MD03G1016000.v1.1

disease resistance

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Forward (+)
1272582 .. 1275712
3131 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1016000.v1.1.491

Sequence Viewer

Length: 3042 bp
ATGGCTTTGGTTGGAGAGGCTTTGCTCTCCGGTTCGATCAAGCTGCTGTGCGACAAGATTGCCTCCGGACAGTTCATGGATTTCTTCCGGGCAAGAAGGCTCAACCATTCGCTCATGGACAAACTGAAGGTGACTTTGATGACACTTCATGCAGTACTCGACGACGCAGAGGAGAAGCAGATTGTCAACGATGCCGTGGCGATGTGGCTTGATGAACTCAAAGATGCTGTGTTCGATGCGCAGGACCTGGTGGATGAGATGGATACTGAAGCTTTGCGTCGCAAGGTGAAAGATCAGACTAAGCAAACCCAGGTGTGCAACTTCCTCTCTACCTCTCTTAGTCCTTTTAATTATAAGGGCATGAATGGTAGGATAAAGGATTTATTTCAGAGGTTAGAACACCTTGCAGAACAGCGAAATCGCCTTGGTCTTAGAGAAGGTGTTGGGCGCAAGGTTTCACAAAGAACTCCCACAACTTCTGTAGTTGAGGAAGGATTCTGTCCCTATGGTAGGGATGCGGATAAAGAAAAGTTAAAAACACTACTGCTGCCATCTGACAATGAAAGTAGCAGTAATTTTTCTGTAGTCCCGATAGTCGGAATGGGCGGGGTTGGTAAGACAACCCTTGCTCAACTCCTTTACAATGATGAACAGGTTAAAGAGCATTTTGACATTCATGCTTGGGTTTGTGTTTCCGAACAGTATGATGCTTTGAGGGTGATTAAGACCCTTAGTGAGCAAATCACTGAGAAATCTTGTGATATCTCAGATATGAATTCCCTTGAAATTCGACTAAGGGAACAAGTAAGGAGGGAACAAGTAAGGGATATCTCAGATATGAATTCCCTTGAAATTCGACTAAGGGAGCAAGTAAGGGGAAAGACATTTTTATTTGTCCTGGATGACCTTTGGAATGAGAGCTATGACGAGTGGGATCGTCTACGAACTCTTTTCACTTATGGGGCGAAGGGAAGTAAAGTCATTGTAACAACAAGGAGTAGACATGTTGCATCCACCGTGTACAATACTATTCCAACTCATGACTTGGAAAAATTGTCGGACGATGATTGCTGGTTGTTACTGACAAAACATGCATTTAGAAATGAAAAATCTAGTGCACATCCAGACTTGGAAGAAGTTGGTAAGAAAATTGCACGCAAGTGCAACGGTTTGCCTTTAGCTTCAAAAACACTAGGGAGTCTCCTAGGTTGCAACCTAGACTACAAGGAATGGAATCACATATTGGATAGCAATCTTTGGGATCTACCACACGCTAATAGTGTTCTTCCTTCTCTAAGATTGAGTTACCATTATCTTCCAAGTTACTTGAAACGATGCTTTGCTTATTGCTCAATTTTTCCAAAGGGGTATGAATTGGAAAAGGAAAATGTTATTCTATTATGGGTGGCAGAAGGTTTAATTCCACAATCAGAGAGAGAGAAAGCAATGGAGGAGGTTGGTGAAAGATACTTTGATGAACTGTTATCACGATCACTATTTCAAAAACCAAGATTGGATCAACCAAGTTTCACTATGCATGATCTAATCAATGACTTGGCTATGTTTGTGTCTAGAGAGTTTTGTTTTAGATTGGATCAGAAGCATTCGCATGAAGTTCCTAAAAGAGTTCGCCATTTCTCGTATATGAGAGGAAATATTGATACATCTTCAAAATTTCAGCCATTAGGTGGAGTGAAGTGTTTGCACACGTTCTTTCCAGTGTCTTTAACACCATATGATAACACAAGGGATGATGAACTATATGTAAGCAATAAGGTTCTAGATGATTTACTCCCAACACAAAAATGTTTACGGGCATTTTCATTGTCAAGATATAAAAATATCAATCACTTACCAAATTCCATTGGTAACCACATACACTTGCGCTACATTGATCTCTCTTATACGACAATTAAAATGTTACCAGATACAATGTGTAGCCTCTACAATTTACAAACTCTGCTATTGTTGGGTTGTTCTTCTCTTGTTAAATTGCCTGCAAACATGAAGAAATTGATTCATTTGCGTCATCTTGATATTCGTGGAACTGACATAAACGAGATGCCTGTGCATATGGGTAGATTAAAAAGTTTGAGAACGCTTACAGCTTTTGTATTGGGAAAATCTACTGGGTCAAACATTGGAGAACTGAGGGAGTTGTCGCACCTACGAGGAAAAATTTCTATCTTGAATCTACAAAATGTAGTCGGTGCTATTGATGCCTTGCTGAAGGATAAGAAAGATCTCAATGAGGTAGAGTTGGCATGGGGTTATGAAGTTTCCAATGATTTTGTGAAAAAGAAACATGTACTTGAAAGACTACAACCTCCCGTAAATTTGGTGAAACTAACCATCAAGTGGTATGGTGGAACCAGTTTCCCGAATTGGGTGGGAGACTCGTCCTTCTCCAACTTACAAGTGATGCGTCTCAGCGGCTGTAGTGATTGCAGTTCACTGCCACCAGTTGGTCGGCTACCTGCTCTCAAAGAGCTTTACGTAGGAGGGATGACGTCAATTACCAGTGTTGGTGTTGAGTTCTATGGTGGAAATCAACCATTTCAATCTTTAGAGAAGCTAGAGTTTGTGTATATGCCAAAGTGGGAGGAATGGCTGCCGAGTCCAAGTGGAGGTGAAAGTCCGGACTTTCCTCGTCTTAAGGAGTTGATTTTAGACCAATGTCCAAAACTGAGAGGAAACTTGCCCACTCATCTTCCTTCCTTGGGGAACCTTGGGGTCTATCGATCTAATGTACTGCATTGGTCGATGGAGACGCTGCCGTCTCTTCAGAAGCTTGATATTGATATTGTTGGCGGGAAAGAGTGGCTGCCGCAAATGGTGCGCAACAGCAATTGTCTTCAAAGTATGACTCTTTCTTTCTGTTCCTCACTCTTGTCGCTCCCTACAAATGGTCTGCCCACCACGCTGACGTCACTCCGTATATCATATTGCAAGAAGTTAGAATTCCTATGCGAGATGATGGCCAAATTGACTTCCCTTCAGTCTTTGCGTCTATCCAACAGCTGTGATTCTCTGAGGTCATGA

