Rh1DG033900

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
Physical Location & Seq
Forward (+)
4957931 .. 4963516
5586 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG033900.1

Sequence Viewer

Length: 2145 bp
ATGCTGTTCTTTTTTTTTTTCCCTCAAATTCATCTTTGTTTTGTAATTAAAGGGGAAAAAAAAAATAAACACGCCATATCAAGAACAAACCCAGGTTTCAATATTCCTGCCTCGTTGTTCCGATTATCTTTGCGTTTCCTGCCTAACCAAGAAGCCATGGCCGTTGAATTAGCGGGTGGATCTCTTCTATCCTCTTTTCTGTCTGTGTTGTTGGATGAAATTGCTTCTGTTGAGTTGGTTGACTTTATTCAGAGTCAGAAAAAAACACCTGGGCTGCTCAAAAAGTTGGAGATGGAGTTGCTGGCAGTCGATGAAGTGGTCGATCATGCTGAGGAGAGGCAGATCAGAGATTCAGCTGTGAGGGATTGGCTTGACGAGCTTACAGACACTCTCTGTCATGCTGAGGACCTGCTCGATGAGATCCGGACAGAGGCTCTGCGACGCAAGCTGGAAGGAGGTATATCTGGAGAGAGCAGCGCAATTCCTTTTGTGATTCCTGGTATTGACAGAAAGCTTGTAGGTATTGTTGAAAGATTAGATTTTATTTTGAACCGAATGGCGGCACTTGCTTTGAAAATCCGTGGCGTTAAAGATAGACCACGAGCAAGACTATCCACAGTTCCTCCTGTGGTAGAAGAAGGCTCTGGCATCTATGGAAGGGAAGAGGAGAAGGAGGCCATCATTAGATTGTTGCTGTCAGCTGATGAGACAGTTTATGGGATTGGTGTCATTCCTATTGTCGGCATGGGTGGGATCGGTAAAACAACCCTTGCTCAGCTTGTGTACAACGATGCCAGAGTGAAGGAAGAGTTTCATCCCCGAGTTTGGGTTTCTCTTTCGCGTGGTTTTGATATTGTTAGAATAACACGGTCGATCTATGGGTCTATTTGTTCTCAAGCTTGTTTTAACACTAATTTGGATCTACTTCAATCTAAATTGAAAGCTGCTTTGGCTGGAAAGAAGTTTCTCCTTGTTCTTGATGATGTTTGGAATAGGAATTATAATCAGTTGGAGTTCTTGAGAAGGCCGTTGGAATTTGGAGCACAAGGAAGTAAAATAATTGTCACAACACGGGATGAAAATGCTGCACATTTGATGGGTAGTCTTGAAGCTCACTGTCTAATGCCATTATCTGAGGAAGATTGCTGGAAACTGTTTCCAGTGGGTGCAGATCCACATCTTGAAGTAATCGGAAAACAAATTTCGATCAAGTGTAGGGGTCTTCCCTTGGCTGCAAAATCACTTGGAGGTCTTTTACGCTCTGAACTGAATCGGAAACAATGGGAGATGATATTGAACAGTGACATATGGGACTTAACAGTAGAGAGCGACATTCTGCCTGCTCTATGGTTGAGCTATTGCTATCTACCTTCACATCTCAAGCGTTGCTTTGCCTATTGTTCCATATTTCCCAGAGGTTACCAGTTTACAAAATCAGAATTGGTATCGTTATGGATGGCTGAAGGTCTCTTACCACCTAGTAAGAGCAAAACGATGGAACAAGTTGGAGATGACTACTTCCACCTTCTAATCTCAAGGTCATTTTTTCAACATTCAGATCCTTATAATCAATCATTGTTCACCATGCATGATCTCATTAGTGATTTGGCAATGTTTCTATCGGGAGAGTTTTCTGTTAGGCTTGAGGAGGGTGGTGATTCACTCACCATTGCAAGAAAGACTCGTCATTTTTCCTACATGAAAAGTTACGTTACAGAAGAGAAACTTGAGGGTTTATATAATGCCAGATATTTGCGCACCTTCCTATCAATCCCACAGAATTCCGGTACCTCAGACTTTCGCATGTCGAGTAAGGTACTACAGAATCTATTGACAACATTACAATGCTTGAGAGTGCTTAATTTATCAGGATATGATATCAAAGAGTTGCCTGATTCAGTAAGCAGCTTGAAACATCTGAGACAGCTGGTGTTGTCTGGCAGTTCAATTGAGAAGTTGCCCAACTCAATTTGTACTTTATATAATTTACAAACATTGTTGTTGAGTTATTGTGAAAAACTAGTTGAGTTACCAACTGATTTGGGGAACCTGATCAACTTGCGCCATCTTGATATCAAAGGGACAAAGTTAAAGAAGATGCCACCGTATATGGGTAAGCTGAAGGATCTGCAATTAATTAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

714

Amino Acids

80.65

Weight (kDa)

6.95

Isoelectric Point (pI)

40.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 66 - 151 3.2e-17 Rx N-terminal domain
NB-ARC PF00931 221 - 386 5.2e-33 NB-ARC domain
WHD_DRP PF23559 469 - 537 8.3e-25 Disease resistance protein Winged helix domain
LRR_14 PF23598 610 - 674 1.9e-09 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000035)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G14470 AT3G14470
