Belongs to the disease resistance NB-LRR family
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Rx_N | PF18052 | 11 - 101 | 7.2e-18 | Rx N-terminal domain |
| NB-ARC | PF00931 | 175 - 346 | 1.4e-36 | NB-ARC domain |
| WHD_DRP | PF23559 | 431 - 501 | 1.7e-23 | Disease resistance protein Winged helix domain |
| LRR_14 | PF23598 | 542 - 859 | 2.6e-33 | Leucine-rich repeat region |
| LRR_R13L1-DRL21 | PF25019 | 656 - 780 | 1.8e-37 | R13L1/DRL21 LRRs |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 1234, 1264 |
| Acc65I | GGTACC | 2 cut(s) | 325, 959 |
| AccB1I | GGYRCC | 2 cut(s) | 325, 959 |
| AccI | GTMKAC | 3 cut(s) | 642, 973, 2887 |
| AccII | CGCG | 1 cut(s) | 1998 |
| AccIII | TCCGGA | 1 cut(s) | 1514 |
| AciI | CCGC | 6 cut(s) | 111, 557, 743, 1577, 1998, 2729 |
| AclWI | GGATC | 3 cut(s) | 879, 1049, 1332 |
| AcsI | RAATTY | 8 cut(s) | 704, 821, 856, 1803, 2545, 2638, 2909, 3066 |
| AcuI | CTGAAG | 7 cut(s) | 294, 1286, 1368, 1613, 1643, 1970, 3187 |
| AcvI | CACGTG | 1 cut(s) | 932 |
| AfaI | GTAC | 9 cut(s) | 327, 961, 1403, 1583, 1593, 1661, 1762, 2598, 2840 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 114, 599, 1898, 2467, 2810, 2966, 3104 |
| AflII | CTTAAG | 1 cut(s) | 877 |
| AflIII | ACRYGT | 1 cut(s) | 929 |
| AjnI | CCWGG | 4 cut(s) | 377, 1039, 1544, 2212 |
| Alw21I | GWGCWC | 1 cut(s) | 1647 |
| Alw26I | GTCTC | 2 cut(s) | 1516, 2678 |
| AlwI | GGATC | 3 cut(s) | 879, 1049, 1332 |
| Ama87I | CYCGRG | 3 cut(s) | 329, 2014, 2411 |
| Aor13HI | TCCGGA | 1 cut(s) | 1514 |
| AoxI | GGCC | 1 cut(s) | 534 |
| ApeKI | GCWGC | 5 cut(s) | 118, 1115, 1675, 2305, 2850 |
| ApoI | RAATTY | 8 cut(s) | 704, 821, 856, 1803, 2545, 2638, 2909, 3066 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2702, 2734 |
| AseI | ATTAAT | 1 cut(s) | 1838 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 2490, 2580, 2799 |
| Asp718I | GGTACC | 2 cut(s) | 325, 959 |
| AspLEI | GCGC | 2 cut(s) | 1998, 2674 |
| AsuC2I | CCSGG | 1 cut(s) | 2422 |
| AsuHPI | GGTGA | 5 cut(s) | 1682, 2120, 2365, 2890, 3037 |
| AsuII | TTCGAA | 1 cut(s) | 3014 |
| AvaI | CYCGRG | 3 cut(s) | 329, 2014, 2411 |
| BaeGI | GKGCMC | 1 cut(s) | 2204 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 317, 350, 1548, 1581 |
| BanI | GGYRCC | 2 cut(s) | 325, 959 |
| BarI | GAAGNNNNNNTAC | 6 cut(s) | 1341, 1373, 2475, 2507, 2565, 2597 |
