RchiOBHm_Chr1g0346461

disease resistance

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
38889181 .. 38889660
480 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57273

Sequence Viewer

Length: 429 bp
ATGCCAATGTCTGAGCAAGATAGCTGGTCATTATTTAAAAATCATGCCTTCAAAAATGCAGCTGTTGGTGCACACTCACATCTTGAAGAAATCGGTAGACAAATTGTTCAAAAGTGCAATGGTCTTCCTTTGGCTATTAAATCCCTTGGGGGTCTCTTATGTTCTAAATTGTTAGTGGACGAATGGGAAAGTATATTGAACAGTGACATGTGGGAGTTCTCGCCGGATGAGAGTGACATTCTGCCTTCTCTTTGGTTGAGCTATATGAATCTGCCTTCGCATCTCAAGCGTTGTTTTGGACATTGTTCGATATTTTCCAAGAACTATAAGTTCAGAACATCAGAATTGGTTTACTTGTGGAAGGCTGAAGATCTCTTGCAACCTAAAAAAAACAAAACAGCAAGAAATCGGACAAGACTACTTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

142

Amino Acids

16.4

Weight (kDa)

8.69

Isoelectric Point (pI)

52.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WHD_DRP PF23559 104 - 134 8.6e-06 Disease resistance protein Winged helix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000035)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G14470 AT3G14470
fragaria_vesca FvH4_1g01220 FvH4_1g01230 FvH4_3g24551 FvH4_3g24552 FvH4_4g29310 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_6g39860 FvH4_6g39861 FvH4_7g11380
malus_domestica MD00G1072900.v1.1 MD00G1073100.v1.1 MD00G1120600.v1.1 MD00G1120900.v1.1 MD00G1121000.v1.1 MD00G1121200.v1.1 MD00G1152300.v1.1 MD00G1203600.v1.1 MD00G1203700.v1.1 MD02G1250900.v1.1 MD02G1251900.v1.1 MD02G1252800.v1.1 MD02G1277100.v1.1 MD02G1277200.v1.1 MD02G1277400.v1.1 MD02G1286100.v1.1 MD02G1286200.v1.1 MD02G1286900.v1.1 MD03G1006200.v1.1 MD03G1015300.v1.1 MD03G1015500.v1.1 MD03G1015900.v1.1 MD03G1016000.v1.1 MD03G1024900.v1.1 MD03G1025000.v1.1 MD03G1025500.v1.1 MD03G1026000.v1.1 MD03G1026500.v1.1 MD03G1031800.v1.1 MD03G1072200.v1.1 MD07G1028000.v1.1 MD07G1028300.v1.1 MD07G1029400.v1.1 MD07G1029500.v1.1 MD07G1040300.v1.1 MD07G1044500.v1.1 MD07G1045100.v1.1 MD07G1045500.v1.1 MD07G1050700.v1.1 MD07G1050900.v1.1 MD07G1055800.v1.1 MD07G1056200.v1.1 MD07G1056600.v1.1 MD07G1057100.v1.1 MD07G1057200.v1.1 MD08G1056500.v1.1 MD08G1056600.v1.1 MD08G1056700.v1.1 MD08G1056800.v1.1 MD08G1128800.v1.1 MD08G1129500.v1.1 MD08G1130000.v1.1 MD11G1066700.v1.1 MD11G1066800.v1.1 MD11G1066900.v1.1 MD11G1067000.v1.1 MD11G1067500.v1.1 MD11G1069800.v1.1 MD11G1070400.v1.1 MD11G1071100.v1.1 MD11G1071200.v1.1 MD11G1077200.v1.1 MD11G1077700.v1.1 MD11G1077900.v1.1 MD11G1078100.v1.1 MD11G1078300.v1.1 MD11G1078500.v1.1 MD11G1135200.v1.1 MD11G1135400.v1.1 MD11G1152900.v1.1 MD11G1153000.v1.1 MD17G1056800.v1.1