fragaria_vesca FvH4_1g01220 FvH4_1g01230 FvH4_3g24551 FvH4_3g24552 FvH4_4g29310 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_6g39860 FvH4_6g39861 FvH4_7g11380
malus_domestica MD00G1072900.v1.1 MD00G1073100.v1.1 MD00G1120600.v1.1 MD00G1120900.v1.1 MD00G1121000.v1.1 MD00G1121200.v1.1 MD00G1152300.v1.1 MD00G1203600.v1.1 MD00G1203700.v1.1 MD02G1250900.v1.1 MD02G1251900.v1.1 MD02G1252800.v1.1 MD02G1277100.v1.1 MD02G1277200.v1.1 MD02G1277400.v1.1 MD02G1286100.v1.1 MD02G1286200.v1.1 MD02G1286900.v1.1 MD03G1006200.v1.1 MD03G1015300.v1.1 MD03G1015500.v1.1 MD03G1015900.v1.1 MD03G1016000.v1.1 MD03G1024900.v1.1 MD03G1025000.v1.1 MD03G1025500.v1.1 MD03G1026000.v1.1 MD03G1026500.v1.1 MD03G1031800.v1.1 MD03G1072200.v1.1 MD07G1028000.v1.1 MD07G1028300.v1.1 MD07G1029400.v1.1 MD07G1029500.v1.1 MD07G1040300.v1.1 MD07G1044500.v1.1 MD07G1045100.v1.1 MD07G1045500.v1.1 MD07G1050700.v1.1 MD07G1050900.v1.1 MD07G1055800.v1.1 MD07G1056200.v1.1 MD07G1056600.v1.1 MD07G1057100.v1.1 MD07G1057200.v1.1 MD08G1056500.v1.1 MD08G1056600.v1.1 MD08G1056700.v1.1 MD08G1056800.v1.1 MD08G1128800.v1.1 MD08G1129500.v1.1 MD08G1130000.v1.1 MD11G1066700.v1.1 MD11G1066800.v1.1 MD11G1066900.v1.1 MD11G1067000.v1.1 MD11G1067500.v1.1 MD11G1069800.v1.1 MD11G1070400.v1.1 MD11G1071100.v1.1 MD11G1071200.v1.1 MD11G1077200.v1.1 MD11G1077700.v1.1 MD11G1077900.v1.1 MD11G1078100.v1.1 MD11G1078300.v1.1 MD11G1078500.v1.1 MD11G1135200.v1.1 MD11G1135400.v1.1 MD11G1152900.v1.1 MD11G1153000.v1.1 MD17G1056800.v1.1
prunus_persica Prupe.2G037800_v2.0.a1 Prupe.2G037800_v2.0.a1 Prupe.2G037800_v2.0.a1 Prupe.2G037800_v2.0.a1 Prupe.2G040500_v2.0.a1 Prupe.2G040700_v2.0.a1 Prupe.2G043000_v2.0.a1 Prupe.2G043100_v2.0.a1 Prupe.2G043200_v2.0.a1 Prupe.2G046000_v2.0.a1 Prupe.2G046300_v2.0.a1 Prupe.2G046400_v2.0.a1 Prupe.2G046400_v2.0.a1 Prupe.2G046700_v2.0.a1 Prupe.2G046900_v2.0.a1 Prupe.2G051100_v2.0.a1 Prupe.2G052200_v2.0.a1 Prupe.2G053600_v2.0.a1 Prupe.2G053600_v2.0.a1 Prupe.2G053600_v2.0.a1 Prupe.2G053600_v2.0.a1 Prupe.2G053700_v2.0.a1 Prupe.2G053800_v2.0.a1 Prupe.2G053900_v2.0.a1 Prupe.2G054000_v2.0.a1 Prupe.2G054100_v2.0.a1 Prupe.2G054200_v2.0.a1 Prupe.2G054300_v2.0.a1 Prupe.2G054300_v2.0.a1 Prupe.2G054300_v2.0.a1 Prupe.2G054300_v2.0.a1 Prupe.2G054500_v2.0.a1 Prupe.2G054700_v2.0.a1 Prupe.4G286000_v2.0.a1 Prupe.4G286000_v2.0.a1 Prupe.4G286000_v2.0.a1 Prupe.6G129800_v2.0.a1 Prupe.6G130000_v2.0.a1 Prupe.6G130000_v2.0.a1
pyrus_communis pycom02g23740 pycom02g23750 pycom02g24320 pycom03g00620 pycom03g01280 pycom03g01320 pycom03g01350 pycom03g01360 pycom03g01370 pycom03g01380 pycom03g01390 pycom03g02160 pycom03g02170 pycom03g05850 pycom03g09810 pycom07g02120 pycom07g02790 pycom07g02800 pycom07g03210 pycom07g03660 pycom07g03670 pycom07g04350 pycom08g10780 pycom08g10840 pycom08g10910 pycom11g05650 pycom11g05670 pycom11g05800 pycom11g05880 pycom11g05890 pycom11g05940 pycom11g06490 pycom11g06500 pycom11g06520 pycom11g06560 pycom11g06570 pycom11g11230 pycom11g13650 pycom17g05700
