RchiOBHm_Chr1g0346131

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
38278768 .. 38281545
2778 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57242

Sequence Viewer

Length: 2778 bp
ATGGAACCCGAATCTGGAAGTAGCACGAGTAAGGTACAAGACCTCAACTCCAGTCTCCTATCTCATGCTTTTGACTCAACATTAATTTACCTCAGGGTAGAGGAAGTTCTTAATAGACTAGATTCCATTATGGAGAAGAGAAAATATGTCTTGGGTTTGGAAGCAAGTGCTGGATACAGGGTATCGCAAACACTACAGTCAACTTCTTTGGTAGAAGACTCTGGTGTGTGTGGTAGGAATGACGAGAAGGAGACGCTTATTAAACTGTTGCTATCAGATGATGAGAAAAGCAATAATATAAGTGTGATTCCTATTGTGGGTATGGGTGGGATCGGAAAGACCACCCTTGCCCGGCTTTTGTACAACGATGTTAGAGTTGAACAACATTTTGACATCCAAGCATGGGCTTGTGTTTCTGAAAAATTTGATGTTCTTCGGATCTCACAACAAATTTATGAGTCCCTTACTTTAGATGCTTGCAACATTGGGAACTTACATCTACTTCAGTCAAAATTGAAGGCAGCTTTGAAGGGGAAAATGATTTTCATTGTTCTTGATGACGTGTGGAATAAGAATTATACTGAATGGGAGGTCTTAAGGCGTCCTTTTCAATTTGGAGCACATGGAAGTAAGATTATTGTCACAACACGCAATCAAGATGTTGCACGTATGGTGGGTACTCTTGAAGCTCACTATCTAATGCCAATGCCCGAGGAAGATGGTTGGCCATTATTTGAAAAACATGCCTTCAAAAATGCAGGTGTTGGTGTGCGCGCACATCTTGGAGAAATCGGTAGACAAATTGTTCGAAAGTGCAAGGGTCTTCCTTTGGCTATTAAGTCCCTTGCGGGTCTCTTACGTTCTAAATTAAATGTTGGTGAATGGGAAACTATATTGAACAGTGACCTGTGGGAGTTGCCTTTGGAGTGTGACATTCTGCCATCTCTTTGGTTGAGCTATATGTACCTGCCTTCACAACTCAAACATTGTTTTGCATATTGTTCGATATTTCCCAAGAACTATGTGTTCGAAACATCAGAATTGGTTTACTTGTGGAAGGCTGAAGATCTAGTGCAACCTAAAAAAACCAAAACTGCAGAAGAAATCGGACAAGATTACTTCAATGATCTAATCTCAATGTCATTTATTCAAGTTGCATCAAGTTCCGATAAATATATCATGCATGACCTTATTAATGATTTAGCAAGCTTTGTATCAGGAGAATTTTTTTCTAGGTGGGAGGGCAGTGATTCACCCAACAATTTGAGCAAGACTCGTCACTTTTCATTTATGTCGAGATATTGTGATGAGACTGATAGCCTAGAGATGTTTGAGGCTTTACAGCAAGCTAAACATTTGCACACCTTACTACAATTAGGACCATATATGCGGTGGACGTTCTCGGGCAAAGGGTTCTATGAGGCATTGCCAAAGTTTCAATGTTTAAGAATGCTCAAGTTATCAGGGTACTATATTGATGAATTGCCTGATTCAATTAACAACTTGAAACATCTTCAGCACTTGGACTTGTCTTACAGTTCCATCGAAAAGTTACCTGATACAATTTGTACTTTGTATAACTTGCAAGTATTGTTGTTGGTATGCTGTACAGGCCTTACTGAACTGCCAGCTAACTTGGGAAGATTGATCAACTTGAGCCATCTGGATATTACAAAGACGTTAAAAAAGATGCCACCACAAATGGGTAAGTTGAAAGACCTCCAGATGTTACCAGAGTTTGCGCTAGACAAACACACTGCTGGGGATAATTTGCCGGAGTTAAAGAAGCTTGAAAAATTGCGTGGAAGACTTTGTATCTCAGGGCTTGAGTATAGCAGCGGTTTGGAGGCCTACATACTGAGGGACAAGAAGTTTCTTAAGGAACTGGTATTGGAATGGAAAGACCCGATTTTTTTTTGGGGAGGAAGGGATTCATGTGAAGAAGGCAATAATACTGTAGAAGAAAGAGAAGTGCTTGAGAAGCTCCAACCTCACCTGAACCTGGAAAGTCTTAAAATTAGAGGTTATAGAGGCAAAATGTTTCCAGGTTGGTCAGAATATTATTCTTCCTCTGCTCTCGTTTATCTTGAACTTTTTGATTGTGATAATTGTATATCCTTGCCACCATTGGGACAGTTACCTTCCCTCAGAGAGCTTGTAGTAAAATTCTGTCCCAATCTTACCGGGAGATTAGCATCAGACAGTCTCCCATCTCTTGAGTCTTTGGACGTATATAATTGCCCAGAATTTGAATGCTTTCCCGAAGATGGATTCCCGTCAAAGTTAAAATCACTTGAGTACTTCGACTGTAAAAAAGTGAATGCAAAGAGAGTGCAGAATCTGAACAAGGGTCTCCGAACACTCGCCTCTCTTAAAAGACTGGTACTTGATTTTGACTGCGACGAAAAAGTAGATTGGTTTGCGGAGGAGCTGTTTCCCAGCACTCTCACATATCTAGAGATCTGCCGTCTGAATTGTGAGACCATCGACGGCGCCAAGTGGTTTGGCCATCTCAACTCTCTTCAGACATTGATTATTCGCGAGTGCCCTGCGCTCCGGTGCTTGCCAGAAAGTGGGCTACCCTCTTCTCTTCAACGCTTGGAGATTTGGAATTGTCCTGCGCTCCGGTGCTTGCCAGATAGTGGGCTACCCTCTTCGCTACATATCTATGAATGTCCTTTGCTTGAGAAACGGTGCCGAAGAGAGACGGATGAAGATTGGCCCAAGATTCACATCAAGGCATATTTATTGGGTAACGACAGAGGGCTTGCATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

925

Amino Acids

105.6

Weight (kDa)

5.7

Isoelectric Point (pI)

52.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 81 - 252 9.8e-35 NB-ARC domain
