchiOBHm_Chr1g0342471 RchiOBHm_Chr1g0342481 RchiOBHm_Chr1g0346131 RchiOBHm_Chr1g0346191 RchiOBHm_Chr1g0346211 RchiOBHm_Chr1g0346241 RchiOBHm_Chr1g0346261 RchiOBHm_Chr1g0346281 RchiOBHm_Chr1g0346461 RchiOBHm_Chr1g0346471 RchiOBHm_Chr1g0346481 RchiOBHm_Chr1g0346501 RchiOBHm_Chr1g0347691 RchiOBHm_Chr1g0347701 RchiOBHm_Chr1g0347751 RchiOBHm_Chr1g0347791 RchiOBHm_Chr1g0347971 RchiOBHm_Chr1g0349661 RchiOBHm_Chr1g0349741 RchiOBHm_Chr1g0357561 RchiOBHm_Chr3g0492601 RchiOBHm_Chr5g0039181 RchiOBHm_Chr5g0039231 RchiOBHm_Chr5g0039241 RchiOBHm_Chr5g0039251 RchiOBHm_Chr5g0039531 RchiOBHm_Chr5g0044001 RchiOBHm_Chr5g0044571 RchiOBHm_Chr5g0044611 RchiOBHm_Chr5g0044631 RchiOBHm_Chr5g0044641 RchiOBHm_Chr5g0044651 RchiOBHm_Chr5g0044661 RchiOBHm_Chr5g0044681 RchiOBHm_Chr5g0045221 RchiOBHm_Chr5g0045901 RchiOBHm_Chr5g0045991 RchiOBHm_Chr5g0046001 RchiOBHm_Chr5g0046011
rosa_laevigata RLG00000028715 RLG00000028718 RLG00000029034 RLG00000029926 RLG00000030516 RLG00000034285 RLG00000034288
rosa_multiflora Rmu_co7987576.1_g000001 Rmu_co8028038.1_g000001 Rmu_co8104858.1_g000001 Rmu_co8185828.1_g000001 Rmu_co8227651.1_g000001 Rmu_co8235061.1_g000001 Rmu_co8246845.1_g000001 Rmu_co8254315.1_g000001 Rmu_co8284899.1_g000001 Rmu_co8401461.1_g000001 Rmu_co8475625.1_g000001 Rmu_co8502681.1_g000001 Rmu_sc0000250.1_g000005 Rmu_sc0000492.1_g000001 Rmu_sc0000533.1_g000004 Rmu_sc0000795.1_g000114 Rmu_sc0000831.1_g000039 Rmu_sc0000907.1_g000014 Rmu_sc0000907.1_g000034 Rmu_sc0001035.1_g000007 Rmu_sc0001035.1_g000011 Rmu_sc0001035.1_g000012 Rmu_sc0001099.1_g000003 Rmu_sc0001157.1_g000008 Rmu_sc0001212.1_g000016 Rmu_sc0001212.1_g000017 Rmu_sc0001304.1_g000027 Rmu_sc0001304.1_g000033 Rmu_sc0001773.1_g000019 Rmu_sc0001836.1_g000069 Rmu_sc0001856.1_g000004 Rmu_sc0002286.1_g000003 Rmu_sc0002286.1_g000004 Rmu_sc0002286.1_g000005 Rmu_sc0002286.1_g000007 Rmu_sc0002286.1_g000015 Rmu_sc0002495.1_g000025 Rmu_sc0002545.1_g000008 Rmu_sc0002545.1_g000009 Rmu_sc0002662.1_g000009 Rmu_sc0003363.1_g000019 Rmu_sc0003363.1_g000022 Rmu_sc0003600.1_g000057 Rmu_sc0003809.1_g000036 Rmu_sc0003809.1_g000037 Rmu_sc0005008.1_g000026 Rmu_sc0005008.1_g000028 