rosa_chinensis RchiOBHm_Chr1g0318341 RchiOBHm_Chr1g0318901 RchiOBHm_Chr1g0318931 RchiOBHm_Chr1g0327301 RchiOBHm_Chr1g0328491 RchiOBHm_Chr1g0336761 RchiOBHm_Chr1g0336831 RchiOBHm_Chr1g0340721 RchiOBHm_Chr1g0342461 RchiOBHm_Chr1g0342471 RchiOBHm_Chr1g0342481 RchiOBHm_Chr1g0346131 RchiOBHm_Chr1g0346191 RchiOBHm_Chr1g0346211 RchiOBHm_Chr1g0346241 RchiOBHm_Chr1g0346261 RchiOBHm_Chr1g0346281 RchiOBHm_Chr1g0346461 RchiOBHm_Chr1g0346471 RchiOBHm_Chr1g0346481 RchiOBHm_Chr1g0346501 RchiOBHm_Chr1g0347691 RchiOBHm_Chr1g0347701 RchiOBHm_Chr1g0347751 RchiOBHm_Chr1g0347791 RchiOBHm_Chr1g0347971 RchiOBHm_Chr1g0349661 RchiOBHm_Chr1g0349741 RchiOBHm_Chr1g0357561 RchiOBHm_Chr3g0492601 RchiOBHm_Chr5g0039181 RchiOBHm_Chr5g0039231 RchiOBHm_Chr5g0039241 RchiOBHm_Chr5g0039251 RchiOBHm_Chr5g0039531 RchiOBHm_Chr5g0044001 RchiOBHm_Chr5g0044571 RchiOBHm_Chr5g0044611 RchiOBHm_Chr5g0044631 RchiOBHm_Chr5g0044641 RchiOBHm_Chr5g0044651 RchiOBHm_Chr5g0044661 RchiOBHm_Chr5g0044681 RchiOBHm_Chr5g0045221 RchiOBHm_Chr5g0045901 RchiOBHm_Chr5g0045991 RchiOBHm_Chr5g0046001 RchiOBHm_Chr5g0046011
rosa_laevigata RLG00000028715 RLG00000028718 RLG00000029034 RLG00000029926 RLG00000030516 RLG00000034285 RLG00000034288
rosa_multiflora Rmu_co7987576.1_g000001 Rmu_co8028038.1_g000001 Rmu_co8104858.1_g000001 Rmu_co8185828.1_g000001 Rmu_co8227651.1_g000001 Rmu_co8235061.1_g000001 Rmu_co8246845.1_g000001 Rmu_co8254315.1_g000001 Rmu_co8284899.1_g000001 Rmu_co8401461.1_g000001 Rmu_co8475625.1_g000001 Rmu_co8502681.1_g000001 Rmu_sc0000250.1_g000005 Rmu_sc0000492.1_g000001 Rmu_sc0000533.1_g000004 Rmu_sc0000795.1_g000114 Rmu_sc0000831.1_g000039 Rmu_sc0000907.1_g000014 Rmu_sc0000907.1_g000034 Rmu_sc0001035.1_g000007 Rmu_sc0001035.1_g000011 Rmu_sc0001035.1_g000012 Rmu_sc0001099.1_g000003 Rmu_sc0001157.1_g000008 Rmu_sc0001212.1_g000016 Rmu_sc0001212.1_g000017 Rmu_sc0001304.1_g000027 Rmu_sc0001304.1_g000033 Rmu_sc0001773.1_g000019 Rmu_sc0001836.1_g000069 Rmu_sc0001856.1_g000004 Rmu_sc0002286.1_g000003 Rmu_sc0002286.1_g000004 Rmu_sc0002286.1_g000005 Rmu_sc0002286.1_g000007 Rmu_sc0002286.1_g000015 Rmu_sc0002495.1_g000025 Rmu_sc0002545.1_g000008 Rmu_sc0002545.1_g000009 Rmu_sc0002662.1_g000009 Rmu_sc0003363.1_g000019 Rmu_sc0003363.1_g000022 Rmu_sc0003600.1_g000057 Rmu_sc0003809.1_g000036 Rmu_sc0003809.1_g000037 Rmu_sc0005008.1_g000026 Rmu_sc0005008.1_g000028 Rmu_sc0005028.1_g000001 Rmu_sc0005144.1_g000022 Rmu_sc0005167.1_g000004 Rmu_sc0005626.1_g000005 Rmu_sc0005626.1_g000018 Rmu_sc0006228.1_g000011 Rmu_sc0006609.1_g000007 Rmu_sc0006609.1_g000009 Rmu_sc0006609.1_g000015 Rmu_sc0006609.1_g000016 Rmu_sc0006609.1_g000017 Rmu_sc0006609.1_g000018 Rmu_sc0007060.1_g000003 