WHD_DRP PF23559 336 - 402 2.5e-23 Disease resistance protein Winged helix domain
LRR_14 PF23598 475 - 536 5.4e-12 Leucine-rich repeat region
LRR_14 PF23598 475 - 806 1.6e-28 Leucine-rich repeat region
LRR_R13L1-DRL21 PF25019 592 - 722 2.9e-30 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000035)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G14470 AT3G14470
fragaria_vesca FvH4_1g01220 FvH4_1g01230 FvH4_3g24551 FvH4_3g24552 FvH4_4g29310 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_6g39860 FvH4_6g39861 FvH4_7g11380
malus_domestica MD00G1072900.v1.1 MD00G1073100.v1.1 MD00G1120600.v1.1 MD00G1120900.v1.1 MD00G1121000.v1.1 MD00G1121200.v1.1 MD00G1152300.v1.1 MD00G1203600.v1.1 MD00G1203700.v1.1 MD02G1250900.v1.1 MD02G1251900.v1.1 MD02G1252800.v1.1 MD02G1277100.v1.1 MD02G1277200.v1.1 MD02G1277400.v1.1 MD02G1286100.v1.1 MD02G1286200.v1.1 MD02G1286900.v1.1 MD03G1006200.v1.1 MD03G1015300.v1.1 MD03G1015500.v1.1 MD03G1015900.v1.1 MD03G1016000.v1.1 MD03G1024900.v1.1 MD03G1025000.v1.1 MD03G1025500.v1.1 MD03G1026000.v1.1 MD03G1026500.v1.1 MD03G1031800.v1.1 MD03G1072200.v1.1 MD07G1028000.v1.1 MD07G1028300.v1.1 MD07G1029400.v1.1 MD07G1029500.v1.1 MD07G1040300.v1.1 MD07G1044500.v1.1 MD07G1045100.v1.1 MD07G1045500.v1.1 MD07G1050700.v1.1 MD07G1050900.v1.1 MD07G1055800.v1.1 MD07G1056200.v1.1 MD07G1056600.v1.1 MD07G1057100.v1.1 MD07G1057200.v1.1 MD08G1056500.v1.1 MD08G1056600.v1.1 MD08G1056700.v1.1 MD08G1056800.v1.1 MD08G1128800.v1.1 MD08G1129500.v1.1 MD08G1130000.v1.1 MD11G1066700.v1.1 MD11G1066800.v1.1 MD11G1066900.v1.1 MD11G1067000.v1.1 MD11G1067500.v1.1 MD11G1069800.v1.1 MD11G1070400.v1.1 MD11G1071100.v1.1 MD11G1071200.v1.1 MD11G1077200.v1.1 MD11G1077700.v1.1 MD11G1077900.v1.1 MD11G1078100.v1.1 MD11G1078300.v1.1 MD11G1078500.v1.1 MD11G1135200.v1.1 MD11G1135400.v1.1 MD11G1152900.v1.1 MD11G1153000.v1.1 MD17G1056800.v1.1
prunus_persica Prupe.2G037800_v2.0.a1 Prupe.2G037800_v2.0.a1 Prupe.2G037800_v2.0.a1 Prupe.2G037800_v2.0.a1 Prupe.2G040500_v2.0.a1 Prupe.2G040700_v2.0.a1 Prupe.2G043000_v2.0.a1 Prupe.2G043100_v2.0.a1 Prupe.2G043200_v2.0.a1 Prupe.2G046000_v2.0.a1 Prupe.2G046300_v2.0.a1 Prupe.2G046400_v2.0.a1 Prupe.2G046400_v2.0.a1 Prupe.2G046700_v2.0.a1 Prupe.2G046900_v2.0.a1 Prupe.2G051100_v2.0.a1 Prupe.2G052200_v2.0.a1 Prupe.2G053600_v2.0.a1 Prupe.2G053600_v2.0.a1 Prupe.2G053600_v2.0.a1 Prupe.2G053600_v2.0.a1 Prupe.2G053700_v2.0.a1 Prupe.2G053800_v2.0.a1 Prupe.2G053900_v2.0.a1 Prupe.2G054000_v2.0.a1 Prupe.2G054100_v2.0.a1 Prupe.2G054200_v2.0.a1 Prupe.2G054300_v2.0.a1 Prupe.2G054300_v2.0.a1 Prupe.2G054300_v2.0.a1 Prupe.2G054300_v2.0.a1 Prupe.2G054500_v2.0.a1 Prupe.2G054700_v2.0.a1 Prupe.4G286000_v2.0.a1 Prupe.4G286000_v2.0.a1 Prupe.4G286000_v2.0.a1 Prupe.6G129800_v2.0.a1 Prupe.6G130000_v2.0.a1 Prupe.6G130000_v2.0.a1
pyrus_communis pycom02g23740 pycom02g23750 pycom02g24320 pycom03g00620 pycom03g01280 pycom03g01320 pycom03g01350 pycom03g01360 pycom03g01370 pycom03g01380 pycom03g01390 pycom03g02160 pycom03g02170 pycom03g05850 pycom03g09810 pycom07g02120 pycom07g02790 pycom07g02800 pycom07g03210 pycom07g03660 pycom07g03670 pycom07g04350 pycom08g10780 pycom08g10840 pycom08g10910 pycom11g05650 pycom11g05670 pycom11g05800 pycom11g05880 pycom11g05890 pycom11g05940 pycom11g06490 pycom11g06500 pycom11g06520 pycom11g06560 pycom11g06570 pycom11g11230 pycom11g13650 pycom17g05700