Rmu_sc0005028.1_g000001 Rmu_sc0005144.1_g000022 Rmu_sc0005167.1_g000004 Rmu_sc0005626.1_g000005 Rmu_sc0005626.1_g000018 Rmu_sc0006228.1_g000011 Rmu_sc0006609.1_g000007 Rmu_sc0006609.1_g000009 Rmu_sc0006609.1_g000015 Rmu_sc0006609.1_g000016 Rmu_sc0006609.1_g000017 Rmu_sc0006609.1_g000018 Rmu_sc0007060.1_g000003 Rmu_sc0007318.1_g000011 Rmu_sc0007992.1_g000002 Rmu_sc0009172.1_g000001 Rmu_sc0010151.1_g000010 Rmu_sc0010151.1_g000011 Rmu_sc0011778.1_g000001 Rmu_sc0011778.1_g000005 Rmu_sc0011778.1_g000009 Rmu_sc0012293.1_g000001 Rmu_sc0012293.1_g000002 Rmu_sc0016606.1_g000001 Rmu_sc0016836.1_g000001 Rmu_sc0021084.1_g000008 Rmu_sc0021449.1_g000001 Rmu_sc0026523.1_g000001 Rmu_sc0027133.1_g000003 Rmu_sc0038674.1_g000001 Rmu_ssc0000255.1_g000053 Rmu_ssc0000255.1_g000063 Rmu_ssc0000255.1_g000064 Rmu_ssc0000263.1_g000004 Rmu_ssc0000400.1_g000027
rosa_roxburghii Rroxscaffold_1G00035290 Rroxscaffold_1G00036350 Rroxscaffold_1G00036360 Rroxscaffold_1G00036400 Rroxscaffold_1G00036460 Rroxscaffold_1G00037000 Rroxscaffold_1G00040440 Rroxscaffold_1G00041890 Rroxscaffold_1G00041920 Rroxscaffold_4G00307460 Rroxscaffold_4G00307500 Rroxscaffold_4G00308500 Rroxscaffold_4G00308510 Rroxscaffold_4G00308770 Rroxscaffold_4G00313020 Rroxscaffold_4G00321580 Rroxscaffold_4G00323030 Rroxscaffold_4G00326850 Rroxscaffold_4G00328770 Rroxscaffold_4G00328780 Rroxscaffold_4G00329310 Rroxscaffold_5G00352110
rosa_rugosa Rorug01G0020700 Rorug01G0023000 Rorug01G0023100 Rorug01G0023200 Rorug01G0023300 Rorug01G0023400 Rorug01G0024500 Rorug01G0025100 Rorug01G0025200 Rorug01G0025400 Rorug01G0025400 Rorug01G0064700 Rorug01G0065300 Rorug01G0127600 Rorug01G0128000 Rorug01G0148000.1 Rorug01G0150500.1 Rorug01G0161600.1 Rorug01G0161800.1 Rorug01G0163600.1 Rorug01G0178300 Rorug01G0178500 Rorug01G0178700 Rorug01G0179900 Rorug01G0180200 Rorug01G0180300 Rorug01G0180400 Rorug01G0189000 Rorug01G0189100 Rorug01G0190500 Rorug01G0204800 Rorug05G0177200 Rorug05G0210300 Rorug05G0210300 Rorug05G0210300 Rorug05G0215400 Rorug05G0215400 Rorug05G0215400 Rorug05G0215400 Rorug05G0215500 Rorug05G0215600 Rorug05G0215800 Rorug05G0215900 Rorug05G0215900 Rorug05G0216000 Rorug05G0216200 Rorug05G0216300 Rorug05G0221900 Rorug07G0276700