Rmu_sc0007318.1_g000011 Rmu_sc0007992.1_g000002 Rmu_sc0009172.1_g000001 Rmu_sc0010151.1_g000010 Rmu_sc0010151.1_g000011 Rmu_sc0011778.1_g000001 Rmu_sc0011778.1_g000005 Rmu_sc0011778.1_g000009 Rmu_sc0012293.1_g000001 Rmu_sc0012293.1_g000002 Rmu_sc0016606.1_g000001 Rmu_sc0016836.1_g000001 Rmu_sc0021084.1_g000008 Rmu_sc0021449.1_g000001 Rmu_sc0026523.1_g000001 Rmu_sc0027133.1_g000003 Rmu_sc0038674.1_g000001 Rmu_ssc0000255.1_g000053 Rmu_ssc0000255.1_g000063 Rmu_ssc0000255.1_g000064 Rmu_ssc0000263.1_g000004 Rmu_ssc0000400.1_g000027
rosa_roxburghii Rroxscaffold_1G00035290 Rroxscaffold_1G00036350 Rroxscaffold_1G00036360 Rroxscaffold_1G00036400 Rroxscaffold_1G00036460 Rroxscaffold_1G00037000 Rroxscaffold_1G00040440 Rroxscaffold_1G00041890 Rroxscaffold_1G00041920 Rroxscaffold_4G00307460 Rroxscaffold_4G00307500 Rroxscaffold_4G00308500 Rroxscaffold_4G00308510 Rroxscaffold_4G00308770 Rroxscaffold_4G00313020 Rroxscaffold_4G00321580 Rroxscaffold_4G00323030 Rroxscaffold_4G00326850 Rroxscaffold_4G00328770 Rroxscaffold_4G00328780 Rroxscaffold_4G00329310 Rroxscaffold_5G00352110
rosa_rugosa Rorug01G0020700 Rorug01G0023000 Rorug01G0023100 Rorug01G0023200 Rorug01G0023300 Rorug01G0023400 Rorug01G0024500 Rorug01G0025100 Rorug01G0025200 Rorug01G0025400 Rorug01G0025400 Rorug01G0064700 Rorug01G0065300 Rorug01G0127600 Rorug01G0128000 Rorug01G0148000.1 Rorug01G0150500.1 Rorug01G0161600.1 Rorug01G0161800.1 Rorug01G0163600.1 Rorug01G0178300 Rorug01G0178500 Rorug01G0178700 Rorug01G0179900 Rorug01G0180200 Rorug01G0180300 Rorug01G0180400 Rorug01G0189000 Rorug01G0189100 Rorug01G0190500 Rorug01G0204800 Rorug05G0177200 Rorug05G0210300 Rorug05G0210300 Rorug05G0210300 Rorug05G0215400 Rorug05G0215400 Rorug05G0215400 Rorug05G0215400 Rorug05G0215500 Rorug05G0215600 Rorug05G0215800 Rorug05G0215900 Rorug05G0215900 Rorug05G0216000 Rorug05G0216200 Rorug05G0216300 Rorug05G0221900 Rorug07G0276700
rosa_samantha Rh1BG028400 Rh1BG033500 Rh1BG065100 Rh1BG073100 Rh1BG073200 Rh1BG117000 Rh1BG164000 Rh1BG164200 Rh1BG172100 Rh1BG173900 Rh1BG174100 Rh1BG188400 Rh1CG036000 Rh1CG036500 Rh1CG089900 Rh1CG140200 Rh1CG164700 Rh1CG182600 Rh1CG182900 Rh1CG183400 Rh1CG191300 Rh1CG192000 Rh1CG207700 Rh1DG033800 Rh1DG033900 Rh1DG096000 Rh5AG299900 Rh5AG304500 Rh5AG307100 Rh5AG307500 Rh5CG301600 Rh5CG329800 Rh5CG333800 Rh5DG311400 Rh5DG316300 Rh5DG316400 Rh5DG316700 Rh5DG316800 Rh5DG316900 Rh5DG326100 Rh7AG431900 Rh7CG451000
rosa_wichuraiana Rw0G007840 Rw0G009850 Rw0G013000 Rw0G015090 Rw0G021190 Rw1G002610 Rw1G004320 Rw1G006520 Rw1G007250 Rw1G012020 Rw1G013830 Rw1G014770 Rw1G016300 Rw1G016600 Rw1G016650 Rw1G017290 Rw1G017420 Rw1G017630 Rw1G017650 Rw1G017660 Rw1G017690 Rw1G017700 Rw1G018960 Rw5G024660 Rw5G024700 Rw5G024720 Rw5G024740 Rw5G024980 Rw5G027710 Rw5G027720 Rw5G027730 Rw5G027740 Rw5G027750 Rw5G028130 Rw5G028740 Rw5G028750 Rw5G028790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1002, 1566