| BauI | CACGAG | 1 cut(s) | 2203 |
| BbrPI | CACGTG | 1 cut(s) | 932 |
| BbsI | GAAGAC | 4 cut(s) | 110, 478, 809, 1379 |
| Bbv12I | GWGCWC | 1 cut(s) | 1647 |
| BbvI | GCAGC | 5 cut(s) | 105, 1102, 1662, 2317, 2837 |
| BceAI | ACGGC | 3 cut(s) | 1564, 2803, 3040 |
| BciT130I | CCWGG | 4 cut(s) | 379, 1041, 1546, 2214 |
| BciVI | GTATCC | 1 cut(s) | 375 |
| BcnI | CCSGG | 1 cut(s) | 2422 |
| BcoDI | GTCTC | 2 cut(s) | 1516, 2678 |
| BfaI | CTAG | 6 cut(s) | 198, 504, 1415, 1680, 1943, 2235 |
| BfmI | CTRYAG | 2 cut(s) | 1050, 2592 |
| BfrI | CTTAAG | 1 cut(s) | 877 |
| BfuAI | ACCTGC | 2 cut(s) | 1234, 1264 |
| BfuI | GTATCC | 1 cut(s) | 375 |
| BglII | AGATCT | 2 cut(s) | 772, 1351 |
| BisI | GCNGC | 5 cut(s) | 119, 1116, 1676, 2306, 2851 |
| BlsI | GCNGC | 5 cut(s) | 120, 1117, 1677, 2307, 2852 |
| BmcAI | AGTACT | 2 cut(s) | 1403, 2598 |
| Bme1390I | CCNGG | 5 cut(s) | 379, 1041, 1546, 2214, 2422 |
| BmeT110I | CYCGRG | 3 cut(s) | 329, 2014, 2411 |
| BmiI | GGNNCC | 3 cut(s) | 327, 375, 961 |
| BmrFI | CCNGG | 5 cut(s) | 379, 1041, 1546, 2214, 2422 |
| BmrI | ACTGGG | 1 cut(s) | 2367 |
| BmsI | GCATC | 9 cut(s) | 160, 1462, 1467, 1497, 1711, 1875, 2019, 2035, 2077 |
| BmuI | ACTGGG | 1 cut(s) | 2367 |
| BoxI | GACNNNNGTC | 1 cut(s) | 366 |
| BpiI | GAAGAC | 4 cut(s) | 110, 478, 809, 1379 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 15, 47 |
| BpmI | CTGGAG | 1 cut(s) | 2165 |
| Bpu14I | TTCGAA | 1 cut(s) | 3014 |
| BpuEI | CTTGAG | 6 cut(s) | 1284, 2165, 2321, 2348, 2744, 2935 |
| BpuMI | CCSGG | 1 cut(s) | 2422 |
| BsaAI | YACGTR | 1 cut(s) | 932 |
| BsaI | GGTCTC | 1 cut(s) | 2678 |
| BsaJI | CCNNGG | 6 cut(s) | 94, 377, 1445, 1892, 2412, 3004 |
| BsaWI | WCCGGW | 3 cut(s) | 76, 1514, 3087 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1496, 1526 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 114, 599, 1898, 2467, 2810, 2966, 3104 |
| Bse1I | ACTGG | 6 cut(s) | 574, 1808, 1960, 2362, 2472, 2796 |
| Bse3DI | GCAATG | 1 cut(s) | 3202 |
| BseAI | TCCGGA | 1 cut(s) | 1514 |
| BseBI | CCWGG | 4 cut(s) | 379, 1041, 1546, 2214 |
| BseDI | CCNNGG | 6 cut(s) | 94, 377, 1445, 1892, 2412, 3004 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 114, 599, 1898, 2467, 2810, 2966, 3104 |
| BseMI | GCAATG | 1 cut(s) | 3202 |