rosa_samantha Rh1BG028400 Rh1BG033500 Rh1BG065100 Rh1BG073100 Rh1BG073200 Rh1BG117000 Rh1BG164000 Rh1BG164200 Rh1BG172100 Rh1BG173900 Rh1BG174100 Rh1BG188400 Rh1CG036000 Rh1CG036500 Rh1CG089900 Rh1CG140200 Rh1CG164700 Rh1CG182600 Rh1CG182900 Rh1CG183400 Rh1CG191300 Rh1CG192000 Rh1CG207700 Rh1DG033800 Rh1DG033900 Rh1DG096000 Rh5AG299900 Rh5AG304500 Rh5AG307100 Rh5AG307500 Rh5CG301600 Rh5CG329800 Rh5CG333800 Rh5DG311400 Rh5DG316300 Rh5DG316400 Rh5DG316700 Rh5DG316800 Rh5DG316900 Rh5DG326100 Rh7AG431900 Rh7CG451000
rosa_wichuraiana Rw0G007840 Rw0G009850 Rw0G013000 Rw0G015090 Rw0G021190 Rw1G002610 Rw1G004320 Rw1G006520 Rw1G007250 Rw1G012020 Rw1G013830 Rw1G014770 Rw1G016300 Rw1G016600 Rw1G016650 Rw1G017290 Rw1G017420 Rw1G017630 Rw1G017650 Rw1G017660 Rw1G017690 Rw1G017700 Rw1G018960 Rw5G024660 Rw5G024700 Rw5G024720 Rw5G024740 Rw5G024980 Rw5G027710 Rw5G027720 Rw5G027730 Rw5G027740 Rw5G027750 Rw5G028130 Rw5G028740 Rw5G028750 Rw5G028790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1037
Acc36I ACCTGC 1 cut(s) 1037
Acc65I GGTACC 1 cut(s) 965
AccB1I GGYRCC 1 cut(s) 965
AccI GTMKAC 3 cut(s) 423, 648, 2890
AccII CGCG 3 cut(s) 73, 2094, 2279
AccIII TCCGGA 1 cut(s) 1526
AciI CCGC 9 cut(s) 111, 563, 749, 2025, 2094, 2295, 2370, 2729, 2764
AclI AACGTT 2 cut(s) 673, 3166
AclWI GGATC 3 cut(s) 885, 1055, 3133
AcsI RAATTY 4 cut(s) 710, 827, 862, 2641
AcuI CTGAAG 6 cut(s) 294, 1292, 1374, 1709, 1739, 2066
AfaI GTAC 8 cut(s) 333, 967, 1449, 1566, 1620, 1858, 2775, 2840
AfiI CCNNNNNNNGG 6 cut(s) 605, 1994, 2663, 2810, 2969, 3107
AflIII ACRYGT 3 cut(s) 229, 935, 1444
AjiI CACGTC 1 cut(s) 859
AjnI CCWGG 3 cut(s) 383, 2308, 2667
Alw21I GWGCWC 1 cut(s) 1743
Alw26I GTCTC 2 cut(s) 1528, 2681
AlwI GGATC 3 cut(s) 885, 1055, 3133
Ama87I CYCGRG 3 cut(s) 2110, 2507, 2843
Aor13HI TCCGGA 1 cut(s) 1526
AoxI GGCC 3 cut(s) 540, 2665, 3194
ApeKI GCWGC 9 cut(s) 118, 315, 318, 1121, 1771, 2401, 2850, 2974, 2977
ApoI RAATTY 4 cut(s) 710, 827, 862, 2641
ArsI GACNNNNNNTTYG 2 cut(s) 2705, 2737
AseI ATTAAT 1 cut(s) 1934
Asp700I GAANNNNTTC 1 cut(s) 2799
Asp718I GGTACC 1 cut(s) 965