rosa_chinensis RchiOBHm_Chr1g0318341 RchiOBHm_Chr1g0318901 RchiOBHm_Chr1g0318931 RchiOBHm_Chr1g0327301 RchiOBHm_Chr1g0328491 RchiOBHm_Chr1g0336761 RchiOBHm_Chr1g0336831 RchiOBHm_Chr1g0340721 RchiOBHm_Chr1g0342461 RchiOBHm_Chr1g0342471 RchiOBHm_Chr1g0342481 RchiOBHm_Chr1g0346131 RchiOBHm_Chr1g0346191 RchiOBHm_Chr1g0346211 RchiOBHm_Chr1g0346241 RchiOBHm_Chr1g0346261 RchiOBHm_Chr1g0346281 RchiOBHm_Chr1g0346461 RchiOBHm_Chr1g0346471 RchiOBHm_Chr1g0346481 RchiOBHm_Chr1g0346501 RchiOBHm_Chr1g0347691 RchiOBHm_Chr1g0347701 RchiOBHm_Chr1g0347751 RchiOBHm_Chr1g0347791 RchiOBHm_Chr1g0347971 RchiOBHm_Chr1g0349661 RchiOBHm_Chr1g0349741 RchiOBHm_Chr1g0357561 RchiOBHm_Chr3g0492601 RchiOBHm_Chr5g0039181 RchiOBHm_Chr5g0039231 RchiOBHm_Chr5g0039241 RchiOBHm_Chr5g0039251 RchiOBHm_Chr5g0039531 RchiOBHm_Chr5g0044001 RchiOBHm_Chr5g0044571 RchiOBHm_Chr5g0044611 RchiOBHm_Chr5g0044631 RchiOBHm_Chr5g0044641 RchiOBHm_Chr5g0044651 RchiOBHm_Chr5g0044661 RchiOBHm_Chr5g0044681 RchiOBHm_Chr5g0045221 RchiOBHm_Chr5g0045901 RchiOBHm_Chr5g0045991 RchiOBHm_Chr5g0046001 RchiOBHm_Chr5g0046011
rosa_laevigata RLG00000028715 RLG00000028718 RLG00000029034 RLG00000029926 RLG00000030516 RLG00000034285 RLG00000034288
rosa_multiflora Rmu_co7987576.1_g000001 Rmu_co8028038.1_g000001 Rmu_co8104858.1_g000001 Rmu_co8185828.1_g000001 Rmu_co8227651.1_g000001 Rmu_co8235061.1_g000001 Rmu_co8246845.1_g000001 Rmu_co8254315.1_g000001 Rmu_co8284899.1_g000001 Rmu_co8401461.1_g000001 Rmu_co8475625.1_g000001 Rmu_co8502681.1_g000001 Rmu_sc0000250.1_g000005 Rmu_sc0000492.1_g000001 Rmu_sc0000533.1_g000004 Rmu_sc0000795.1_g000114 Rmu_sc0000831.1_g000039 Rmu_sc0000907.1_g000014 Rmu_sc0000907.1_g000034 Rmu_sc0001035.1_g000007 Rmu_sc0001035.1_g000011 Rmu_sc0001035.1_g000012 Rmu_sc0001099.1_g000003 Rmu_sc0001157.1_g000008 Rmu_sc0001212.1_g000016 Rmu_sc0001212.1_g000017 Rmu_sc0001304.1_g000027 Rmu_sc0001304.1_g000033 Rmu_sc0001773.1_g000019 Rmu_sc0001836.1_g000069 Rmu_sc0001856.1_g000004 Rmu_sc0002286.1_g000003 Rmu_sc0002286.1_g000004 Rmu_sc0002286.1_g000005 Rmu_sc0002286.1_g000007 Rmu_sc0002286.1_g000015 Rmu_sc0002495.1_g000025 Rmu_sc0002545.1_g000008 Rmu_sc0002545.1_g000009 Rmu_sc0002662.1_g000009 Rmu_sc0003363.1_g000019 Rmu_sc0003363.1_g000022 Rmu_sc0003600.1_g000057 Rmu_sc0003809.1_g000036 Rmu_sc0003809.1_g000037 Rmu_sc0005008.1_g000026 Rmu_sc0005008.1_g000028 Rmu_sc0005028.1_g000001 Rmu_sc0005144.1_g000022 Rmu_sc0005167.1_g000004 Rmu_sc0005626.1_g000005 Rmu_sc0005626.1_g000018 Rmu_sc0006228.1_g000011 Rmu_sc0006609.1_g000007 Rmu_sc0006609.1_g000009 Rmu_sc0006609.1_g000015 Rmu_sc0006609.1_g000016 Rmu_sc0006609.1_g000017 Rmu_sc0006609.1_g000018 Rmu_sc0007060.1_g000003 Rmu_sc0007318.1_g000011 Rmu_sc0007992.1_g000002 Rmu_sc0009172.1_g000001 Rmu_sc0010151.1_g000010 Rmu_sc0010151.1_g000011 Rmu_sc0011778.1_g000001 Rmu_sc0011778.1_g000005 Rmu_sc0011778.1_g000009 Rmu_sc0012293.1_g000001 Rmu_sc0012293.1_g000002 Rmu_sc0016606.1_g000001 Rmu_sc0016836.1_g000001 Rmu_sc0021084.1_g000008 Rmu_sc0021449.1_g000001 Rmu_sc0026523.1_g000001 Rmu_sc0027133.1_g000003 Rmu_sc0038674.1_g000001 Rmu_ssc0000255.1_g000053 Rmu_ssc0000255.1_g000063 Rmu_ssc0000255.1_g000064 Rmu_ssc0000263.1_g000004 Rmu_ssc0000400.1_g000027