Protein Analysis

1014

Amino Acids

115.36

Weight (kDa)

7.73

Isoelectric Point (pI)

40.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 35 - 101 1.3e-16 Rx N-terminal domain
AAA_16 PF13191 169 - 320 5e-07 AAA ATPase domain
NB-ARC PF00931 173 - 369 1.7e-37 NB-ARC domain
WHD_DRP PF23559 452 - 520 5.4e-25 Disease resistance protein Winged helix domain
LRR_14 PF23598 602 - 935 8.7e-28 Leucine-rich repeat region
LRR_R13L1-DRL21 PF25019 714 - 836 6.8e-33 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000035)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G14470 AT3G14470
fragaria_vesca FvH4_1g01220 FvH4_1g01230 FvH4_3g24551 FvH4_3g24552 FvH4_4g29310 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_6g39860 FvH4_6g39861 FvH4_7g11380
malus_domestica MD00G1072900.v1.1 MD00G1073100.v1.1 MD00G1120600.v1.1 MD00G1120900.v1.1 MD00G1121000.v1.1 MD00G1121200.v1.1 MD00G1152300.v1.1 MD00G1203600.v1.1 MD00G1203700.v1.1 MD02G1250900.v1.1 MD02G1251900.v1.1 MD02G1252800.v1.1 MD02G1277100.v1.1 MD02G1277200.v1.1 MD02G1277400.v1.1 MD02G1286100.v1.1 MD02G1286200.v1.1 MD02G1286900.v1.1 MD03G1006200.v1.1 MD03G1015300.v1.1 MD03G1015500.v1.1 MD03G1015900.v1.1 MD03G1016000.v1.1 MD03G1024900.v1.1 MD03G1025000.v1.1 MD03G1025500.v1.1 MD03G1026000.v1.1 MD03G1026500.v1.1 MD03G1031800.v1.1 MD03G1072200.v1.1 MD07G1028000.v1.1 MD07G1028300.v1.1 MD07G1029400.v1.1 MD07G1029500.v1.1 MD07G1040300.v1.1 MD07G1044500.v1.1 MD07G1045100.v1.1 MD07G1045500.v1.1 MD07G1050700.v1.1 MD07G1050900.v1.1 MD07G1055800.v1.1 MD07G1056200.v1.1 MD07G1056600.v1.1 MD07G1057100.v1.1 MD07G1057200.v1.1 MD08G1056500.v1.1 MD08G1056600.v1.1 MD08G1056700.v1.1 MD08G1056800.v1.1 MD08G1128800.v1.1 MD08G1129500.v1.1 MD08G1130000.v1.1 MD11G1066700.v1.1 MD11G1066800.v1.1 MD11G1066900.v1.1 MD11G1067000.v1.1 MD11G1067500.v1.1 MD11G1069800.v1.1 MD11G1070400.v1.1 MD11G1071100.v1.1 MD11G1071200.v1.1 MD11G1077200.v1.1 MD11G1077700.v1.1 MD11G1077900.v1.1 MD11G1078100.v1.1 MD11G1078300.v1.1 MD11G1078500.v1.1 MD11G1135200.v1.1 MD11G1135400.v1.1 MD11G1152900.v1.1 MD11G1153000.v1.1 MD17G1056800.v1.1
prunus_persica Prupe.2G037800_v2.0.a1 Prupe.2G037800_v2.0.a1 Prupe.2G037800_v2.0.a1 Prupe.2G037800_v2.0.a1 Prupe.2G040500_v2.0.a1 Prupe.2G040700_v2.0.a1 Prupe.2G043000_v2.0.a1 Prupe.2G043100_v2.0.a1 Prupe.2G043200_v2.0.a1 Prupe.2G046000_v2.0.a1 Prupe.2G046300_v2.0.a1 Prupe.2G046400_v2.0.a1 Prupe.2G046400_v2.0.a1 Prupe.2G046700_v2.0.a1 Prupe.2G046900_v2.0.a1 Prupe.2G051100_v2.0.a1 Prupe.2G052200_v2.0.a1 Prupe.2G053600_v2.0.a1 Prupe.2G053600_v2.0.a1 Prupe.2G053600_v2.0.a1 Prupe.2G053600_v2.0.a1 Prupe.2G053700_v2.0.a1 Prupe.2G053800_v2.0.a1 Prupe.2G053900_v2.0.a1 Prupe.2G054000_v2.0.a1 Prupe.2G054100_v2.0.a1 Prupe.2G054200_v2.0.a1 Prupe.2G054300_v2.0.a1 Prupe.2G054300_v2.0.a1 Prupe.2G054300_v2.0.a1 Prupe.2G054300_v2.0.a1 Prupe.2G054500_v2.0.a1 Prupe.2G054700_v2.0.a1 Prupe.4G286000_v2.0.a1 Prupe.4G286000_v2.0.a1 Prupe.4G286000_v2.0.a1 Prupe.6G129800_v2.0.a1 Prupe.6G130000_v2.0.a1 Prupe.6G130000_v2.0.a1