| BseMII | CTCAG | 4 cut(s) | 202, 984, 1660, 2705 |
| BseNI | ACTGG | 6 cut(s) | 574, 1808, 1960, 2362, 2472, 2796 |
| BseRI | GAGGAG | 2 cut(s) | 191, 2591 |
| BseSI | GKGCMC | 1 cut(s) | 2204 |
| BseXI | GCAGC | 5 cut(s) | 105, 1102, 1662, 2317, 2837 |
| BseYI | CCCAGC | 1 cut(s) | 113 |
| BsgI | GTGCAG | 1 cut(s) | 1242 |
| Bsh1236I | CGCG | 1 cut(s) | 1998 |
| BshFI | GGCC | 1 cut(s) | 536 |
| BshNI | GGYRCC | 2 cut(s) | 325, 959 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1647 |
| BsiHKCI | CYCGRG | 3 cut(s) | 329, 2014, 2411 |
| BsiSI | CCGG | 4 cut(s) | 77, 1515, 2421, 3088 |
| BsiWI | CGTACG | 1 cut(s) | 1581 |
| BslFI | GGGAC | 3 cut(s) | 1581, 2394, 2437 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 114, 599, 1898, 2467, 2810, 2966, 3104 |
| BsmAI | GTCTC | 2 cut(s) | 1516, 2678 |
| BsmFI | GGGAC | 3 cut(s) | 1581, 2394, 2437 |
| BsmI | GAATGC | 1 cut(s) | 2674 |
| BsnI | GGCC | 1 cut(s) | 536 |
| Bso31I | GGTCTC | 1 cut(s) | 2678 |
| BsoBI | CYCGRG | 3 cut(s) | 329, 2014, 2411 |
| Bsp119I | TTCGAA | 1 cut(s) | 3014 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1647, 2204 |
| Bsp13I | TCCGGA | 1 cut(s) | 1514 |
| BspACI | CCGC | 6 cut(s) | 111, 557, 743, 1577, 1998, 2729 |
| BspANI | GGCC | 1 cut(s) | 536 |
| BspCNI | CTCAG | 4 cut(s) | 201, 985, 1659, 2706 |
| BspEI | TCCGGA | 1 cut(s) | 1514 |
| BspFNI | CGCG | 1 cut(s) | 1998 |
| BspHI | TCATGA | 1 cut(s) | 352 |
| BspLI | GGNNCC | 3 cut(s) | 327, 375, 961 |
| BspMI | ACCTGC | 2 cut(s) | 1234, 1264 |
| BspPI | GGATC | 3 cut(s) | 879, 1049, 1332 |
| BspQI | GCTCTTC | 1 cut(s) | 1920 |
| BspT104I | TTCGAA | 1 cut(s) | 3014 |
| BspT107I | GGYRCC | 2 cut(s) | 325, 959 |
| BspTI | CTTAAG | 1 cut(s) | 877 |
| BspTNI | GGTCTC | 1 cut(s) | 2678 |
| BsrDI | GCAATG | 1 cut(s) | 3202 |
| BsrI | ACTGG | 6 cut(s) | 574, 1808, 1960, 2362, 2472, 2796 |
| BssECI | CCNNGG | 6 cut(s) | 94, 377, 1445, 1892, 2412, 3004 |
| BssNAI | GTATAC | 1 cut(s) | 643 |
| BssSI | CACGAG | 1 cut(s) | 2203 |
| BssT1I | CCWWGG | 2 cut(s) | 1445, 1892 |
| Bst1107I | GTATAC | 1 cut(s) | 643 |
| Bst2BI | CACGAG | 1 cut(s) | 2203 |
| Bst2UI | CCWGG | 4 cut(s) | 379, 1041, 1546, 2214 |
| Bst4CI | ACNGT | 7 cut(s) | 853, 1286, 1381, 1788, 2596, 2873, 3008 |
| Bst6I | CTCTTC | 5 cut(s) | 40, 492, 1920, 2496, 2586 |
| BstAFI | CTTAAG | 1 cut(s) | 877 |