rosa_roxburghii Rroxscaffold_1G00035290 Rroxscaffold_1G00036350 Rroxscaffold_1G00036360 Rroxscaffold_1G00036400 Rroxscaffold_1G00036460 Rroxscaffold_1G00037000 Rroxscaffold_1G00040440 Rroxscaffold_1G00041890 Rroxscaffold_1G00041920 Rroxscaffold_4G00307460 Rroxscaffold_4G00307500 Rroxscaffold_4G00308500 Rroxscaffold_4G00308510 Rroxscaffold_4G00308770 Rroxscaffold_4G00313020 Rroxscaffold_4G00321580 Rroxscaffold_4G00323030 Rroxscaffold_4G00326850 Rroxscaffold_4G00328770 Rroxscaffold_4G00328780 Rroxscaffold_4G00329310 Rroxscaffold_5G00352110
rosa_rugosa Rorug01G0020700 Rorug01G0023000 Rorug01G0023100 Rorug01G0023200 Rorug01G0023300 Rorug01G0023400 Rorug01G0024500 Rorug01G0025100 Rorug01G0025200 Rorug01G0025400 Rorug01G0025400 Rorug01G0064700 Rorug01G0065300 Rorug01G0127600 Rorug01G0128000 Rorug01G0148000.1 Rorug01G0150500.1 Rorug01G0161600.1 Rorug01G0161800.1 Rorug01G0163600.1 Rorug01G0178300 Rorug01G0178500 Rorug01G0178700 Rorug01G0179900 Rorug01G0180200 Rorug01G0180300 Rorug01G0180400 Rorug01G0189000 Rorug01G0189100 Rorug01G0190500 Rorug01G0204800 Rorug05G0177200 Rorug05G0210300 Rorug05G0210300 Rorug05G0210300 Rorug05G0215400 Rorug05G0215400 Rorug05G0215400 Rorug05G0215400 Rorug05G0215500 Rorug05G0215600 Rorug05G0215800 Rorug05G0215900 Rorug05G0215900 Rorug05G0216000 Rorug05G0216200 Rorug05G0216300 Rorug05G0221900 Rorug07G0276700
rosa_samantha Rh1BG028400 Rh1BG033500 Rh1BG065100 Rh1BG073100 Rh1BG073200 Rh1BG117000 Rh1BG164000 Rh1BG164200 Rh1BG172100 Rh1BG173900 Rh1BG174100 Rh1BG188400 Rh1CG036000 Rh1CG036500 Rh1CG089900 Rh1CG140200 Rh1CG164700 Rh1CG182600 Rh1CG182900 Rh1CG183400 Rh1CG191300 Rh1CG192000 Rh1CG207700 Rh1DG033800 Rh1DG033900 Rh1DG096000 Rh5AG299900 Rh5AG304500 Rh5AG307100 Rh5AG307500 Rh5CG301600 Rh5CG329800 Rh5CG333800 Rh5DG311400 Rh5DG316300 Rh5DG316400 Rh5DG316700 Rh5DG316800 Rh5DG316900 Rh5DG326100 Rh7AG431900 Rh7CG451000
rosa_wichuraiana Rw0G007840 Rw0G009850 Rw0G013000 Rw0G015090 Rw0G021190 Rw1G002610 Rw1G004320 Rw1G006520 Rw1G007250 Rw1G012020 Rw1G013830 Rw1G014770 Rw1G016300 Rw1G016600 Rw1G016650 Rw1G017290 Rw1G017420 Rw1G017630 Rw1G017650 Rw1G017660 Rw1G017690 Rw1G017700 Rw1G018960 Rw5G024660 Rw5G024700 Rw5G024720 Rw5G024740 Rw5G024980 Rw5G027710 Rw5G027720 Rw5G027730 Rw5G027740 Rw5G027750 Rw5G028130 Rw5G028740 Rw5G028750 Rw5G028790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 749
Acc36I ACCTGC 2 cut(s) 749, 975
AccB1I GGYRCC 2 cut(s) 2492, 2694
AccB7I CCANNNNNTGG 2 cut(s) 2573, 2642
AccI GTMKAC 1 cut(s) 796
AccII CGCG 2 cut(s) 774, 2541
AciI CCGC 4 cut(s) 848, 1390, 1839, 2423
AclWI GGATC 2 cut(s) 338, 446
AcoI YGGCCR 2 cut(s) 725, 2506
AcsI RAATTY 5 cut(s) 422, 450, 1223, 2165, 2246
AcuI CTGAAG 4 cut(s) 488, 1083, 1499, 2507
AcyI GRCGYC 2 cut(s) 601, 2493
AfaI GTAC 9 cut(s) 36, 362, 679, 965, 1469, 1570, 1609, 2300, 2385
AflII CTTAAG 2 cut(s) 595, 1877
AflIII ACRYGT 1 cut(s) 561
AjiI CACGTC 1 cut(s) 562
AjnI CCWGG 2 cut(s) 2001, 2044
Alw21I GWGCWC 1 cut(s) 622
Alw26I GTCTC 8 cut(s) 59, 245, 857, 1304, 2210, 2357, 2474, 2699
AlwI GGATC 2 cut(s) 338, 446
AlwNI CAGNNNCTG 1 cut(s) 2341
Ama87I CYCGRG 2 cut(s) 710, 1402
AoxI GGCC 5 cut(s) 725, 1612, 1848, 2506, 2720