Acc16I TGCGCA 1 cut(s) 1757
Acc36I ACCTGC 1 cut(s) 417
Acc65I GGTACC 1 cut(s) 1787
AccB1I GGYRCC 1 cut(s) 1787
AccII CGCG 1 cut(s) 841
AccIII TCCGGA 1 cut(s) 423
AciI CCGC 2 cut(s) 173, 560
AclWI GGATC 7 cut(s) 187, 415, 761, 927, 1166, 1553, 2133
AcoI YGGCCR 1 cut(s) 159
AcsI RAATTY 4 cut(s) 27, 1034, 1200, 1780
AcuI CTGAAG 2 cut(s) 1482, 2141
AfaI GTAC 4 cut(s) 785, 1789, 1818, 1975
AfiI CCNNNNNNNGG 6 cut(s) 430, 559, 740, 825, 826, 2111
AhlI ACTAGT 1 cut(s) 2020
AjnI CCWGG 3 cut(s) 91, 268, 496
AjuI GAANNNNNNNTTGG 2 cut(s) 932, 964
Alw21I GWGCWC 1 cut(s) 1045
Alw26I GTCTC 3 cut(s) 701, 1472, 1915
AlwI GGATC 7 cut(s) 187, 415, 761, 927, 1166, 1553, 2133
Ama87I CYCGRG 1 cut(s) 819
Aor13HI TCCGGA 1 cut(s) 423
AoxI GGCC 3 cut(s) 159, 675, 1025
ApeKI GCWGC 6 cut(s) 274, 474, 944, 1085, 1232, 1905
ApoI RAATTY 4 cut(s) 27, 1034, 1200, 1780
AseI ATTAAT 1 cut(s) 2135
Asp700I GAANNNNTTC 1 cut(s) 810
Asp718I GGTACC 1 cut(s) 1787
AspLEI GCGC 3 cut(s) 479, 1758, 2064
AspS9I GGNCC 1 cut(s) 406
AsuHPI GGTGA 3 cut(s) 1573, 1657, 1667
AvaI CYCGRG 1 cut(s) 819
AvaII GGWCC 1 cut(s) 406
BanI GGYRCC 1 cut(s) 1787
BarI GAAGNNNNNNTAC 2 cut(s) 1455, 1487
BauI CACGAG 1 cut(s) 600
BbsI GAAGAC 1 cut(s) 1214
Bbv12I GWGCWC 1 cut(s) 1045
BbvCI CCTCAGC 2 cut(s) 330, 402
BbvI GCAGC 6 cut(s) 261, 486, 931, 1072, 1219, 1917
BccI CCATC 6 cut(s) 286, 686, 1090, 1450, 1489, 2073
BceAI ACGGC 2 cut(s) 146, 1012
BciT130I CCWGG 3 cut(s) 93, 270, 498
BclI TGATCA 1 cut(s) 2052
BcoDI GTCTC 3 cut(s) 701, 1472, 1915
BcuI ACTAGT 1 cut(s) 2020
BfaI CTAG 2 cut(s) 1479, 2021
BfmI CTRYAG 1 cut(s) 1820
BfuAI ACCTGC 1 cut(s) 417
BisI GCNGC 7 cut(s) 275, 475, 561, 945, 1086, 1233, 1906
BlpI GCTNAGC 1 cut(s) 774
BlsI GCNGC 7 cut(s) 276, 476, 562, 946, 1087, 1234, 1907
Bme1390I CCNGG 3 cut(s) 93, 270, 498
Bme18I GGWCC 1 cut(s) 406
BmeT110I CYCGRG 1 cut(s) 819
BmgT120I GGNCC 1 cut(s) 406
BmiI GGNNCC 2 cut(s) 1789, 2048
BmrFI CCNGG 3 cut(s) 93, 270, 498
BmsI GCATC 3 cut(s) 657, 781, 2088
BpiI GAAGAC 1 cut(s) 1214
BpmI CTGGAG 1 cut(s) 486
Bpu10I CCTNAGC 2 cut(s) 330, 402
Bpu1102I GCTNAGC 1 cut(s) 774
BpuEI CTTGAG 7 cut(s) 879, 1039, 1364, 1519, 1664, 1748, 1870
BsaBI GATNNNNATC 1 cut(s) 1176
BsaI GGTCTC 1 cut(s) 1472
BsaJI CCNNGG 5 cut(s) 91, 156, 269, 580, 1227
BsaWI WCCGGW 2 cut(s) 423, 1784
BsaXI ACNNNNNCTCC 4 cut(s) 281, 311, 607, 637
Bsc4I CCNNNNNNNGG 6 cut(s) 430, 559, 740, 825, 826, 2111
Bse1I ACTGG 2 cut(s) 1160, 1423
Bse3DI GCAATG 2 cut(s) 1617, 1668
Bse8I GATNNNNATC 1 cut(s) 1176
BseAI TCCGGA 1 cut(s) 423
BseBI CCWGG 3 cut(s) 93, 270, 498
BseDI CCNNGG 5 cut(s) 91, 156, 269, 580, 1227
BseGI GGATG 4 cut(s) 220, 814, 1081, 1461
BseJI GATNNNNATC 1 cut(s) 1176
BseLI CCNNNNNNNGG 6 cut(s) 430, 559, 740, 825, 826, 2111
BseMI GCAATG 2 cut(s) 1617, 1668