| BstBAI | YACGTR | 1 cut(s) | 932 |
| BstBI | TTCGAA | 1 cut(s) | 3014 |
| BstC8I | GCNNGC | 3 cut(s) | 949, 2440, 3095 |
| BstDSI | CCRYGG | 1 cut(s) | 3004 |
| BstEII | GGTNACC | 1 cut(s) | 2416 |
| BstFNI | CGCG | 1 cut(s) | 1998 |
| BstHHI | GCGC | 2 cut(s) | 1998, 2674 |
| BstMAI | GTCTC | 2 cut(s) | 1516, 2678 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 220, 1708, 2671, 2737, 3207 |
| BstNI | CCWGG | 4 cut(s) | 379, 1041, 1546, 2214 |
| BstNSI | RCATGY | 4 cut(s) | 784, 951, 2039, 2740 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 366 |
| BstPI | GGTNACC | 1 cut(s) | 2416 |
| BstSCI | CCNGG | 5 cut(s) | 377, 1039, 1544, 2212, 2420 |
| BstSFI | CTRYAG | 2 cut(s) | 1050, 2592 |
| BstSLI | GKGCMC | 1 cut(s) | 2204 |
| BstUI | CGCG | 1 cut(s) | 1998 |
| BstV1I | GCAGC | 5 cut(s) | 105, 1102, 1662, 2317, 2837 |
| BstV2I | GAAGAC | 4 cut(s) | 110, 478, 809, 1379 |
| BstX2I | RGATCY | 5 cut(s) | 772, 871, 1054, 1324, 1351 |
| BstYI | RGATCY | 5 cut(s) | 772, 871, 1054, 1324, 1351 |
| BstZ17I | GTATAC | 1 cut(s) | 643 |
| BsuI | GTATCC | 1 cut(s) | 375 |
| BsuRI | GGCC | 1 cut(s) | 536 |
| BtgI | CCRYGG | 1 cut(s) | 3004 |
| BtsI | GCAGTG | 1 cut(s) | 2885 |
| BtsIMutI | CAGTG | 5 cut(s) | 1361, 1637, 1953, 2465, 2885 |
| BveI | ACCTGC | 2 cut(s) | 1234, 1264 |
| Cac8I | GCNNGC | 3 cut(s) | 949, 2440, 3095 |
| CciI | TCATGA | 1 cut(s) | 352 |
| CfoI | GCGC | 2 cut(s) | 1998, 2674 |
| CseI | GACGC | 1 cut(s) | 1838 |
| Csp6I | GTAC | 9 cut(s) | 326, 960, 1402, 1582, 1592, 1660, 1761, 2597, 2839 |
| CviQI | GTAC | 9 cut(s) | 326, 960, 1402, 1582, 1592, 1660, 1761, 2597, 2839 |
| Eam1104I | CTCTTC | 5 cut(s) | 40, 492, 1920, 2496, 2586 |
| EarI | CTCTTC | 5 cut(s) | 40, 492, 1920, 2496, 2586 |
| EciI | GGCGGA | 1 cut(s) | 1566 |
| Eco130I | CCWWGG | 2 cut(s) | 1445, 1892 |
| Eco31I | GGTCTC | 1 cut(s) | 2678 |
| Eco57I | CTGAAG | 7 cut(s) | 294, 1286, 1368, 1613, 1643, 1970, 3187 |
| Eco72I | CACGTG | 1 cut(s) | 932 |
| Eco88I | CYCGRG | 3 cut(s) | 329, 2014, 2411 |
| Eco91I | GGTNACC | 1 cut(s) | 2416 |
| EcoO65I | GGTNACC | 1 cut(s) | 2416 |
| EcoRI | GAATTC | 3 cut(s) | 1803, 2909, 3066 |
| EcoRII | CCWGG | 4 cut(s) | 377, 1039, 1544, 2212 |
| EcoT14I | CCWWGG | 2 cut(s) | 1445, 1892 |
| EcoT22I | ATGCAT | 2 cut(s) | 1482, 2012 |