pyrus_communis pycom02g23740 pycom02g23750 pycom02g24320 pycom03g00620 pycom03g01280 pycom03g01320 pycom03g01350 pycom03g01360 pycom03g01370 pycom03g01380 pycom03g01390 pycom03g02160 pycom03g02170 pycom03g05850 pycom03g09810 pycom07g02120 pycom07g02790 pycom07g02800 pycom07g03210 pycom07g03660 pycom07g03670 pycom07g04350 pycom08g10780 pycom08g10840 pycom08g10910 pycom11g05650 pycom11g05670 pycom11g05800 pycom11g05880 pycom11g05890 pycom11g05940 pycom11g06490 pycom11g06500 pycom11g06520 pycom11g06560 pycom11g06570 pycom11g11230 pycom11g13650 pycom17g05700
rosa_chinensis RchiOBHm_Chr1g0318341 RchiOBHm_Chr1g0318901 RchiOBHm_Chr1g0318931 RchiOBHm_Chr1g0327301 RchiOBHm_Chr1g0328491 RchiOBHm_Chr1g0336761 RchiOBHm_Chr1g0336831 RchiOBHm_Chr1g0340721 RchiOBHm_Chr1g0342461 RchiOBHm_Chr1g0342471 RchiOBHm_Chr1g0342481 RchiOBHm_Chr1g0346131 RchiOBHm_Chr1g0346191 RchiOBHm_Chr1g0346211 RchiOBHm_Chr1g0346241 RchiOBHm_Chr1g0346261 RchiOBHm_Chr1g0346281 RchiOBHm_Chr1g0346461 RchiOBHm_Chr1g0346471 RchiOBHm_Chr1g0346481 RchiOBHm_Chr1g0346501 RchiOBHm_Chr1g0347691 RchiOBHm_Chr1g0347701 RchiOBHm_Chr1g0347751 RchiOBHm_Chr1g0347791 RchiOBHm_Chr1g0347971 RchiOBHm_Chr1g0349661 RchiOBHm_Chr1g0349741 RchiOBHm_Chr1g0357561 RchiOBHm_Chr3g0492601 RchiOBHm_Chr5g0039181 RchiOBHm_Chr5g0039231 RchiOBHm_Chr5g0039241 RchiOBHm_Chr5g0039251 RchiOBHm_Chr5g0039531 RchiOBHm_Chr5g0044001 RchiOBHm_Chr5g0044571 RchiOBHm_Chr5g0044611 RchiOBHm_Chr5g0044631 RchiOBHm_Chr5g0044641 RchiOBHm_Chr5g0044651 RchiOBHm_Chr5g0044661 RchiOBHm_Chr5g0044681 RchiOBHm_Chr5g0045221 RchiOBHm_Chr5g0045901 RchiOBHm_Chr5g0045991 RchiOBHm_Chr5g0046001 RchiOBHm_Chr5g0046011
rosa_laevigata RLG00000028715 RLG00000028718 RLG00000029034 RLG00000029926 RLG00000030516 RLG00000034285 RLG00000034288
rosa_multiflora Rmu_co7987576.1_g000001 Rmu_co8028038.1_g000001 Rmu_co8104858.1_g000001 Rmu_co8185828.1_g000001 Rmu_co8227651.1_g000001 Rmu_co8235061.1_g000001 Rmu_co8246845.1_g000001 Rmu_co8254315.1_g000001 Rmu_co8284899.1_g000001 Rmu_co8401461.1_g000001 Rmu_co8475625.1_g000001 Rmu_co8502681.1_g000001 Rmu_sc0000250.1_g000005 Rmu_sc0000492.1_g000001 Rmu_sc0000533.1_g000004 Rmu_sc0000795.1_g000114 Rmu_sc0000831.1_g000039 Rmu_sc0000907.1_g000014 Rmu_sc0000907.1_g000034 Rmu_sc0001035.1_g000007 Rmu_sc0001035.1_g000011 Rmu_sc0001035.1_g000012 Rmu_sc0001099.1_g000003 Rmu_sc0001157.1_g000008 Rmu_sc0001212.1_g000016 Rmu_sc0001212.1_g000017 Rmu_sc0001304.1_g000027 Rmu_sc0001304.1_g000033 Rmu_sc0001773.1_g000019 Rmu_sc0001836.1_g000069 Rmu_sc0001856.1_g000004 Rmu_sc0002286.1_g000003 Rmu_sc0002286.1_g000004 Rmu_sc0002286.1_g000005 Rmu_sc0002286.1_g000007 Rmu_sc0002286.1_g000015 Rmu_sc0002495.1_g000025 Rmu_sc0002545.1_g000008 Rmu_sc0002545.1_g000009 Rmu_sc0002662.1_g000009 Rmu_sc0003363.1_g000019 Rmu_sc0003363.1_g000022 Rmu_sc0003600.1_g000057 Rmu_sc0003809.1_g000036 Rmu_sc0003809.1_g000037 Rmu_sc0005008.1_g000026 Rmu_sc0005008.1_g000028 Rmu_sc0005028.1_g000001 Rmu_sc0005144.1_g000022 Rmu_sc0005167.1_g000004 Rmu_sc0005626.1_g000005 Rmu_sc0005626.1_g000018 Rmu_sc0006228.1_g000011 