AspLEI GCGC 2 cut(s) 2094, 2677
AspS9I GGNCC 2 cut(s) 467, 3195
AsuC2I CCSGG 2 cut(s) 2518, 3092
AsuHPI GGTGA 5 cut(s) 1484, 2066, 2216, 2893, 3040
AsuII TTCGAA 1 cut(s) 3017
AvaI CYCGRG 3 cut(s) 2110, 2507, 2843
AvaII GGWCC 1 cut(s) 467
BaeI ACNNNNGTAYC 2 cut(s) 323, 356
BanI GGYRCC 1 cut(s) 965
BarI GAAGNNNNNNTAC 2 cut(s) 1347, 1379
BbsI GAAGAC 4 cut(s) 484, 815, 1385, 2345
Bbv12I GWGCWC 1 cut(s) 1743
BbvI GCAGC 9 cut(s) 105, 327, 330, 1108, 1758, 2413, 2837, 2961, 2964
BceAI ACGGC 3 cut(s) 1601, 2803, 3043
BciT130I CCWGG 3 cut(s) 385, 2310, 2669
BcnI CCSGG 2 cut(s) 2518, 3092
BcoDI GTCTC 2 cut(s) 1528, 2681
BfmI CTRYAG 1 cut(s) 1056
BfuAI ACCTGC 1 cut(s) 1037
BglII AGATCT 4 cut(s) 778, 1357, 2008, 2323
Bme1390I CCNGG 5 cut(s) 385, 2310, 2518, 2669, 3092
Bme18I GGWCC 1 cut(s) 467
BmeT110I CYCGRG 3 cut(s) 2110, 2507, 2843
BmgBI CACGTC 1 cut(s) 859
BmgT120I GGNCC 2 cut(s) 467, 3195
BmiI GGNNCC 2 cut(s) 381, 967
BmrFI CCNGG 5 cut(s) 385, 2310, 2518, 2669, 3092
BmsI GCATC 7 cut(s) 160, 1597, 1619, 1807, 1971, 2131, 2662
BoxI GACNNNNGTC 1 cut(s) 372
BpiI GAAGAC 4 cut(s) 484, 815, 1385, 2345
BplI GAGNNNNNCTC 2 cut(s) 15, 47
BpmI CTGGAG 2 cut(s) 413, 2261
Bpu14I TTCGAA 1 cut(s) 3017
BpuEI CTTGAG 6 cut(s) 320, 904, 1290, 1589, 2444, 2938
BpuMI CCSGG 2 cut(s) 2518, 3092
Bsa29I ATCGAT 1 cut(s) 685
BsaAI YACGTR 1 cut(s) 938
BsaI GGTCTC 1 cut(s) 2681
BsaJI CCNNGG 7 cut(s) 94, 383, 1988, 2508, 2517, 2842, 3091
BsaWI WCCGGW 2 cut(s) 76, 1526
BsaXI ACNNNNNCTCC 4 cut(s) 1508, 1538, 2397, 2427
Bsc4I CCNNNNNNNGG 6 cut(s) 605, 1994, 2663, 2810, 2969, 3107
Bse1I ACTGG 2 cut(s) 580, 2056
Bse3DI GCAATG 2 cut(s) 2723, 2837
BseAI TCCGGA 1 cut(s) 1526
BseBI CCWGG 3 cut(s) 385, 2310, 2669
BseCI ATCGAT 1 cut(s) 685
BseDI CCNNGG 7 cut(s) 94, 383, 1988, 2508, 2517, 2842, 3091
BseLI CCNNNNNNNGG 6 cut(s) 605, 1994, 2663, 2810, 2969, 3107
BseMI GCAATG 2 cut(s) 2723, 2837
BseMII CTCAG 5 cut(s) 202, 990, 1361, 2708, 2750
BseNI ACTGG 2 cut(s) 580, 2056
BseRI GAGGAG 4 cut(s) 25, 191, 2594, 2852
BseXI GCAGC 9 cut(s) 105, 327, 330, 1108, 1758, 2413, 2837, 2961, 2964
BseYI CCCAGC 1 cut(s) 113
Bsh1236I CGCG 3 cut(s) 73, 2094, 2279