| ErhI | CCWWGG | 2 cut(s) | 1445, 1892 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 417, 449, 1013, 1045 |
| FaqI | GGGAC | 3 cut(s) | 1581, 2394, 2437 |
| FauNDI | CATATG | 1 cut(s) | 1190 |
| FblI | GTMKAC | 3 cut(s) | 642, 973, 2887 |
| Fnu4HI | GCNGC | 5 cut(s) | 119, 1116, 1676, 2306, 2851 |
| Fsp4HI | GCNGC | 5 cut(s) | 119, 1116, 1676, 2306, 2851 |
| FspBI | CTAG | 6 cut(s) | 198, 504, 1415, 1680, 1943, 2235 |
| GlaI | GCGC | 2 cut(s) | 1997, 2673 |
| GluI | GCNGC | 5 cut(s) | 119, 1116, 1676, 2306, 2851 |
| GsaI | CCCAGC | 1 cut(s) | 117 |
| GsuI | CTGGAG | 1 cut(s) | 2165 |
| HaeIII | GGCC | 1 cut(s) | 536 |
| HapII | CCGG | 4 cut(s) | 77, 1515, 2421, 3088 |
| HgaI | GACGC | 1 cut(s) | 1838 |
| HhaI | GCGC | 2 cut(s) | 1998, 2674 |
| Hin6I | GCGC | 2 cut(s) | 1996, 2672 |
| HinP1I | GCGC | 2 cut(s) | 1996, 2672 |
| HincII | GTYRAC | 3 cut(s) | 85, 418, 810 |
| HindII | GTYRAC | 3 cut(s) | 85, 418, 810 |
| HindIII | AAGCTT | 3 cut(s) | 1625, 2390, 2450 |
| HpaII | CCGG | 4 cut(s) | 77, 1515, 2421, 3088 |
| HphI | GGTGA | 5 cut(s) | 1682, 2120, 2365, 2890, 3037 |
| Hpy166II | GTNNAC | 9 cut(s) | 85, 418, 643, 810, 974, 1761, 2888, 2939, 3036 |
| Hpy8I | GTNNAC | 9 cut(s) | 85, 418, 643, 810, 974, 1761, 2888, 2939, 3036 |
| Hpy99I | CGWCG | 2 cut(s) | 1063, 2120 |
| HpyAV | CCTTC | 9 cut(s) | 510, 686, 932, 974, 1039, 1859, 2322, 2330, 2801 |
| HpyCH4III | ACNGT | 7 cut(s) | 853, 1286, 1381, 1788, 2596, 2873, 3008 |
| HpyCH4IV | ACGT | 6 cut(s) | 806, 931, 1141, 1594, 1781, 2841 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 220, 1708, 2671, 2737, 3207 |
| HpySE526I | ACGT | 6 cut(s) | 806, 931, 1141, 1594, 1781, 2841 |
| HspAI | GCGC | 2 cut(s) | 1996, 2672 |
| Kpn2I | TCCGGA | 1 cut(s) | 1514 |
| KpnI | GGTACC | 2 cut(s) | 329, 963 |
| LguI | GCTCTTC | 1 cut(s) | 1920 |
| LmnI | GCTCC | 3 cut(s) | 23, 126, 1450 |
| Lsp1109I | GCAGC | 5 cut(s) | 105, 1102, 1662, 2317, 2837 |
| LweI | GCATC | 9 cut(s) | 160, 1462, 1467, 1497, 1711, 1875, 2019, 2035, 2077 |
| MaeI | CTAG | 6 cut(s) | 198, 504, 1415, 1680, 1943, 2235 |
| MaeII | ACGT | 6 cut(s) | 806, 931, 1141, 1594, 1781, 2841 |
| MfeI | CAATTG | 3 cut(s) | 594, 1686, 3073 |
| MflI | RGATCY | 5 cut(s) | 772, 871, 1054, 1324, 1351 |
| MhlI | GDGCHC | 2 cut(s) | 1647, 2204 |
| MlyI | GAGTC | 4 cut(s) | 210, 509, 666, 1098 |