BseMII CTCAG 6 cut(s) 321, 393, 788, 1125, 1806, 1910
BseNI ACTGG 2 cut(s) 1160, 1423
BseRI GAGGAG 3 cut(s) 347, 680, 1661
BseXI GCAGC 6 cut(s) 261, 486, 931, 1072, 1219, 1917
BsgI GTGCAG 2 cut(s) 1071, 1188
Bsh1236I CGCG 1 cut(s) 841
Bsh1285I CGRYCG 1 cut(s) 872
BshFI GGCC 3 cut(s) 161, 677, 1027
BshNI GGYRCC 1 cut(s) 1787
BsiEI CGRYCG 1 cut(s) 872
BsiHKAI GWGCWC 1 cut(s) 1045
BsiHKCI CYCGRG 1 cut(s) 819
BsiSI CCGG 2 cut(s) 424, 1785
BslFI GGGAC 2 cut(s) 1325, 2095
BslI CCNNNNNNNGG 6 cut(s) 430, 559, 740, 825, 826, 2111
BsmAI GTCTC 3 cut(s) 701, 1472, 1915
BsmFI GGGAC 2 cut(s) 1325, 2095
BsnI GGCC 3 cut(s) 161, 677, 1027
Bso31I GGTCTC 1 cut(s) 1472
BsoBI CYCGRG 1 cut(s) 819
Bsp1286I GDGCHC 1 cut(s) 1045
Bsp13I TCCGGA 1 cut(s) 423
Bsp1407I TGTACA 1 cut(s) 783
Bsp1720I GCTNAGC 1 cut(s) 774
Bsp19I CCATGG 1 cut(s) 156
BspACI CCGC 2 cut(s) 173, 560
BspANI GGCC 3 cut(s) 161, 677, 1027
BspCNI CTCAG 6 cut(s) 322, 394, 787, 1126, 1805, 1911
BspEI TCCGGA 1 cut(s) 423
BspFNI CGCG 1 cut(s) 841
BspLI GGNNCC 2 cut(s) 1789, 2048
BspMI ACCTGC 1 cut(s) 417
BspPI GGATC 7 cut(s) 187, 415, 761, 927, 1166, 1553, 2133
BspT107I GGYRCC 1 cut(s) 1787
BspTNI GGTCTC 1 cut(s) 1472
BsrDI GCAATG 2 cut(s) 1617, 1668
BsrGI TGTACA 1 cut(s) 783
BsrI ACTGG 2 cut(s) 1160, 1423
BssECI CCNNGG 5 cut(s) 91, 156, 269, 580, 1227
BssSI CACGAG 1 cut(s) 600
BssT1I CCWWGG 2 cut(s) 156, 1227
Bst2BI CACGAG 1 cut(s) 600
Bst2UI CCWGG 3 cut(s) 93, 270, 498
Bst4CI ACNGT 8 cut(s) 619, 712, 870, 1118, 1155, 1301, 1321, 2106
Bst6I CTCTTC 4 cut(s) 189, 657, 801, 1713
BstAUI TGTACA 1 cut(s) 783
BstC8I GCNNGC 3 cut(s) 303, 446, 1341
BstDEI CTNAG 6 cut(s) 330, 402, 774, 1134, 1792, 1919
BstDSI CCRYGG 2 cut(s) 156, 580
BstEII GGTNACC 1 cut(s) 1418
BstF5I GGATG 4 cut(s) 220, 814, 1081, 1461
BstFNI CGCG 1 cut(s) 841
BstHHI GCGC 3 cut(s) 479, 1758, 2064
BstMAI GTCTC 3 cut(s) 701, 1472, 1915
BstMCI CGRYCG 1 cut(s) 872
BstMWI GCNNNNNNNGC 5 cut(s) 139, 376, 445, 566, 950
BstNI CCWGG 3 cut(s) 93, 270, 498
BstNSI RCATGY 1 cut(s) 1807
BstPI GGTNACC 1 cut(s) 1418
BstSCI CCNGG 3 cut(s) 91, 268, 496
BstSFI CTRYAG 1 cut(s) 1820
BstUI CGCG 1 cut(s) 841
BstV1I GCAGC 6 cut(s) 261, 486, 931, 1072, 1219, 1917
BstV2I GAAGAC 1 cut(s) 1214
BstX2I RGATCY 6 cut(s) 179, 420, 919, 1171, 1558, 2125
BstYI RGATCY 6 cut(s) 179, 420, 919, 1171, 1558, 2125
BsuRI GGCC 3 cut(s) 161, 677, 1027
BtgI CCRYGG 2 cut(s) 156, 580
BtsCI GGATG 4 cut(s) 220, 814, 1081, 1461
BtsIMutI CAGTG 3 cut(s) 1114, 1167, 1306
BveI ACCTGC 1 cut(s) 417
Cac8I GCNNGC 3 cut(s) 303, 446, 1341
CfoI GCGC 3 cut(s) 479, 1758, 2064
Cfr13I GGNCC 1 cut(s) 406
CseI GACGC 1 cut(s) 450
Csp6I GTAC 4 cut(s) 784, 1788, 1817, 1974
CviAII CATG 8 cut(s) 157, 326, 398, 745, 1585, 1589, 1699, 1804
CviQI GTAC 4 cut(s) 784, 1788, 1817, 1974
DdeI CTNAG 6 cut(s) 330, 402, 774, 1134, 1792, 1919
EaeI YGGCCR 1 cut(s) 159