BshFI GGCC 3 cut(s) 542, 2667, 3196
BshNI GGYRCC 1 cut(s) 965
BshVI ATCGAT 1 cut(s) 685
BsiHKAI GWGCWC 1 cut(s) 1743
BsiHKCI CYCGRG 3 cut(s) 2110, 2507, 2843
BsiSI CCGG 4 cut(s) 77, 1527, 2517, 3091
BslFI GGGAC 3 cut(s) 869, 1646, 2490
BslI CCNNNNNNNGG 6 cut(s) 605, 1994, 2663, 2810, 2969, 3107
BsmAI GTCTC 2 cut(s) 1528, 2681
BsmFI GGGAC 3 cut(s) 869, 1646, 2490
BsmI GAATGC 3 cut(s) 112, 1048, 2522
BsnI GGCC 3 cut(s) 542, 2667, 3196
Bso31I GGTCTC 1 cut(s) 2681
BsoBI CYCGRG 3 cut(s) 2110, 2507, 2843
Bsp119I TTCGAA 1 cut(s) 3017
Bsp1286I GDGCHC 1 cut(s) 1743
Bsp13I TCCGGA 1 cut(s) 1526
Bsp68I TCGCGA 1 cut(s) 2279
BspACI CCGC 9 cut(s) 111, 563, 749, 2025, 2094, 2295, 2370, 2729, 2764
BspANI GGCC 3 cut(s) 542, 2667, 3196
BspCNI CTCAG 5 cut(s) 201, 991, 1362, 2709, 2751
BspDI ATCGAT 1 cut(s) 685
BspEI TCCGGA 1 cut(s) 1526
BspFNI CGCG 3 cut(s) 73, 2094, 2279
BspLI GGNNCC 2 cut(s) 381, 967
BspMAI CTGCAG 1 cut(s) 1060
BspMI ACCTGC 1 cut(s) 1037
BspPI GGATC 3 cut(s) 885, 1055, 3133
BspT104I TTCGAA 1 cut(s) 3017
BspT107I GGYRCC 1 cut(s) 965
BspTNI GGTCTC 1 cut(s) 2681
BsrDI GCAATG 2 cut(s) 2723, 2837
BsrI ACTGG 2 cut(s) 580, 2056
BssECI CCNNGG 7 cut(s) 94, 383, 1988, 2508, 2517, 2842, 3091
BssNAI GTATAC 1 cut(s) 649
BssT1I CCWWGG 1 cut(s) 1988
Bst1107I GTATAC 1 cut(s) 649
Bst2UI CCWGG 3 cut(s) 385, 2310, 2669
Bst4CI ACNGT 7 cut(s) 1292, 1637, 2455, 2876, 3011, 3149, 3239
Bst6I CTCTTC 1 cut(s) 498
BstAPI GCANNNNNTGC 1 cut(s) 2737
BstBAI YACGTR 1 cut(s) 938
BstBI TTCGAA 1 cut(s) 3017
BstC8I GCNNGC 4 cut(s) 955, 1233, 2536, 3098
BstDEI CTNAG 9 cut(s) 188, 999, 1370, 1510, 1802, 2463, 2717, 2759, 2823
BstEII GGTNACC 1 cut(s) 2512
BstFNI CGCG 3 cut(s) 73, 2094, 2279
BstHHI GCGC 2 cut(s) 2094, 2677
BstMAI GTCTC 2 cut(s) 1528, 2681
BstMWI GCNNNNNNNGC 4 cut(s) 220, 1475, 1804, 2737
BstNI CCWGG 3 cut(s) 385, 2310, 2669
BstNSI RCATGY 8 cut(s) 233, 790, 957, 1034, 1448, 2135, 2168, 2740
BstPAI GACNNNNGTC 1 cut(s) 372
BstPI GGTNACC 1 cut(s) 2512
BstSCI CCNGG 5 cut(s) 383, 2308, 2516, 2667, 3090
BstSFI CTRYAG 1 cut(s) 1056
BstUI CGCG 3 cut(s) 73, 2094, 2279
BstV1I GCAGC 9 cut(s) 105, 327, 330, 1108, 1758, 2413, 2837, 2961, 2964