| MmeI | TCCRAC | 6 cut(s) | 237, 1372, 2179, 2202, 2545, 2808 |
| Mph1103I | ATGCAT | 2 cut(s) | 1482, 2012 |
| MroI | TCCGGA | 1 cut(s) | 1514 |
| MroXI | GAANNNNTTC | 3 cut(s) | 2490, 2580, 2799 |
| MslI | CAYNNNNRTG | 2 cut(s) | 246, 2073 |
| MspA1I | CMGCKG | 1 cut(s) | 113 |
| MspCI | CTTAAG | 1 cut(s) | 877 |
| MspI | CCGG | 4 cut(s) | 77, 1515, 2421, 3088 |
| MspR9I | CCNGG | 5 cut(s) | 379, 1041, 1546, 2214, 2422 |
| MunI | CAATTG | 3 cut(s) | 594, 1686, 3073 |
| Mva1269I | GAATGC | 1 cut(s) | 2674 |
| MvaI | CCWGG | 4 cut(s) | 379, 1041, 1546, 2214 |
| MvnI | CGCG | 1 cut(s) | 1998 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 220, 1708, 2671, 2737, 3207 |
| NciI | CCSGG | 1 cut(s) | 2422 |
| NdeI | CATATG | 1 cut(s) | 1190 |
| NlaIV | GGNNCC | 3 cut(s) | 327, 375, 961 |
| NmuCI | GTSAC | 6 cut(s) | 565, 745, 922, 2038, 2108, 2353 |
| NsiI | ATGCAT | 2 cut(s) | 1482, 2012 |
| NspI | RCATGY | 4 cut(s) | 784, 951, 2039, 2740 |
| NspV | TTCGAA | 1 cut(s) | 3014 |
| PaeI | GCATGC | 1 cut(s) | 951 |
| PagI | TCATGA | 1 cut(s) | 352 |
| PciSI | GCTCTTC | 1 cut(s) | 1920 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 645, 2392 |
| PctI | GAATGC | 1 cut(s) | 2674 |
| PdmI | GAANNNNTTC | 3 cut(s) | 2490, 2580, 2799 |
| PfeI | GAWTC | 7 cut(s) | 305, 1036, 2185, 2486, 2576, 2795, 2951 |
| Pfl23II | CGTACG | 1 cut(s) | 1581 |
| PflFI | GACNNNGTC | 2 cut(s) | 656, 2474 |
| PkrI | GCNGC | 5 cut(s) | 120, 1117, 1677, 2307, 2852 |
| PleI | GAGTC | 4 cut(s) | 209, 508, 665, 1098 |
| PmaCI | CACGTG | 1 cut(s) | 932 |
| PmlI | CACGTG | 1 cut(s) | 932 |
| PpsI | GAGTC | 4 cut(s) | 209, 508, 665, 1098 |
| Ppu21I | YACGTR | 1 cut(s) | 932 |
| PshAI | GACNNNNGTC | 1 cut(s) | 366 |
| PshBI | ATTAAT | 1 cut(s) | 1838 |
| Psp6I | CCWGG | 4 cut(s) | 377, 1039, 1544, 2212 |
| PspCI | CACGTG | 1 cut(s) | 932 |
| PspEI | GGTNACC | 1 cut(s) | 2416 |
| PspFI | CCCAGC | 1 cut(s) | 113 |
| PspGI | CCWGG | 4 cut(s) | 377, 1039, 1544, 2212 |
| PspLI | CGTACG | 1 cut(s) | 1581 |
| PspN4I | GGNNCC | 3 cut(s) | 327, 375, 961 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 366, 398 |
| PsuI | RGATCY | 5 cut(s) | 772, 871, 1054, 1324, 1351 |
| PsyI | GACNNNGTC | 2 cut(s) | 656, 2474 |
| RsaI | GTAC | 9 cut(s) | 327, 961, 1403, 1583, 1593, 1661, 1762, 2598, 2840 |
| RsaNI | GTAC | 9 cut(s) | 326, 960, 1402, 1582, 1592, 1660, 1761, 2597, 2839 |