Eam1104I CTCTTC 4 cut(s) 189, 657, 801, 1713
EarI CTCTTC 4 cut(s) 189, 657, 801, 1713
Eco130I CCWWGG 2 cut(s) 156, 1227
Eco31I GGTCTC 1 cut(s) 1472
Eco32I GATATC 2 cut(s) 1879, 2074
Eco47I GGWCC 1 cut(s) 406
Eco57I CTGAAG 2 cut(s) 1482, 2141
Eco88I CYCGRG 1 cut(s) 819
Eco91I GGTNACC 1 cut(s) 1418
EcoO109I RGGNCCY 1 cut(s) 406
EcoO65I GGTNACC 1 cut(s) 1418
EcoRI GAATTC 1 cut(s) 1780
EcoRII CCWGG 3 cut(s) 91, 268, 496
EcoRV GATATC 2 cut(s) 1879, 2074
EcoT14I CCWWGG 2 cut(s) 156, 1227
EcoT22I ATGCAT 1 cut(s) 1590
ErhI CCWWGG 2 cut(s) 156, 1227
FaeI CATG 8 cut(s) 160, 329, 401, 748, 1588, 1592, 1702, 1807
FalI AAGNNNNNCTT 4 cut(s) 1373, 1405, 1710, 1742
FaqI GGGAC 2 cut(s) 1325, 2095
FatI CATG 8 cut(s) 156, 325, 397, 744, 1584, 1588, 1698, 1803
FauI CCCGC 1 cut(s) 166
FauNDI CATATG 1 cut(s) 1307
FbaI TGATCA 1 cut(s) 2052
Fnu4HI GCNGC 7 cut(s) 275, 475, 561, 945, 1086, 1233, 1906
FokI GGATG 4 cut(s) 227, 801, 1088, 1468
Fsp4HI GCNGC 7 cut(s) 275, 475, 561, 945, 1086, 1233, 1906
FspBI CTAG 2 cut(s) 1479, 2021
FspI TGCGCA 1 cut(s) 1757
GlaI GCGC 3 cut(s) 478, 1757, 2063
GluI GCNGC 7 cut(s) 275, 475, 561, 945, 1086, 1233, 1906
GsuI CTGGAG 1 cut(s) 486
HaeIII GGCC 3 cut(s) 161, 677, 1027
HapII CCGG 2 cut(s) 424, 1785
HgaI GACGC 1 cut(s) 450
HhaI GCGC 3 cut(s) 479, 1758, 2064
Hin1II CATG 8 cut(s) 160, 329, 401, 748, 1588, 1592, 1702, 1807
Hin6I GCGC 3 cut(s) 477, 1756, 2062
HinP1I GCGC 3 cut(s) 477, 1756, 2062
HincII GTYRAC 1 cut(s) 241
HindII GTYRAC 1 cut(s) 241
HindIII AAGCTT 2 cut(s) 512, 897
HinfI GANTC 8 cut(s) 253, 350, 493, 1270, 1658, 1681, 1825, 1895
HpaII CCGG 2 cut(s) 424, 1785
HphI GGTGA 3 cut(s) 1573, 1657, 1667
Hpy166II GTNNAC 4 cut(s) 241, 784, 1428, 1581
Hpy8I GTNNAC 4 cut(s) 241, 784, 1428, 1581
Hpy99I CGWCG 1 cut(s) 444
HpyCH4III ACNGT 8 cut(s) 619, 712, 870, 1118, 1155, 1301, 1321, 2106
HpyCH4IV ACGT 1 cut(s) 1710
HpyCH4V TGCA 6 cut(s) 1088, 1169, 1235, 1588, 1673, 2131
HpyF10VI GCNNNNNNNGC 5 cut(s) 139, 376, 445, 566, 950
HpyF3I CTNAG 6 cut(s) 330, 402, 774, 1134, 1792, 1919
HpySE526I ACGT 1 cut(s) 1710
Hsp92II CATG 8 cut(s) 160, 329, 401, 748, 1588, 1592, 1702, 1807
HspAI GCGC 3 cut(s) 477, 1756, 2062
Kpn2I TCCGGA 1 cut(s) 423
KpnI GGTACC 1 cut(s) 1791
Ksp22I TGATCA 1 cut(s) 2052
LmnI GCTCC 1 cut(s) 1040
Lsp1109I GCAGC 6 cut(s) 261, 486, 931, 1072, 1219, 1917
LweI GCATC 3 cut(s) 657, 781, 2088
MaeI CTAG 2 cut(s) 1479, 2021
MaeII ACGT 1 cut(s) 1710
MaeIII GTNAC 6 cut(s) 1063, 1301, 1418, 1706, 1711, 2028
MboII GAAGA 8 cut(s) 176, 647, 674, 818, 1151, 1214, 1730, 2107
MfeI CAATTG 1 cut(s) 1947
MflI RGATCY 6 cut(s) 179, 420, 919, 1171, 1558, 2125
MhlI GDGCHC 1 cut(s) 1045
MlyI GAGTC 2 cut(s) 262, 1675
MmeI TCCRAC 5 cut(s) 192, 267, 990, 1011, 1486
Mph1103I ATGCAT 1 cut(s) 1590
MroI TCCGGA 1 cut(s) 423
MroXI GAANNNNTTC 1 cut(s) 810
MseI TTAA 8 cut(s) 48, 588, 906, 1316, 1860, 2090, 2135, 2139