Rmu_sc0006609.1_g000007 Rmu_sc0006609.1_g000009 Rmu_sc0006609.1_g000015 Rmu_sc0006609.1_g000016 Rmu_sc0006609.1_g000017 Rmu_sc0006609.1_g000018 Rmu_sc0007060.1_g000003 Rmu_sc0007318.1_g000011 Rmu_sc0007992.1_g000002 Rmu_sc0009172.1_g000001 Rmu_sc0010151.1_g000010 Rmu_sc0010151.1_g000011 Rmu_sc0011778.1_g000001 Rmu_sc0011778.1_g000005 Rmu_sc0011778.1_g000009 Rmu_sc0012293.1_g000001 Rmu_sc0012293.1_g000002 Rmu_sc0016606.1_g000001 Rmu_sc0016836.1_g000001 Rmu_sc0021084.1_g000008 Rmu_sc0021449.1_g000001 Rmu_sc0026523.1_g000001 Rmu_sc0027133.1_g000003 Rmu_sc0038674.1_g000001 Rmu_ssc0000255.1_g000053 Rmu_ssc0000255.1_g000063 Rmu_ssc0000255.1_g000064 Rmu_ssc0000263.1_g000004 Rmu_ssc0000400.1_g000027
rosa_roxburghii Rroxscaffold_1G00035290 Rroxscaffold_1G00036350 Rroxscaffold_1G00036360 Rroxscaffold_1G00036400 Rroxscaffold_1G00036460 Rroxscaffold_1G00037000 Rroxscaffold_1G00040440 Rroxscaffold_1G00041890 Rroxscaffold_1G00041920 Rroxscaffold_4G00307460 Rroxscaffold_4G00307500 Rroxscaffold_4G00308500 Rroxscaffold_4G00308510 Rroxscaffold_4G00308770 Rroxscaffold_4G00313020 Rroxscaffold_4G00321580 Rroxscaffold_4G00323030 Rroxscaffold_4G00326850 Rroxscaffold_4G00328770 Rroxscaffold_4G00328780 Rroxscaffold_4G00329310 Rroxscaffold_5G00352110
rosa_rugosa Rorug01G0020700 Rorug01G0023000 Rorug01G0023100 Rorug01G0023200 Rorug01G0023300 Rorug01G0023400 Rorug01G0024500 Rorug01G0025100 Rorug01G0025200 Rorug01G0025400 Rorug01G0025400 Rorug01G0064700 Rorug01G0065300 Rorug01G0127600 Rorug01G0128000 Rorug01G0148000.1 Rorug01G0150500.1 Rorug01G0161600.1 Rorug01G0161800.1 Rorug01G0163600.1 Rorug01G0178300 Rorug01G0178500 Rorug01G0178700 Rorug01G0179900 Rorug01G0180200 Rorug01G0180300 Rorug01G0180400 Rorug01G0189000 Rorug01G0189100 Rorug01G0190500 Rorug01G0204800 Rorug05G0177200 Rorug05G0210300 Rorug05G0210300 Rorug05G0210300 Rorug05G0215400 Rorug05G0215400 Rorug05G0215400 Rorug05G0215400 Rorug05G0215500 Rorug05G0215600 Rorug05G0215800 Rorug05G0215900 Rorug05G0215900 Rorug05G0216000 Rorug05G0216200 Rorug05G0216300 Rorug05G0221900 Rorug07G0276700
rosa_samantha Rh1BG028400 Rh1BG033500 Rh1BG065100 Rh1BG073100 Rh1BG073200 Rh1BG117000 Rh1BG164000 Rh1BG164200 Rh1BG172100 Rh1BG173900 Rh1BG174100 Rh1BG188400 Rh1CG036000 Rh1CG036500 Rh1CG089900 Rh1CG140200 Rh1CG164700 Rh1CG182600 Rh1CG182900 Rh1CG183400 Rh1CG191300 Rh1CG192000 Rh1CG207700 Rh1DG033800 Rh1DG033900 Rh1DG096000 Rh5AG299900 Rh5AG304500 Rh5AG307100 Rh5AG307500 Rh5CG301600 Rh5CG329800 Rh5CG333800 Rh5DG311400 Rh5DG316300 Rh5DG316400 Rh5DG316700 Rh5DG316800 Rh5DG316900 Rh5DG326100 Rh7AG431900 Rh7CG451000
rosa_wichuraiana Rw0G007840 Rw0G009850 Rw0G013000 Rw0G015090 Rw0G021190 Rw1G002610 Rw1G004320 Rw1G006520 Rw1G007250 Rw1G012020 Rw1G013830 Rw1G014770 Rw1G016300 Rw1G016600 Rw1G016650 Rw1G017290 Rw1G017420 Rw1G017630 Rw1G017650 Rw1G017660 Rw1G017690 Rw1G017700 Rw1G018960 Rw5G024660 Rw5G024700 Rw5G024720 Rw5G024740 Rw5G024980 Rw5G027710 Rw5G027720 Rw5G027730 Rw5G027740 Rw5G027750 Rw5G028130 Rw5G028740 Rw5G028750 Rw5G028790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 354
AasI GACNNNNNNGTC 1 cut(s) 2776
AatII GACGTC 2 cut(s) 2513, 2930