ApeKI GCWGC 2 cut(s) 521, 1836
ApoI RAATTY 5 cut(s) 422, 450, 1223, 2165, 2246
ArsI GACNNNNNNTTYG 2 cut(s) 789, 821
AseI ATTAAT 2 cut(s) 83, 1194
Asp700I GAANNNNTTC 2 cut(s) 1930, 2256
AspLEI GCGC 6 cut(s) 774, 776, 1744, 2495, 2554, 2623
AspS9I GGNCC 2 cut(s) 1379, 2721
AsuC2I CCSGG 2 cut(s) 352, 2185
AsuHPI GGTGA 3 cut(s) 890, 1245, 1985
AsuII TTCGAA 2 cut(s) 808, 1029
AvaI CYCGRG 2 cut(s) 710, 1402
AvaII GGWCC 1 cut(s) 1379
AxyI CCTNAGG 1 cut(s) 92
BaeGI GKGCMC 1 cut(s) 2549
BalI TGGCCA 2 cut(s) 727, 2508
BanI GGYRCC 2 cut(s) 2492, 2694
BauI CACGAG 1 cut(s) 25
BbsI GAAGAC 3 cut(s) 222, 815, 1813
Bbv12I GWGCWC 1 cut(s) 622
BbvI GCAGC 2 cut(s) 533, 1848
BccI CCATC 8 cut(s) 713, 949, 1550, 1668, 2218, 2261, 2492, 2517
BceAI ACGGC 2 cut(s) 2451, 2506
BcgI CGANNNNNNTGC 4 cut(s) 984, 1018, 2531, 2565
BciT130I CCWGG 2 cut(s) 2003, 2046
BciVI GTATCC 1 cut(s) 167
BclI TGATCA 1 cut(s) 1647
BcnI CCSGG 2 cut(s) 352, 2185
BcoDI GTCTC 8 cut(s) 59, 245, 857, 1304, 2210, 2357, 2474, 2699
BfaI CTAG 6 cut(s) 119, 1070, 1233, 1322, 1745, 2456
BfmI CTRYAG 3 cut(s) 194, 1095, 1956
BfoI RGCGCY 1 cut(s) 2496
BfrI CTTAAG 2 cut(s) 595, 1877
BfuAI ACCTGC 2 cut(s) 749, 975
BfuI GTATCC 1 cut(s) 167
BglII AGATCT 2 cut(s) 1066, 2460
BisI GCNGC 2 cut(s) 522, 1837
BlsI GCNGC 2 cut(s) 523, 1838
BmcAI AGTACT 1 cut(s) 2300
Bme1390I CCNGG 4 cut(s) 352, 2003, 2046, 2185
Bme18I GGWCC 1 cut(s) 1379
BmeT110I CYCGRG 2 cut(s) 710, 1402
BmgBI CACGTC 1 cut(s) 562
BmgT120I GGNCC 2 cut(s) 1379, 2721
BmiI GGNNCC 3 cut(s) 6, 2494, 2696
BmrFI CCNGG 4 cut(s) 352, 2003, 2046, 2185
BmsI GCATC 4 cut(s) 463, 1166, 1680, 2204
BpiI GAAGAC 3 cut(s) 222, 815, 1813
BplI GAGNNNNNCTC 2 cut(s) 1258, 1290
BpmI CTGGAG 2 cut(s) 34, 1706
Bpu14I TTCGAA 2 cut(s) 808, 1029
BpuEI CTTGAG 7 cut(s) 1439, 1675, 1847, 1997, 2237, 2315, 2705
BpuMI CCSGG 2 cut(s) 352, 2185
BsaAI YACGTR 1 cut(s) 668
BsaBI GATNNNNATC 2 cut(s) 2194, 2732
BsaHI GRCGYC 2 cut(s) 601, 2493
BsaI GGTCTC 3 cut(s) 857, 2357, 2474
BsaJI CCNNGG 1 cut(s) 711
BsaWI WCCGGW 2 cut(s) 2556, 2625
BsaXI ACNNNNNCTCC 4 cut(s) 32, 62, 2417, 2447
Bse1I ACTGG 3 cut(s) 51, 1890, 2385
Bse21I CCTNAGG 1 cut(s) 92
Bse3DI GCAATG 1 cut(s) 1424
Bse8I GATNNNNATC 2 cut(s) 2194, 2732
BseBI CCWGG 2 cut(s) 2003, 2046
BseDI CCNNGG 1 cut(s) 711
BseGI GGATG 2 cut(s) 393, 2716
BseJI GATNNNNATC 2 cut(s) 2194, 2732
BseMI GCAATG 1 cut(s) 1424
BseMII CTCAG 4 cut(s) 106, 1833, 1850, 2161
BseNI ACTGG 3 cut(s) 51, 1890, 2385
BsePI GCGCGC 1 cut(s) 772
BseRI GAGGAG 1 cut(s) 2441
BseSI GKGCMC 1 cut(s) 2549
BseXI GCAGC 2 cut(s) 533, 1848
BseYI CCCAGC 2 cut(s) 1760, 2438
BsgI GTGCAG 1 cut(s) 2354
Bsh1236I CGCG 2 cut(s) 774, 2541
BshFI GGCC 5 cut(s) 727, 1614, 1850, 2508, 2722
BshNI GGYRCC 2 cut(s) 2492, 2694
BsiHKAI GWGCWC 1 cut(s) 622
BsiHKCI CYCGRG 2 cut(s) 710, 1402
BsiSI CCGG 5 cut(s) 352, 1775, 2184, 2557, 2626
BslFI GGGAC 5 cut(s) 445, 826, 1877, 2145, 2157
BsmAI GTCTC 8 cut(s) 59, 245, 857, 1304, 2210, 2357, 2474, 2699
BsmBI CGTCTC 2 cut(s) 245, 2699
BsmFI GGGAC 5 cut(s) 445, 826, 1877, 2145, 2157
BsmI GAATGC 4 cut(s) 1455, 2258, 2326, 2771
BsnI GGCC 5 cut(s) 727, 1614, 1850, 2508, 2722
Bso31I GGTCTC 3 cut(s) 857, 2357, 2474
BsoBI CYCGRG 2 cut(s) 710, 1402
Bsp119I TTCGAA 2 cut(s) 808, 1029