BstV2I GAAGAC 4 cut(s) 484, 815, 1385, 2345
BstX2I RGATCY 6 cut(s) 778, 877, 1060, 1357, 2008, 2323
BstXI CCANNNNNNTGG 2 cut(s) 391, 1239
BstYI RGATCY 6 cut(s) 778, 877, 1060, 1357, 2008, 2323
BstZ17I GTATAC 1 cut(s) 649
Bsu15I ATCGAT 1 cut(s) 685
BsuRI GGCC 3 cut(s) 542, 2667, 3196
BsuTUI ATCGAT 1 cut(s) 685
BtrI CACGTC 1 cut(s) 859
BtsI GCAGTG 1 cut(s) 2888
BtsIMutI CAGTG 4 cut(s) 1367, 1733, 2049, 2888
BtuMI TCGCGA 1 cut(s) 2279
BveI ACCTGC 1 cut(s) 1037
Cac8I GCNNGC 4 cut(s) 955, 1233, 2536, 3098
CfoI GCGC 2 cut(s) 2094, 2677
Cfr13I GGNCC 2 cut(s) 467, 3195
ClaI ATCGAT 1 cut(s) 685
CseI GACGC 3 cut(s) 62, 1934, 2911
Csp6I GTAC 8 cut(s) 332, 966, 1448, 1565, 1619, 1857, 2774, 2839
CviQI GTAC 8 cut(s) 332, 966, 1448, 1565, 1619, 1857, 2774, 2839
DdeI CTNAG 9 cut(s) 188, 999, 1370, 1510, 1802, 2463, 2717, 2759, 2823
Eam1104I CTCTTC 1 cut(s) 498
EarI CTCTTC 1 cut(s) 498
Eco130I CCWWGG 1 cut(s) 1988
Eco147I AGGCCT 1 cut(s) 2667
Eco31I GGTCTC 1 cut(s) 2681
Eco47I GGWCC 1 cut(s) 467
Eco57I CTGAAG 6 cut(s) 294, 1292, 1374, 1709, 1739, 2066
Eco88I CYCGRG 3 cut(s) 2110, 2507, 2843
Eco91I GGTNACC 1 cut(s) 2512
EcoO65I GGTNACC 1 cut(s) 2512
EcoRII CCWGG 3 cut(s) 383, 2308, 2667
EcoT14I CCWWGG 1 cut(s) 1988
EcoT22I ATGCAT 2 cut(s) 1494, 1612
ErhI CCWWGG 1 cut(s) 1988
FalI AAGNNNNNCTT 2 cut(s) 423, 455
FaqI GGGAC 3 cut(s) 869, 1646, 2490
FauNDI CATATG 1 cut(s) 1196
FblI GTMKAC 3 cut(s) 423, 648, 2890
GlaI GCGC 2 cut(s) 2093, 2676
GsaI CCCAGC 1 cut(s) 117
GsuI CTGGAG 2 cut(s) 413, 2261
HaeIII GGCC 3 cut(s) 542, 2667, 3196
HapII CCGG 4 cut(s) 77, 1527, 2517, 3091
HgaI GACGC 3 cut(s) 62, 1934, 2911
HhaI GCGC 2 cut(s) 2094, 2677
Hin6I GCGC 2 cut(s) 2092, 2675
HinP1I GCGC 2 cut(s) 2092, 2675
HincII GTYRAC 3 cut(s) 424, 816, 2926
HindII GTYRAC 3 cut(s) 424, 816, 2926
HindIII AAGCTT 3 cut(s) 1721, 2486, 2546
HpaII CCGG 4 cut(s) 77, 1527, 2517, 3091
HphI GGTGA 5 cut(s) 1484, 2066, 2216, 2893, 3040
Hpy99I CGWCG 2 cut(s) 428, 2216
HpyAV CCTTC 8 cut(s) 516, 980, 1045, 2148, 2607, 2756, 2801, 3101
HpyCH4III ACNGT 7 cut(s) 1292, 1637, 2455, 2876, 3011, 3149, 3239
HpyCH4IV ACGT 7 cut(s) 673, 812, 858, 937, 1147, 1877, 3166