prunus_persica Prupe.2G037800_v2.0.a1 Prupe.2G037800_v2.0.a1 Prupe.2G037800_v2.0.a1 Prupe.2G037800_v2.0.a1 Prupe.2G040500_v2.0.a1 Prupe.2G040700_v2.0.a1 Prupe.2G043000_v2.0.a1 Prupe.2G043100_v2.0.a1 Prupe.2G043200_v2.0.a1 Prupe.2G046000_v2.0.a1 Prupe.2G046300_v2.0.a1 Prupe.2G046400_v2.0.a1 Prupe.2G046400_v2.0.a1 Prupe.2G046700_v2.0.a1 Prupe.2G046900_v2.0.a1 Prupe.2G051100_v2.0.a1 Prupe.2G052200_v2.0.a1 Prupe.2G053600_v2.0.a1 Prupe.2G053600_v2.0.a1 Prupe.2G053600_v2.0.a1 Prupe.2G053600_v2.0.a1 Prupe.2G053700_v2.0.a1 Prupe.2G053800_v2.0.a1 Prupe.2G053900_v2.0.a1 Prupe.2G054000_v2.0.a1 Prupe.2G054100_v2.0.a1 Prupe.2G054200_v2.0.a1 Prupe.2G054300_v2.0.a1 Prupe.2G054300_v2.0.a1 Prupe.2G054300_v2.0.a1 Prupe.2G054300_v2.0.a1 Prupe.2G054500_v2.0.a1 Prupe.2G054700_v2.0.a1 Prupe.4G286000_v2.0.a1 Prupe.4G286000_v2.0.a1 Prupe.4G286000_v2.0.a1 Prupe.6G129800_v2.0.a1 Prupe.6G130000_v2.0.a1 Prupe.6G130000_v2.0.a1
pyrus_communis pycom02g23740 pycom02g23750 pycom02g24320 pycom03g00620 pycom03g01280 pycom03g01320 pycom03g01350 pycom03g01360 pycom03g01370 pycom03g01380 pycom03g01390 pycom03g02160 pycom03g02170 pycom03g05850 pycom03g09810 pycom07g02120 pycom07g02790 pycom07g02800 pycom07g03210 pycom07g03660 pycom07g03670 pycom07g04350 pycom08g10780 pycom08g10840 pycom08g10910 pycom11g05650 pycom11g05670 pycom11g05800 pycom11g05880 pycom11g05890 pycom11g05940 pycom11g06490 pycom11g06500 pycom11g06520 pycom11g06560 pycom11g06570 pycom11g11230 pycom11g13650 pycom17g05700
rosa_chinensis RchiOBHm_Chr1g0318341 RchiOBHm_Chr1g0318901 RchiOBHm_Chr1g0318931 RchiOBHm_Chr1g0327301 RchiOBHm_Chr1g0328491 RchiOBHm_Chr1g0336761 RchiOBHm_Chr1g0336831 RchiOBHm_Chr1g0340721 RchiOBHm_Chr1g0342461 RchiOBHm_Chr1g0342471 RchiOBHm_Chr1g0342481 RchiOBHm_Chr1g0346131 RchiOBHm_Chr1g0346191 RchiOBHm_Chr1g0346211 RchiOBHm_Chr1g0346241 RchiOBHm_Chr1g0346261 RchiOBHm_Chr1g0346281 RchiOBHm_Chr1g0346461 RchiOBHm_Chr1g0346471 RchiOBHm_Chr1g0346481 RchiOBHm_Chr1g0346501 RchiOBHm_Chr1g0347691 RchiOBHm_Chr1g0347701 RchiOBHm_Chr1g0347751 RchiOBHm_Chr1g0347791 RchiOBHm_Chr1g0347971 RchiOBHm_Chr1g0349661 RchiOBHm_Chr1g0349741 RchiOBHm_Chr1g0357561 RchiOBHm_Chr3g0492601 RchiOBHm_Chr5g0039181 RchiOBHm_Chr5g0039231 RchiOBHm_Chr5g0039241 RchiOBHm_Chr5g0039251 RchiOBHm_Chr5g0039531 RchiOBHm_Chr5g0044001 RchiOBHm_Chr5g0044571 RchiOBHm_Chr5g0044611 RchiOBHm_Chr5g0044631 RchiOBHm_Chr5g0044641 RchiOBHm_Chr5g0044651 RchiOBHm_Chr5g0044661 RchiOBHm_Chr5g0044681 RchiOBHm_Chr5g0045221 RchiOBHm_Chr5g0045901 RchiOBHm_Chr5g0045991 RchiOBHm_Chr5g0046001 RchiOBHm_Chr5g0046011