MslI CAYNNNNRTG 1 cut(s) 1843
MspA1I CMGCKG 3 cut(s) 356, 701, 1927
MspI CCGG 2 cut(s) 424, 1785
MspR9I CCNGG 3 cut(s) 93, 270, 498
MunI CAATTG 1 cut(s) 1947
MvaI CCWGG 3 cut(s) 93, 270, 498
MvnI CGCG 1 cut(s) 841
MwoI GCNNNNNNNGC 5 cut(s) 139, 376, 445, 566, 950
NcoI CCATGG 1 cut(s) 156
NdeI CATATG 1 cut(s) 1307
NlaIII CATG 8 cut(s) 160, 329, 401, 748, 1588, 1592, 1702, 1807
NlaIV GGNNCC 2 cut(s) 1789, 2048
NmuCI GTSAC 2 cut(s) 1063, 1301
NsbI TGCGCA 1 cut(s) 1757
NsiI ATGCAT 1 cut(s) 1590
NspI RCATGY 1 cut(s) 1807
PacI TTAATTAA 1 cut(s) 2139
PdmI GAANNNNTTC 1 cut(s) 810
PfeI GAWTC 6 cut(s) 350, 493, 1270, 1658, 1825, 1895
PkrI GCNGC 7 cut(s) 276, 476, 562, 946, 1087, 1234, 1907
PleI GAGTC 2 cut(s) 261, 1675
PpsI GAGTC 2 cut(s) 261, 1675
PpuMI RGGWCCY 1 cut(s) 406
PshBI ATTAAT 1 cut(s) 2135
PsiI TTATAA 2 cut(s) 1002, 1566
Psp5II RGGWCCY 1 cut(s) 406
Psp6I CCWGG 3 cut(s) 91, 268, 496
PspEI GGTNACC 1 cut(s) 1418
PspGI CCWGG 3 cut(s) 91, 268, 496
PspN4I GGNNCC 2 cut(s) 1789, 2048
PspPI GGNCC 1 cut(s) 406
PspPPI RGGWCCY 1 cut(s) 406
PsuI RGATCY 6 cut(s) 179, 420, 919, 1171, 1558, 2125
PvuII CAGCTG 3 cut(s) 356, 701, 1927
RsaI GTAC 4 cut(s) 785, 1789, 1818, 1975
RsaNI GTAC 4 cut(s) 784, 1788, 1817, 1974
RseI CAYNNNNRTG 1 cut(s) 1843
SaqAI TTAA 8 cut(s) 48, 588, 906, 1316, 1860, 2090, 2135, 2139
SatI GCNGC 7 cut(s) 275, 475, 561, 945, 1086, 1233, 1906
Sau96I GGNCC 1 cut(s) 406
SchI GAGTC 2 cut(s) 262, 1675
ScrFI CCNGG 3 cut(s) 93, 270, 498
SduI GDGCHC 1 cut(s) 1045
SfaNI GCATC 3 cut(s) 657, 781, 2088
SfcI CTRYAG 1 cut(s) 1820
SinI GGWCC 1 cut(s) 406
SmiMI CAYNNNNRTG 1 cut(s) 1843
SmlI CTYRAG 7 cut(s) 894, 1018, 1379, 1534, 1643, 1727, 1849
SmoI CTYRAG 7 cut(s) 894, 1018, 1379, 1534, 1643, 1727, 1849
SpeI ACTAGT 1 cut(s) 2020
SsiI CCGC 2 cut(s) 173, 560
SspI AATATT 1 cut(s) 103
SspMI CTAG 2 cut(s) 1479, 2021
StyD4I CCNGG 3 cut(s) 91, 268, 496
StyI CCWWGG 2 cut(s) 156, 1227
TaaI ACNGT 8 cut(s) 619, 712, 870, 1118, 1155, 1301, 1321, 2106
TaiI ACGT 1 cut(s) 1713
TaqI TCGA 6 cut(s) 309, 321, 414, 872, 1205, 1808
TatI WGTACW 2 cut(s) 783, 1973
TauI GCSGC 1 cut(s) 563
TfiI GAWTC 6 cut(s) 350, 493, 1270, 1658, 1825, 1895
Tru1I TTAA 8 cut(s) 48, 588, 906, 1316, 1860, 2090, 2135, 2139
Tru9I TTAA 8 cut(s) 48, 588, 906, 1316, 1860, 2090, 2135, 2139
TscAI CASTG 3 cut(s) 1121, 1167, 1306
TseFI GTSAC 2 cut(s) 1063, 1301
TseI GCWGC 6 cut(s) 274, 474, 944, 1085, 1232, 1905
Tsp45I GTSAC 2 cut(s) 1063, 1301
TspDTI ATGAA 6 cut(s) 20, 231, 327, 803, 1092, 1715
TspGWI ACGGA 1 cut(s) 569
TspRI CASTG 3 cut(s) 1121, 1167, 1306
VpaK11BI GGWCC 1 cut(s) 406
VspI ATTAAT 1 cut(s) 2135
XapI RAATTY 4 cut(s) 27, 1034, 1200, 1780
XceI RCATGY 1 cut(s) 1807
XmnI GAANNNNTTC 1 cut(s) 810
XspI CTAG 2 cut(s) 1479, 2021
Zsp2I ATGCAT 1 cut(s) 1590
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.