HpyF10VI GCNNNNNNNGC 4 cut(s) 220, 1475, 1804, 2737
HpyF3I CTNAG 9 cut(s) 188, 999, 1370, 1510, 1802, 2463, 2717, 2759, 2823
HpySE526I ACGT 7 cut(s) 673, 812, 858, 937, 1147, 1877, 3166
HspAI GCGC 2 cut(s) 2092, 2675
Kpn2I TCCGGA 1 cut(s) 1526
KpnI GGTACC 1 cut(s) 969
LmnI GCTCC 3 cut(s) 23, 126, 1746
Lsp1109I GCAGC 9 cut(s) 105, 327, 330, 1108, 1758, 2413, 2837, 2961, 2964
LweI GCATC 7 cut(s) 160, 1597, 1619, 1807, 1971, 2131, 2662
MaeII ACGT 7 cut(s) 673, 812, 858, 937, 1147, 1877, 3166
MaeIII GTNAC 9 cut(s) 751, 767, 928, 1051, 1839, 2134, 2204, 2512, 3143
MfeI CAATTG 2 cut(s) 600, 1386
MflI RGATCY 6 cut(s) 778, 877, 1060, 1357, 2008, 2323
MhlI GDGCHC 1 cut(s) 1743
MlyI GAGTC 7 cut(s) 210, 515, 672, 1104, 1553, 1594, 2991
MmeI TCCRAC 5 cut(s) 237, 1378, 1527, 2275, 2298
Mph1103I ATGCAT 2 cut(s) 1494, 1612
MroI TCCGGA 1 cut(s) 1526
MroXI GAANNNNTTC 1 cut(s) 2799
MslI CAYNNNNRTG 2 cut(s) 246, 2169
MspA1I CMGCKG 1 cut(s) 113
MspI CCGG 4 cut(s) 77, 1527, 2517, 3091
MspR9I CCNGG 5 cut(s) 385, 2310, 2518, 2669, 3092
MunI CAATTG 2 cut(s) 600, 1386
Mva1269I GAATGC 3 cut(s) 112, 1048, 2522
MvaI CCWGG 3 cut(s) 385, 2310, 2669
MvnI CGCG 3 cut(s) 73, 2094, 2279
MwoI GCNNNNNNNGC 4 cut(s) 220, 1475, 1804, 2737
NciI CCSGG 2 cut(s) 2518, 3092
NdeI CATATG 1 cut(s) 1196
NlaIV GGNNCC 2 cut(s) 381, 967
NmuCI GTSAC 5 cut(s) 751, 928, 2134, 2204, 3143
NruI TCGCGA 1 cut(s) 2279
NsiI ATGCAT 2 cut(s) 1494, 1612
NspI RCATGY 8 cut(s) 233, 790, 957, 1034, 1448, 2135, 2168, 2740
NspV TTCGAA 1 cut(s) 3017
PaeI GCATGC 1 cut(s) 957
PaqCI CACCTGC 1 cut(s) 1037
PceI AGGCCT 1 cut(s) 2667
PciI ACATGT 2 cut(s) 229, 1444
PcsI WCGNNNNNNNCGW 3 cut(s) 366, 651, 2488
PctI GAATGC 3 cut(s) 112, 1048, 2522
PdmI GAANNNNTTC 1 cut(s) 2799
PfeI GAWTC 9 cut(s) 305, 388, 397, 2281, 2428, 2582, 2795, 2954, 3070
PflFI GACNNNGTC 1 cut(s) 662
PleI GAGTC 7 cut(s) 209, 514, 671, 1104, 1553, 1593, 2991
PpsI GAGTC 7 cut(s) 209, 514, 671, 1104, 1553, 1593, 2991
Ppu21I YACGTR 1 cut(s) 938
PscI ACATGT 2 cut(s) 229, 1444
PshAI GACNNNNGTC 1 cut(s) 372
PshBI ATTAAT 1 cut(s) 1934
Psp1406I AACGTT 2 cut(s) 673, 3166
Psp6I CCWGG 3 cut(s) 383, 2308, 2667