Bsp1286I GDGCHC 2 cut(s) 622, 2549
Bsp1407I TGTACA 2 cut(s) 360, 1607
Bsp143I GATC 6 cut(s) 330, 438, 1066, 1126, 1647, 2460
Bsp68I TCGCGA 1 cut(s) 2541
BspACI CCGC 4 cut(s) 848, 1390, 1839, 2423
BspANI GGCC 5 cut(s) 727, 1614, 1850, 2508, 2722
BspCNI CTCAG 4 cut(s) 105, 1832, 1851, 2160
BspFNI CGCG 2 cut(s) 774, 2541
BspLI GGNNCC 3 cut(s) 6, 2494, 2696
BspMAI CTGCAG 1 cut(s) 1099
BspMI ACCTGC 2 cut(s) 749, 975
BspPI GGATC 2 cut(s) 338, 446
BspT104I TTCGAA 2 cut(s) 808, 1029
BspT107I GGYRCC 2 cut(s) 2492, 2694
BspTI CTTAAG 2 cut(s) 595, 1877
BspTNI GGTCTC 3 cut(s) 857, 2357, 2474
BsrDI GCAATG 1 cut(s) 1424
BsrGI TGTACA 2 cut(s) 360, 1607
BsrI ACTGG 3 cut(s) 51, 1890, 2385
BssECI CCNNGG 1 cut(s) 711
BssHII GCGCGC 1 cut(s) 772
BssMI GATC 6 cut(s) 330, 438, 1066, 1126, 1647, 2460
BssNI GRCGYC 2 cut(s) 601, 2493
BssSI CACGAG 1 cut(s) 25
Bst2BI CACGAG 1 cut(s) 25
Bst2UI CCWGG 2 cut(s) 2003, 2046
Bst4CI ACNGT 9 cut(s) 198, 267, 902, 1538, 1957, 2136, 2204, 2309, 2694
Bst6I CTCTTC 6 cut(s) 131, 2526, 2590, 2595, 2659, 2695
BstACI GRCGYC 2 cut(s) 601, 2493
BstAFI CTTAAG 2 cut(s) 595, 1877
BstAUI TGTACA 2 cut(s) 360, 1607
BstBAI YACGTR 1 cut(s) 668
BstBI TTCGAA 2 cut(s) 808, 1029
BstC8I GCNNGC 8 cut(s) 478, 774, 1207, 1347, 1629, 2564, 2633, 2769
BstDEI CTNAG 4 cut(s) 92, 1819, 1859, 2147
BstF5I GGATG 2 cut(s) 393, 2716
BstFNI CGCG 2 cut(s) 774, 2541
BstH2I RGCGCY 1 cut(s) 2496
BstHHI GCGC 6 cut(s) 774, 776, 1744, 2495, 2554, 2623
BstKTI GATC 6 cut(s) 333, 441, 1069, 1129, 1650, 2463
BstMAI GTCTC 8 cut(s) 59, 245, 857, 1304, 2210, 2357, 2474, 2699
BstMBI GATC 6 cut(s) 330, 438, 1066, 1126, 1647, 2460
BstMWI GCNNNNNNNGC 2 cut(s) 1611, 1981
BstNI CCWGG 2 cut(s) 2003, 2046
BstNSI RCATGY 1 cut(s) 746
BstSCI CCNGG 4 cut(s) 350, 2001, 2044, 2183
BstSFI CTRYAG 3 cut(s) 194, 1095, 1956
BstSLI GKGCMC 1 cut(s) 2549
BstUI CGCG 2 cut(s) 774, 2541
BstV1I GCAGC 2 cut(s) 533, 1848
BstV2I GAAGAC 3 cut(s) 222, 815, 1813
BstX2I RGATCY 3 cut(s) 438, 1066, 2460
BstXI CCANNNNNNTGG 1 cut(s) 948
BstYI RGATCY 3 cut(s) 438, 1066, 2460
Bsu36I CCTNAGG 1 cut(s) 92
BsuI GTATCC 1 cut(s) 167
BsuRI GGCC 5 cut(s) 727, 1614, 1850, 2508, 2722
BtrI CACGTC 1 cut(s) 562
BtsCI GGATG 2 cut(s) 393, 2716
BtsI GCAGTG 2 cut(s) 1252, 1755
BtsIMutI CAGTG 3 cut(s) 907, 1252, 1755
BtuMI TCGCGA 1 cut(s) 2541
BveI ACCTGC 2 cut(s) 749, 975
Cac8I GCNNGC 8 cut(s) 478, 774, 1207, 1347, 1629, 2564, 2633, 2769
CaiI CAGNNNCTG 1 cut(s) 2341
CfoI GCGC 6 cut(s) 774, 776, 1744, 2495, 2554, 2623
Cfr13I GGNCC 2 cut(s) 1379, 2721
CseI GACGC 2 cut(s) 262, 590
Csp6I GTAC 9 cut(s) 35, 361, 678, 964, 1468, 1569, 1608, 2299, 2384
CviAII CATG 7 cut(s) 65, 402, 623, 743, 1180, 1184, 1935
CviQI GTAC 9 cut(s) 35, 361, 678, 964, 1468, 1569, 1608, 2299, 2384
DdeI CTNAG 4 cut(s) 92, 1819, 1859, 2147
DinI GGCGCC 1 cut(s) 2494
DpnI GATC 6 cut(s) 332, 440, 1068, 1128, 1649, 2462
DpnII GATC 6 cut(s) 330, 438, 1066, 1126, 1647, 2460
EaeI YGGCCR 2 cut(s) 725, 2506
Eam1104I CTCTTC 6 cut(s) 131, 2526, 2590, 2595, 2659, 2695
EarI CTCTTC 6 cut(s) 131, 2526, 2590, 2595, 2659, 2695
Eco147I AGGCCT 2 cut(s) 1614, 1850
Eco31I GGTCTC 3 cut(s) 857, 2357, 2474
Eco47I GGWCC 1 cut(s) 1379
Eco57I CTGAAG 4 cut(s) 488, 1083, 1499, 2507