Acc16I TGCGCA 2 cut(s) 240, 2840
Acc36I ACCTGC 1 cut(s) 2485
AccB7I CCANNNNNTGG 3 cut(s) 1688, 2358, 2465
AccI GTMKAC 2 cut(s) 940, 1000
AccIII TCCGGA 2 cut(s) 65, 2638
AciI CCGC 5 cut(s) 518, 606, 2433, 2811, 2828
AclWI GGATC 4 cut(s) 942, 1269, 1524, 1602
AcoI YGGCCR 1 cut(s) 2979
AcsI RAATTY 9 cut(s) 775, 786, 841, 852, 1673, 1858, 2178, 2335, 2960
AcuI CTGAAG 5 cut(s) 146, 288, 2249, 2768, 2981
AcyI GRCGYC 2 cut(s) 2510, 2927
AfaI GTAC 4 cut(s) 156, 1022, 2310, 2751
AfiI CCNNNNNNNGG 9 cut(s) 510, 596, 1688, 2358, 2386, 2465, 2627, 2720, 2906
AflII CTTAAG 1 cut(s) 2654
AflIII ACRYGT 3 cut(s) 1003, 1707, 2305
AjnI CCWGG 3 cut(s) 246, 309, 897
AjuI GAANNNNNNNTTGG 2 cut(s) 1226, 1258
AleI CACNNNNGTG 1 cut(s) 1159
AluBI AGCT 9 cut(s) 43, 272, 921, 1181, 2108, 2491, 2575, 2791, 3021
AluI AGCT 9 cut(s) 43, 272, 921, 1181, 2108, 2491, 2575, 2791, 3021
Alw21I GWGCWC 1 cut(s) 1120
Alw26I GTCTC 5 cut(s) 1205, 2388, 2432, 2762, 2784
Alw44I GTGCAC 1 cut(s) 1116
AlwI GGATC 4 cut(s) 942, 1269, 1524, 1602
AlwNI CAGNNNCTG 2 cut(s) 247, 2436
Aor13HI TCCGGA 2 cut(s) 65, 2638
AoxI GGCC 1 cut(s) 2979
ApaLI GTGCAC 1 cut(s) 1116
ApeKI GCWGC 5 cut(s) 43, 547, 2611, 2773, 2824
ApoI RAATTY 9 cut(s) 775, 786, 841, 852, 1673, 1858, 2178, 2335, 2960
Asp700I GAANNNNTTC 1 cut(s) 2179
AspA2I CCTAGG 1 cut(s) 1204
AspLEI GCGC 4 cut(s) 241, 450, 1887, 2841
AspS9I GGNCC 1 cut(s) 244
AsuC2I CCSGG 1 cut(s) 89
AsuHPI GGTGA 6 cut(s) 142, 298, 730, 1472, 2353, 2642
AvaII GGWCC 1 cut(s) 244
AvrII CCTAGG 1 cut(s) 1204
BaeGI GKGCMC 1 cut(s) 1120
BalI TGGCCA 1 cut(s) 2981
BbsI GAAGAC 1 cut(s) 2846
Bbv12I GWGCWC 1 cut(s) 1120
BbvI GCAGC 5 cut(s) 30, 534, 2598, 2760, 2811
BccI CCATC 5 cut(s) 253, 559, 2360, 2758, 2971
BceAI ACGGC 2 cut(s) 179, 2761
BcgI CGANNNNNNTGC 4 cut(s) 25, 41, 59, 75
BciT130I CCWGG 3 cut(s) 248, 311, 899
BciVI GTATCC 1 cut(s) 256
BcnI CCSGG 1 cut(s) 89
BcoDI GTCTC 5 cut(s) 1205, 2388, 2432, 2762, 2784
BfaI CTAG 7 cut(s) 1113, 1193, 1205, 1217, 1572, 1781, 2576
BfmI CTRYAG 3 cut(s) 480, 582, 2437
BfrI CTTAAG 1 cut(s) 2654
BfuAI ACCTGC 1 cut(s) 2485
BfuI GTATCC 1 cut(s) 256
BglII AGATCT 1 cut(s) 2242
BisI GCNGC 7 cut(s) 44, 548, 2434, 2612, 2774, 2825, 2828
BlnI CCTAGG 1 cut(s) 1204
BlsI GCNGC 7 cut(s) 45, 549, 2435, 2613, 2775, 2826, 2829
BmcAI AGTACT 1 cut(s) 156
Bme1390I CCNGG 4 cut(s) 89, 248, 311, 899
Bme18I GGWCC 1 cut(s) 244
BmgT120I GGNCC 1 cut(s) 244
BmiI GGNNCC 2 cut(s) 2371, 2726
BmrFI CCNGG 4 cut(s) 89, 248, 311, 899
BmrI ACTGGG 1 cut(s) 2139
BmuI ACTGGG 1 cut(s) 2139
BoxI GACNNNNGTC 1 cut(s) 2676
BpiI GAAGAC 1 cut(s) 2846
BpuMI CCSGG 1 cut(s) 89
Bsa29I ATCGAT 1 cut(s) 2740
BsaAI YACGTR 1 cut(s) 2497
BsaBI GATNNNNATC 1 cut(s) 1251
BsaHI GRCGYC 2 cut(s) 2510, 2927
BsaJI CCNNGG 6 cut(s) 195, 309, 424, 1204, 2718, 2728
BsaWI WCCGGW 3 cut(s) 29, 65, 2638
Bsc4I CCNNNNNNNGG 9 cut(s) 510, 596, 1688, 2358, 2386, 2465, 2627, 2720, 2906
Bse1I ACTGG 5 cut(s) 1718, 2134, 2373, 2462, 2520
Bse3DI GCAATG 1 cut(s) 1452
Bse8I GATNNNNATC 1 cut(s) 1251
BseAI TCCGGA 2 cut(s) 65, 2638
BseBI CCWGG 3 cut(s) 248, 311, 899
BseCI ATCGAT 1 cut(s) 2740
BseDI CCNNGG 6 cut(s) 195, 309, 424, 1204, 2718, 2728