PspEI GGTNACC 1 cut(s) 2512
PspFI CCCAGC 1 cut(s) 113
PspGI CCWGG 3 cut(s) 383, 2308, 2667
PspN4I GGNNCC 2 cut(s) 381, 967
PspPI GGNCC 2 cut(s) 467, 3195
PstI CTGCAG 1 cut(s) 1060
PsuI RGATCY 6 cut(s) 778, 877, 1060, 1357, 2008, 2323
PsyI GACNNNGTC 1 cut(s) 662
RruI TCGCGA 1 cut(s) 2279
RsaI GTAC 8 cut(s) 333, 967, 1449, 1566, 1620, 1858, 2775, 2840
RsaNI GTAC 8 cut(s) 332, 966, 1448, 1565, 1619, 1857, 2774, 2839
RseI CAYNNNNRTG 2 cut(s) 246, 2169
SalI GTCGAC 1 cut(s) 422
Sau96I GGNCC 2 cut(s) 467, 3195
SchI GAGTC 7 cut(s) 210, 515, 672, 1104, 1553, 1594, 2991
ScrFI CCNGG 5 cut(s) 385, 2310, 2518, 2669, 3092
SduI GDGCHC 1 cut(s) 1743
SfaNI GCATC 7 cut(s) 160, 1597, 1619, 1807, 1971, 2131, 2662
SfcI CTRYAG 1 cut(s) 1056
SfuI TTCGAA 1 cut(s) 3017
SinI GGWCC 1 cut(s) 467
SmiMI CAYNNNNRTG 2 cut(s) 246, 2169
SmlI CTYRAG 6 cut(s) 335, 883, 1305, 1568, 2423, 2917
SmoI CTYRAG 6 cut(s) 335, 883, 1305, 1568, 2423, 2917
SphI GCATGC 1 cut(s) 957
SseBI AGGCCT 1 cut(s) 2667
SsiI CCGC 9 cut(s) 111, 563, 749, 2025, 2094, 2295, 2370, 2729, 2764
SspI AATATT 3 cut(s) 1162, 1182, 2125
StuI AGGCCT 1 cut(s) 2667
StyD4I CCNGG 5 cut(s) 383, 2308, 2516, 2667, 3090
StyI CCWWGG 1 cut(s) 1988
TaaI ACNGT 7 cut(s) 1292, 1637, 2455, 2876, 3011, 3149, 3239
TaiI ACGT 7 cut(s) 676, 815, 861, 940, 1150, 1880, 3169
TatI WGTACW 1 cut(s) 1856
TauI GCSGC 3 cut(s) 113, 2298, 2731
TfiI GAWTC 9 cut(s) 305, 388, 397, 2281, 2428, 2582, 2795, 2954, 3070
TscAI CASTG 4 cut(s) 1374, 1733, 2056, 2888
TseFI GTSAC 5 cut(s) 751, 928, 2134, 2204, 3143
TseI GCWGC 9 cut(s) 118, 315, 318, 1121, 1771, 2401, 2850, 2974, 2977
Tsp45I GTSAC 5 cut(s) 751, 928, 2134, 2204, 3143
TspGWI ACGGA 2 cut(s) 1053, 3131
TspRI CASTG 4 cut(s) 1374, 1733, 2056, 2888
Tth111I GACNNNGTC 1 cut(s) 662
VpaK11BI GGWCC 1 cut(s) 467
VspI ATTAAT 1 cut(s) 1934
XapI RAATTY 4 cut(s) 710, 827, 862, 2641
XbaI TCTAGA 2 cut(s) 197, 781
XceI RCATGY 8 cut(s) 233, 790, 957, 1034, 1448, 2135, 2168, 2740
XcmI CCANNNNNNNNNTGG 1 cut(s) 493
XmiI GTMKAC 3 cut(s) 423, 648, 2890
XmnI GAANNNNTTC 1 cut(s) 2799
Zsp2I ATGCAT 2 cut(s) 1494, 1612
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.