Eco81I CCTNAGG 1 cut(s) 92
Eco88I CYCGRG 2 cut(s) 710, 1402
EcoRII CCWGG 2 cut(s) 2001, 2044
EcoT22I ATGCAT 1 cut(s) 1185
EgeI GGCGCC 1 cut(s) 2494
EheI GGCGCC 1 cut(s) 2494
Esp3I CGTCTC 2 cut(s) 245, 2699
FaeI CATG 7 cut(s) 68, 405, 626, 746, 1183, 1187, 1938
FalI AAGNNNNNCTT 2 cut(s) 589, 621
FaqI GGGAC 5 cut(s) 445, 826, 1877, 2145, 2157
FatI CATG 7 cut(s) 64, 401, 622, 742, 1179, 1183, 1934
FauI CCCGC 1 cut(s) 841
FbaI TGATCA 1 cut(s) 1647
FblI GTMKAC 1 cut(s) 796
Fnu4HI GCNGC 2 cut(s) 522, 1837
FokI GGATG 2 cut(s) 380, 2723
Fsp4HI GCNGC 2 cut(s) 522, 1837
FspBI CTAG 6 cut(s) 119, 1070, 1233, 1322, 1745, 2456
GlaI GCGC 6 cut(s) 773, 775, 1743, 2494, 2553, 2622
GluI GCNGC 2 cut(s) 522, 1837
GsaI CCCAGC 2 cut(s) 1764, 2442
GsuI CTGGAG 2 cut(s) 34, 1706
HaeII RGCGCY 1 cut(s) 2496
HaeIII GGCC 5 cut(s) 727, 1614, 1850, 2508, 2722
HapII CCGG 5 cut(s) 352, 1775, 2184, 2557, 2626
HgaI GACGC 2 cut(s) 262, 590
HhaI GCGC 6 cut(s) 774, 776, 1744, 2495, 2554, 2623
Hin1I GRCGYC 2 cut(s) 601, 2493
Hin1II CATG 7 cut(s) 68, 405, 626, 746, 1183, 1187, 1938
Hin6I GCGC 6 cut(s) 772, 774, 1742, 2493, 2552, 2621
HinP1I GCGC 6 cut(s) 772, 774, 1742, 2493, 2552, 2621
HincII GTYRAC 1 cut(s) 201
HindII GTYRAC 1 cut(s) 201
HindIII AAGCTT 2 cut(s) 1207, 1787
HpaII CCGG 5 cut(s) 352, 1775, 2184, 2557, 2626
HphI GGTGA 3 cut(s) 890, 1245, 1985
Hpy166II GTNNAC 4 cut(s) 201, 797, 1048, 1395
Hpy8I GTNNAC 4 cut(s) 201, 797, 1048, 1395
Hpy99I CGWCG 2 cut(s) 2405, 2492
HpyAV CCTTC 9 cut(s) 241, 511, 523, 757, 981, 1051, 1920, 1937, 2151
HpyCH4III ACNGT 9 cut(s) 198, 267, 902, 1538, 1957, 2136, 2204, 2309, 2694
HpyCH4IV ACGT 6 cut(s) 561, 667, 859, 1397, 1679, 2229
HpyF10VI GCNNNNNNNGC 2 cut(s) 1611, 1981
HpyF3I CTNAG 4 cut(s) 92, 1819, 1859, 2147
HpySE526I ACGT 6 cut(s) 561, 667, 859, 1397, 1679, 2229
Hsp92I GRCGYC 2 cut(s) 601, 2493
Hsp92II CATG 7 cut(s) 68, 405, 626, 746, 1183, 1187, 1938
HspAI GCGC 6 cut(s) 772, 774, 1742, 2493, 2552, 2621
KasI GGCGCC 1 cut(s) 2492
Ksp22I TGATCA 1 cut(s) 1647
Kzo9I GATC 6 cut(s) 330, 438, 1066, 1126, 1647, 2460
LmnI GCTCC 5 cut(s) 617, 1989, 2428, 2559, 2628
Lsp1109I GCAGC 2 cut(s) 533, 1848
LweI GCATC 4 cut(s) 463, 1166, 1680, 2204
MaeI CTAG 6 cut(s) 119, 1070, 1233, 1322, 1745, 2456
MaeII ACGT 6 cut(s) 561, 667, 859, 1397, 1679, 2229
MaeIII GTNAC 8 cut(s) 640, 902, 929, 1277, 1551, 1728, 2136, 2753
MalI GATC 6 cut(s) 332, 440, 1068, 1128, 1649, 2462
MboI GATC 6 cut(s) 330, 438, 1066, 1126, 1647, 2460
MflI RGATCY 3 cut(s) 438, 1066, 2460
MhlI GDGCHC 2 cut(s) 622, 2549
MlsI TGGCCA 2 cut(s) 727, 2508
MluNI TGGCCA 2 cut(s) 727, 2508
Mly113I GGCGCC 1 cut(s) 2493
MlyI GAGTC 5 cut(s) 68, 212, 467, 1267, 2228
MmeI TCCRAC 1 cut(s) 2011
Mox20I TGGCCA 2 cut(s) 727, 2508
Mph1103I ATGCAT 1 cut(s) 1185
MroXI GAANNNNTTC 2 cut(s) 1930, 2256
MscI TGGCCA 2 cut(s) 727, 2508
MslI CAYNNNNRTG 1 cut(s) 2667
Msp20I TGGCCA 2 cut(s) 727, 2508
MspA1I CMGCKG 1 cut(s) 1839
MspCI CTTAAG 2 cut(s) 595, 1877
MspI CCGG 5 cut(s) 352, 1775, 2184, 2557, 2626
MspR9I CCNGG 4 cut(s) 352, 2003, 2046, 2185
Mva1269I GAATGC 4 cut(s) 1455, 2258, 2326, 2771
MvaI CCWGG 2 cut(s) 2003, 2046
MvnI CGCG 2 cut(s) 774, 2541
MwoI GCNNNNNNNGC 2 cut(s) 1611, 1981
NarI GGCGCC 1 cut(s) 2493