BseGI GGATG 7 cut(s) 259, 520, 907, 1010, 1120, 1756, 2511
BseJI GATNNNNATC 1 cut(s) 1251
BseLI CCNNNNNNNGG 9 cut(s) 510, 596, 1688, 2358, 2386, 2465, 2627, 2720, 2906
BseMI GCAATG 1 cut(s) 1452
BseMII CTCAG 7 cut(s) 738, 780, 846, 2141, 2443, 2678, 3023
BseNI ACTGG 5 cut(s) 1718, 2134, 2373, 2462, 2520
BseRI GAGGAG 2 cut(s) 185, 1466
BseSI GKGCMC 1 cut(s) 1120
BseXI GCAGC 5 cut(s) 30, 534, 2598, 2760, 2811
BshFI GGCC 1 cut(s) 2981
BshVI ATCGAT 1 cut(s) 2740
BsiHKAI GWGCWC 1 cut(s) 1120
BsiSI CCGG 4 cut(s) 30, 66, 88, 2639
BslFI GGGAC 2 cut(s) 486, 572
BslI CCNNNNNNNGG 9 cut(s) 510, 596, 1688, 2358, 2386, 2465, 2627, 2720, 2906
BsmAI GTCTC 5 cut(s) 1205, 2388, 2432, 2762, 2784
BsmBI CGTCTC 3 cut(s) 2432, 2762, 2784
BsmFI GGGAC 2 cut(s) 486, 572
BsmI GAATGC 1 cut(s) 1603
BsnI GGCC 1 cut(s) 2981
Bsp1286I GDGCHC 1 cut(s) 1120
Bsp13I TCCGGA 2 cut(s) 65, 2638
Bsp1407I TGTACA 1 cut(s) 1020
BspACI CCGC 5 cut(s) 518, 606, 2433, 2811, 2828
BspANI GGCC 1 cut(s) 2981
BspCNI CTCAG 7 cut(s) 739, 779, 845, 2142, 2442, 2679, 3024
BspDI ATCGAT 1 cut(s) 2740
BspEI TCCGGA 2 cut(s) 65, 2638
BspHI TCATGA 2 cut(s) 1039, 3038
BspLI GGNNCC 2 cut(s) 2371, 2726
BspMI ACCTGC 1 cut(s) 2485
BspPI GGATC 4 cut(s) 942, 1269, 1524, 1602
BspTI CTTAAG 1 cut(s) 2654
BsrDI GCAATG 1 cut(s) 1452
BsrGI TGTACA 1 cut(s) 1020
BsrI ACTGG 5 cut(s) 1718, 2134, 2373, 2462, 2520
BssECI CCNNGG 6 cut(s) 195, 309, 424, 1204, 2718, 2728
BssNI GRCGYC 2 cut(s) 2510, 2927
BssT1I CCWWGG 4 cut(s) 424, 1204, 2718, 2728
Bst2UI CCWGG 3 cut(s) 248, 311, 899
Bst4CI ACNGT 5 cut(s) 72, 702, 1018, 1169, 1482
Bst6I CTCTTC 1 cut(s) 2787
BstACI GRCGYC 2 cut(s) 2510, 2927
BstAFI CTTAAG 1 cut(s) 2654
BstAPI GCANNNNNTGC 1 cut(s) 2836
BstAUI TGTACA 1 cut(s) 1020
BstBAI YACGTR 1 cut(s) 2497
BstC8I GCNNGC 2 cut(s) 1156, 1998
BstDSI CCRYGG 1 cut(s) 195
BstEII GGTNACC 1 cut(s) 1868
BstENI CCTNNNNNAGG 1 cut(s) 508
BstF5I GGATG 7 cut(s) 259, 520, 907, 1010, 1120, 1756, 2511
BstHHI GCGC 4 cut(s) 241, 450, 1887, 2841
BstMAI GTCTC 5 cut(s) 1205, 2388, 2432, 2762, 2784
BstMWI GCNNNNNNNGC 3 cut(s) 2219, 2836, 2920
BstNI CCWGG 3 cut(s) 248, 311, 899
BstNSI RCATGY 3 cut(s) 1007, 1094, 2309
BstPAI GACNNNNGTC 1 cut(s) 2676
BstPI GGTNACC 1 cut(s) 1868
BstSCI CCNGG 4 cut(s) 87, 246, 309, 897
BstSFI CTRYAG 3 cut(s) 480, 582, 2437
BstSLI GKGCMC 1 cut(s) 1120
BstSNI TACGTA 1 cut(s) 2497
BstV1I GCAGC 5 cut(s) 30, 534, 2598, 2760, 2811
BstV2I GAAGAC 1 cut(s) 2846
BstX2I RGATCY 2 cut(s) 1261, 2242
BstYI RGATCY 2 cut(s) 1261, 2242
Bsu15I ATCGAT 1 cut(s) 2740
BsuI GTATCC 1 cut(s) 256
BsuRI GGCC 1 cut(s) 2981
BsuTUI ATCGAT 1 cut(s) 2740
BtgI CCRYGG 1 cut(s) 195
BtgZI GCGATG 1 cut(s) 215
BtsCI GGATG 7 cut(s) 259, 520, 907, 1010, 1120, 1756, 2511
BtsI GCAGTG 1 cut(s) 2453
BtsIMutI CAGTG 4 cut(s) 744, 1725, 2453, 2527
BveI ACCTGC 1 cut(s) 2485
Cac8I GCNNGC 2 cut(s) 1156, 1998
CaiI CAGNNNCTG 2 cut(s) 247, 2436
CciI TCATGA 2 cut(s) 1039, 3038
CfoI GCGC 4 cut(s) 241, 450, 1887, 2841
Cfr13I GGNCC 1 cut(s) 244
ClaI ATCGAT 1 cut(s) 2740
CseI GACGC 6 cut(s) 173, 266, 2015, 2414, 2779, 2996
CsiI ACCWGGT 1 cut(s) 246