| RseI | CAYNNNNRTG | 2 cut(s) | 246, 2073 |
| SapI | GCTCTTC | 1 cut(s) | 1920 |
| SatI | GCNGC | 5 cut(s) | 119, 1116, 1676, 2306, 2851 |
| ScaI | AGTACT | 2 cut(s) | 1403, 2598 |
| SchI | GAGTC | 4 cut(s) | 210, 509, 666, 1098 |
| ScrFI | CCNGG | 5 cut(s) | 379, 1041, 1546, 2214, 2422 |
| SduI | GDGCHC | 2 cut(s) | 1647, 2204 |
| SfaNI | GCATC | 9 cut(s) | 160, 1462, 1467, 1497, 1711, 1875, 2019, 2035, 2077 |
| SfcI | CTRYAG | 2 cut(s) | 1050, 2592 |
| SfuI | TTCGAA | 1 cut(s) | 3014 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 246, 2073 |
| SmlI | CTYRAG | 7 cut(s) | 877, 1299, 2180, 2300, 2327, 2759, 2914 |
| SmoI | CTYRAG | 7 cut(s) | 877, 1299, 2180, 2300, 2327, 2759, 2914 |
| SphI | GCATGC | 1 cut(s) | 951 |
| SsiI | CCGC | 6 cut(s) | 111, 557, 743, 1577, 1998, 2729 |
| SspI | AATATT | 6 cut(s) | 1156, 1176, 1666, 2029, 2532, 2625 |
| SspMI | CTAG | 6 cut(s) | 198, 504, 1415, 1680, 1943, 2235 |
| StyD4I | CCNGG | 5 cut(s) | 377, 1039, 1544, 2212, 2420 |
| StyI | CCWWGG | 2 cut(s) | 1445, 1892 |
| TaaI | ACNGT | 7 cut(s) | 853, 1286, 1381, 1788, 2596, 2873, 3008 |
| TaiI | ACGT | 6 cut(s) | 809, 934, 1144, 1597, 1784, 2844 |
| TaqI | TCGA | 7 cut(s) | 792, 1370, 1971, 2188, 2613, 3014, 3138 |
| TatI | WGTACW | 3 cut(s) | 1401, 1760, 2596 |
| TfiI | GAWTC | 7 cut(s) | 305, 1036, 2185, 2486, 2576, 2795, 2951 |
| TscAI | CASTG | 5 cut(s) | 1368, 1637, 1960, 2472, 2885 |
| TseFI | GTSAC | 6 cut(s) | 565, 745, 922, 2038, 2108, 2353 |
| TseI | GCWGC | 5 cut(s) | 118, 1115, 1675, 2305, 2850 |
| Tsp45I | GTSAC | 6 cut(s) | 565, 745, 922, 2038, 2108, 2353 |
| TspGWI | ACGGA | 2 cut(s) | 596, 1047 |
| TspRI | CASTG | 5 cut(s) | 1368, 1637, 1960, 2472, 2885 |
| Tth111I | GACNNNGTC | 2 cut(s) | 656, 2474 |
| Vha464I | CTTAAG | 1 cut(s) | 877 |
| VspI | ATTAAT | 1 cut(s) | 1838 |
| XapI | RAATTY | 8 cut(s) | 704, 821, 856, 1803, 2545, 2638, 2909, 3066 |
| XbaI | TCTAGA | 1 cut(s) | 197 |
| XceI | RCATGY | 4 cut(s) | 784, 951, 2039, 2740 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 487, 2760 |
| XmiI | GTMKAC | 3 cut(s) | 642, 973, 2887 |
| XmnI | GAANNNNTTC | 3 cut(s) | 2490, 2580, 2799 |
| XspI | CTAG | 6 cut(s) | 198, 504, 1415, 1680, 1943, 2235 |
| ZrmI | AGTACT | 2 cut(s) | 1403, 2598 |
| Zsp2I | ATGCAT | 2 cut(s) | 1482, 2012 |