NciI CCSGG 2 cut(s) 352, 2185
NdeII GATC 6 cut(s) 330, 438, 1066, 1126, 1647, 2460
NlaIII CATG 7 cut(s) 68, 405, 626, 746, 1183, 1187, 1938
NlaIV GGNNCC 3 cut(s) 6, 2494, 2696
NmuCI GTSAC 4 cut(s) 640, 902, 929, 1277
NruI TCGCGA 1 cut(s) 2541
NsiI ATGCAT 1 cut(s) 1185
NspI RCATGY 1 cut(s) 746
NspV TTCGAA 2 cut(s) 808, 1029
PaqCI CACCTGC 1 cut(s) 749
PauI GCGCGC 1 cut(s) 772
PceI AGGCCT 2 cut(s) 1614, 1850
PctI GAATGC 4 cut(s) 1455, 2258, 2326, 2771
PdmI GAANNNNTTC 2 cut(s) 1930, 2256
PfeI GAWTC 9 cut(s) 11, 122, 307, 1250, 1490, 1931, 2271, 2338, 2728
PflMI CCANNNNNTGG 2 cut(s) 2573, 2642
PkrI GCNGC 2 cut(s) 523, 1838
PleI GAGTC 5 cut(s) 68, 212, 466, 1267, 2227
PluTI GGCGCC 1 cut(s) 2496
PpsI GAGTC 5 cut(s) 68, 212, 466, 1267, 2227
Ppu21I YACGTR 1 cut(s) 668
PshBI ATTAAT 2 cut(s) 83, 1194
Psp6I CCWGG 2 cut(s) 2001, 2044
PspFI CCCAGC 2 cut(s) 1760, 2438
PspGI CCWGG 2 cut(s) 2001, 2044
PspN4I GGNNCC 3 cut(s) 6, 2494, 2696
PspPI GGNCC 2 cut(s) 1379, 2721
PsrI GAACNNNNNNTAC 2 cut(s) 90, 122
PstI CTGCAG 1 cut(s) 1099
PstNI CAGNNNCTG 1 cut(s) 2341
PsuI RGATCY 3 cut(s) 438, 1066, 2460
PteI GCGCGC 1 cut(s) 772
RruI TCGCGA 1 cut(s) 2541
RsaI GTAC 9 cut(s) 36, 362, 679, 965, 1469, 1570, 1609, 2300, 2385
RsaNI GTAC 9 cut(s) 35, 361, 678, 964, 1468, 1569, 1608, 2299, 2384
RseI CAYNNNNRTG 1 cut(s) 2667
SatI GCNGC 2 cut(s) 522, 1837
Sau3AI GATC 6 cut(s) 330, 438, 1066, 1126, 1647, 2460
Sau96I GGNCC 2 cut(s) 1379, 2721
ScaI AGTACT 1 cut(s) 2300
SchI GAGTC 5 cut(s) 68, 212, 467, 1267, 2228
ScrFI CCNGG 4 cut(s) 352, 2003, 2046, 2185
SduI GDGCHC 2 cut(s) 622, 2549
SfaNI GCATC 4 cut(s) 463, 1166, 1680, 2204
SfcI CTRYAG 3 cut(s) 194, 1095, 1956
SfoI GGCGCC 1 cut(s) 2494
SfuI TTCGAA 2 cut(s) 808, 1029
SinI GGWCC 1 cut(s) 1379
SmiMI CAYNNNNRTG 1 cut(s) 2667
SmlI CTYRAG 9 cut(s) 595, 1454, 1654, 1826, 1877, 1976, 2216, 2294, 2684
SmoI CTYRAG 9 cut(s) 595, 1454, 1654, 1826, 1877, 1976, 2216, 2294, 2684
SseBI AGGCCT 2 cut(s) 1614, 1850
SsiI CCGC 4 cut(s) 848, 1390, 1839, 2423
SspDI GGCGCC 1 cut(s) 2492
SspI AATATT 1 cut(s) 2060
SspMI CTAG 6 cut(s) 119, 1070, 1233, 1322, 1745, 2456
StuI AGGCCT 2 cut(s) 1614, 1850
StyD4I CCNGG 4 cut(s) 350, 2001, 2044, 2183
TaaI ACNGT 9 cut(s) 198, 267, 902, 1538, 1957, 2136, 2204, 2309, 2694
TaiI ACGT 6 cut(s) 564, 670, 862, 1400, 1682, 2232
TaqI TCGA 7 cut(s) 808, 1004, 1029, 1295, 1545, 2304, 2487
TatI WGTACW 4 cut(s) 360, 1568, 1607, 2298
TfiI GAWTC 9 cut(s) 11, 122, 307, 1250, 1490, 1931, 2271, 2338, 2728
TscAI CASTG 3 cut(s) 907, 1252, 1762
TseFI GTSAC 4 cut(s) 640, 902, 929, 1277
TseI GCWGC 2 cut(s) 521, 1836
Tsp45I GTSAC 4 cut(s) 640, 902, 929, 1277
TspDTI ATGAA 6 cut(s) 535, 1275, 1494, 1923, 2685, 2727
TspGWI ACGGA 1 cut(s) 2723
TspRI CASTG 3 cut(s) 907, 1252, 1762
Van91I CCANNNNNTGG 2 cut(s) 2573, 2642
Vha464I CTTAAG 2 cut(s) 595, 1877
VpaK11BI GGWCC 1 cut(s) 1379
VspI ATTAAT 2 cut(s) 83, 1194
XapI RAATTY 5 cut(s) 422, 450, 1223, 2165, 2246
XbaI TCTAGA 1 cut(s) 2455
XceI RCATGY 1 cut(s) 746
XcmI CCANNNNNNNNNTGG 1 cut(s) 1389
XmiI GTMKAC 1 cut(s) 796
XmnI GAANNNNTTC 2 cut(s) 1930, 2256
XspI CTAG 6 cut(s) 119, 1070, 1233, 1322, 1745, 2456
ZrmI AGTACT 1 cut(s) 2300
Zsp2I ATGCAT 1 cut(s) 1185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.