Csp6I GTAC 4 cut(s) 155, 1021, 2309, 2750
CviQI GTAC 4 cut(s) 155, 1021, 2309, 2750
DrdI GACNNNNNNGTC 1 cut(s) 2776
DseDI GACNNNNNNGTC 1 cut(s) 2776
EaeI YGGCCR 1 cut(s) 2979
Eam1104I CTCTTC 1 cut(s) 2787
EarI CTCTTC 1 cut(s) 2787
Eco105I TACGTA 1 cut(s) 2497
Eco130I CCWWGG 4 cut(s) 424, 1204, 2718, 2728
Eco32I GATATC 2 cut(s) 763, 829
Eco47I GGWCC 1 cut(s) 244
Eco57I CTGAAG 5 cut(s) 146, 288, 2249, 2768, 2981
Eco91I GGTNACC 1 cut(s) 1868
EcoNI CCTNNNNNAGG 1 cut(s) 508
EcoO109I RGGNCCY 1 cut(s) 244
EcoO65I GGTNACC 1 cut(s) 1868
EcoRI GAATTC 3 cut(s) 775, 841, 2960
EcoRII CCWGG 3 cut(s) 246, 309, 897
EcoRV GATATC 2 cut(s) 763, 829
EcoT14I CCWWGG 4 cut(s) 424, 1204, 2718, 2728
EcoT22I ATGCAT 2 cut(s) 1096, 1539
ErhI CCWWGG 4 cut(s) 424, 1204, 2718, 2728
Esp3I CGTCTC 3 cut(s) 2432, 2762, 2784
FaqI GGGAC 2 cut(s) 486, 572
FauI CCCGC 2 cut(s) 599, 2804
FauNDI CATATG 2 cut(s) 1735, 2073
FblI GTMKAC 2 cut(s) 940, 1000
Fnu4HI GCNGC 7 cut(s) 44, 548, 2434, 2612, 2774, 2825, 2828
FokI GGATG 7 cut(s) 266, 527, 914, 997, 1107, 1763, 2518
Fsp4HI GCNGC 7 cut(s) 44, 548, 2434, 2612, 2774, 2825, 2828
FspBI CTAG 7 cut(s) 1113, 1193, 1205, 1217, 1572, 1781, 2576
FspI TGCGCA 2 cut(s) 240, 2840
GlaI GCGC 4 cut(s) 240, 449, 1886, 2840
GluI GCNGC 7 cut(s) 44, 548, 2434, 2612, 2774, 2825, 2828
HaeIII GGCC 1 cut(s) 2981
HapII CCGG 4 cut(s) 30, 66, 88, 2639
HgaI GACGC 6 cut(s) 173, 266, 2015, 2414, 2779, 2996
HhaI GCGC 4 cut(s) 241, 450, 1887, 2841
Hin1I GRCGYC 2 cut(s) 2510, 2927
Hin6I GCGC 4 cut(s) 239, 448, 1885, 2839
HinP1I GCGC 4 cut(s) 239, 448, 1885, 2839
HincII GTYRAC 1 cut(s) 187
HindII GTYRAC 1 cut(s) 187
HindIII AAGCTT 2 cut(s) 270, 2789
HinfI GANTC 9 cut(s) 495, 1198, 1234, 2017, 2191, 2396, 2617, 2866, 3026
HpaII CCGG 4 cut(s) 30, 66, 88, 2639
HphI GGTGA 6 cut(s) 142, 298, 730, 1472, 2353, 2642
Hpy166II GTNNAC 7 cut(s) 187, 941, 1001, 1021, 1118, 1811, 2453
Hpy8I GTNNAC 7 cut(s) 187, 941, 1001, 1021, 1118, 1811, 2453
Hpy99I CGWCG 3 cut(s) 164, 167, 282
HpyCH4III ACNGT 5 cut(s) 72, 702, 1018, 1169, 1482
HpyCH4IV ACGT 4 cut(s) 1709, 2496, 2510, 2927
HpyF10VI GCNNNNNNNGC 3 cut(s) 2219, 2836, 2920
HpySE526I ACGT 4 cut(s) 1709, 2496, 2510, 2927
Hsp92I GRCGYC 2 cut(s) 2510, 2927
HspAI GCGC 4 cut(s) 239, 448, 1885, 2839
Kpn2I TCCGGA 2 cut(s) 65, 2638
LmnI GCTCC 2 cut(s) 865, 2901
Lsp1109I GCAGC 5 cut(s) 30, 534, 2598, 2760, 2811
MabI ACCWGGT 1 cut(s) 246
MaeI CTAG 7 cut(s) 1113, 1193, 1205, 1217, 1572, 1781, 2576
MaeII ACGT 4 cut(s) 1709, 2496, 2510, 2927
MaeIII GTNAC 8 cut(s) 130, 985, 1077, 1304, 1322, 1868, 1920, 2928
MfeI CAATTG 1 cut(s) 2848
MflI RGATCY 2 cut(s) 1261, 2242
MhlI GDGCHC 1 cut(s) 1120
MlsI TGGCCA 1 cut(s) 2981
MluNI TGGCCA 1 cut(s) 2981
MlyI GAGTC 4 cut(s) 1207, 2390, 2626, 2860
MmeI TCCRAC 5 cut(s) 577, 1038, 1058, 2433, 3039
Mox20I TGGCCA 1 cut(s) 2981
Mph1103I ATGCAT 2 cut(s) 1096, 1539
MroI TCCGGA 2 cut(s) 65, 2638
MroXI GAANNNNTTC 1 cut(s) 2179
MscI TGGCCA 1 cut(s) 2981
MslI CAYNNNNRTG 3 cut(s) 1159, 1608, 1804
Msp20I TGGCCA 1 cut(s) 2981
MspA1I CMGCKG 2 cut(s) 2433, 3021
MspCI CTTAAG 1 cut(s) 2654
MspI CCGG 4 cut(s) 30, 66, 88, 2639
MspR9I CCNGG 4 cut(s) 89, 248, 311, 899
MunI CAATTG 1 cut(s) 2848
Mva1269I GAATGC 1 cut(s) 1603
MvaI CCWGG 3 cut(s) 248, 311, 899
MwoI GCNNNNNNNGC 3 cut(s) 2219, 2836, 2920
NciI CCSGG 1 cut(s) 89
NdeI CATATG 2 cut(s) 1735, 2073
NlaIV GGNNCC 2 cut(s) 2371, 2726
NmeAIII GCCGAG 1 cut(s) 2640
NmuCI GTSAC 2 cut(s) 130, 2928
NsbI TGCGCA 2 cut(s) 240, 2840
NsiI ATGCAT 2 cut(s) 1096, 1539
NspI RCATGY 3 cut(s) 1007, 1094, 2309
OliI CACNNNNGTG 1 cut(s) 1159
PagI TCATGA 2 cut(s) 1039, 3038
PciI ACATGT 2 cut(s) 1003, 2305
PctI GAATGC 1 cut(s) 1603
PdmI GAANNNNTTC 1 cut(s) 2179
PfeI GAWTC 5 cut(s) 495, 1234, 2017, 2191, 3026
PflMI CCANNNNNTGG 3 cut(s) 1688, 2358, 2465
PfoI TCCNGGA 1 cut(s) 897
PkrI GCNGC 7 cut(s) 45, 549, 2435, 2613, 2775, 2826, 2829
PleI GAGTC 4 cut(s) 1206, 2390, 2625, 2860
PpsI GAGTC 4 cut(s) 1206, 2390, 2625, 2860
Ppu21I YACGTR 1 cut(s) 2497
PpuMI RGGWCCY 1 cut(s) 244
PscI ACATGT 2 cut(s) 1003, 2305
PshAI GACNNNNGTC 1 cut(s) 2676
PsiI TTATAA 1 cut(s) 354
Psp5II RGGWCCY 1 cut(s) 244
Psp6I CCWGG 3 cut(s) 246, 309, 897
PspEI GGTNACC 1 cut(s) 1868
PspGI CCWGG 3 cut(s) 246, 309, 897
PspN4I GGNNCC 2 cut(s) 2371, 2726
PspPI GGNCC 1 cut(s) 244
PspPPI RGGWCCY 1 cut(s) 244
PstNI CAGNNNCTG 2 cut(s) 247, 2436
PsuI RGATCY 2 cut(s) 1261, 2242
PvuII CAGCTG 1 cut(s) 3021
RsaI GTAC 4 cut(s) 156, 1022, 2310, 2751
RsaNI GTAC 4 cut(s) 155, 1021, 2309, 2750
RseI CAYNNNNRTG 3 cut(s) 1159, 1608, 1804
SatI GCNGC 7 cut(s) 44, 548, 2434, 2612, 2774, 2825, 2828
Sau96I GGNCC 1 cut(s) 244
ScaI AGTACT 1 cut(s) 156
SchI GAGTC 4 cut(s) 1207, 2390, 2626, 2860
ScrFI CCNGG 4 cut(s) 89, 248, 311, 899
SduI GDGCHC 1 cut(s) 1120
SexAI ACCWGGT 1 cut(s) 246
SfcI CTRYAG 3 cut(s) 480, 582, 2437
SinI GGWCC 1 cut(s) 244
SmiMI CAYNNNNRTG 3 cut(s) 1159, 1608, 1804
SmlI CTYRAG 1 cut(s) 2654
SmoI CTYRAG 1 cut(s) 2654
SnaBI TACGTA 1 cut(s) 2497
SsiI CCGC 5 cut(s) 518, 606, 2433, 2811, 2828
SspI AATATT 1 cut(s) 1657
SspMI CTAG 7 cut(s) 1113, 1193, 1205, 1217, 1572, 1781, 2576
StyD4I CCNGG 4 cut(s) 87, 246, 309, 897
StyI CCWWGG 4 cut(s) 424, 1204, 2718, 2728
TaaI ACNGT 5 cut(s) 72, 702, 1018, 1169, 1482
TaiI ACGT 4 cut(s) 1712, 2499, 2513, 2930
TaqI TCGA 7 cut(s) 35, 159, 234, 790, 856, 2740, 2762
TatI WGTACW 4 cut(s) 154, 1020, 2308, 2749
TauI GCSGC 2 cut(s) 2436, 2830
TfiI GAWTC 5 cut(s) 495, 1234, 2017, 2191, 3026
TscAI CASTG 4 cut(s) 751, 1725, 2460, 2527
TseFI GTSAC 2 cut(s) 130, 2928
TseI GCWGC 5 cut(s) 43, 547, 2611, 2773, 2824
Tsp45I GTSAC 2 cut(s) 130, 2928
TspGWI ACGGA 1 cut(s) 2924
TspRI CASTG 4 cut(s) 751, 1725, 2460, 2527
Van91I CCANNNNNTGG 3 cut(s) 1688, 2358, 2465
Vha464I CTTAAG 1 cut(s) 2654
VneI GTGCAC 1 cut(s) 1116
VpaK11BI GGWCC 1 cut(s) 244
XagI CCTNNNNNAGG 1 cut(s) 508
XapI RAATTY 9 cut(s) 775, 786, 841, 852, 1673, 1858, 2178, 2335, 2960
XbaI TCTAGA 2 cut(s) 1571, 1780
XceI RCATGY 3 cut(s) 1007, 1094, 2309
XmaJI CCTAGG 1 cut(s) 1204
XmiI GTMKAC 2 cut(s) 940, 1000
XmnI GAANNNNTTC 1 cut(s) 2179
XspI CTAG 7 cut(s) 1113, 1193, 1205, 1217, 1572, 1781, 2576
ZraI GACGTC 2 cut(s) 2511, 2928
ZrmI AGTACT 1 cut(s) 156
Zsp2I ATGCAT 2 cut(s) 1096, 1539
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.