rosa_laevigata RLG00000028715 RLG00000028718 RLG00000029034 RLG00000029926 RLG00000030516 RLG00000034285 RLG00000034288
rosa_multiflora Rmu_co7987576.1_g000001 Rmu_co8028038.1_g000001 Rmu_co8104858.1_g000001 Rmu_co8185828.1_g000001 Rmu_co8227651.1_g000001 Rmu_co8235061.1_g000001 Rmu_co8246845.1_g000001 Rmu_co8254315.1_g000001 Rmu_co8284899.1_g000001 Rmu_co8401461.1_g000001 Rmu_co8475625.1_g000001 Rmu_co8502681.1_g000001 Rmu_sc0000250.1_g000005 Rmu_sc0000492.1_g000001 Rmu_sc0000533.1_g000004 Rmu_sc0000795.1_g000114 Rmu_sc0000831.1_g000039 Rmu_sc0000907.1_g000014 Rmu_sc0000907.1_g000034 Rmu_sc0001035.1_g000007 Rmu_sc0001035.1_g000011 Rmu_sc0001035.1_g000012 Rmu_sc0001099.1_g000003 Rmu_sc0001157.1_g000008 Rmu_sc0001212.1_g000016 Rmu_sc0001212.1_g000017 Rmu_sc0001304.1_g000027 Rmu_sc0001304.1_g000033 Rmu_sc0001773.1_g000019 Rmu_sc0001836.1_g000069 Rmu_sc0001856.1_g000004 Rmu_sc0002286.1_g000003 Rmu_sc0002286.1_g000004 Rmu_sc0002286.1_g000005 Rmu_sc0002286.1_g000007 Rmu_sc0002286.1_g000015 Rmu_sc0002495.1_g000025 Rmu_sc0002545.1_g000008 Rmu_sc0002545.1_g000009 Rmu_sc0002662.1_g000009 Rmu_sc0003363.1_g000019 Rmu_sc0003363.1_g000022 Rmu_sc0003600.1_g000057 Rmu_sc0003809.1_g000036 Rmu_sc0003809.1_g000037 Rmu_sc0005008.1_g000026 Rmu_sc0005008.1_g000028 Rmu_sc0005028.1_g000001 Rmu_sc0005144.1_g000022 Rmu_sc0005167.1_g000004 Rmu_sc0005626.1_g000005 Rmu_sc0005626.1_g000018 Rmu_sc0006228.1_g000011 Rmu_sc0006609.1_g000007 Rmu_sc0006609.1_g000009 Rmu_sc0006609.1_g000015 Rmu_sc0006609.1_g000016 Rmu_sc0006609.1_g000017 Rmu_sc0006609.1_g000018 Rmu_sc0007060.1_g000003 Rmu_sc0007318.1_g000011 Rmu_sc0007992.1_g000002 Rmu_sc0009172.1_g000001 Rmu_sc0010151.1_g000010 Rmu_sc0010151.1_g000011 Rmu_sc0011778.1_g000001 Rmu_sc0011778.1_g000005 Rmu_sc0011778.1_g000009 Rmu_sc0012293.1_g000001 Rmu_sc0012293.1_g000002 Rmu_sc0016606.1_g000001 Rmu_sc0016836.1_g000001 Rmu_sc0021084.1_g000008 Rmu_sc0021449.1_g000001 Rmu_sc0026523.1_g000001 Rmu_sc0027133.1_g000003 Rmu_sc0038674.1_g000001 Rmu_ssc0000255.1_g000053 Rmu_ssc0000255.1_g000063 Rmu_ssc0000255.1_g000064 Rmu_ssc0000263.1_g000004 Rmu_ssc0000400.1_g000027
rosa_roxburghii Rroxscaffold_1G00035290 Rroxscaffold_1G00036350 Rroxscaffold_1G00036360 Rroxscaffold_1G00036400 Rroxscaffold_1G00036460 Rroxscaffold_1G00037000 Rroxscaffold_1G00040440 Rroxscaffold_1G00041890 Rroxscaffold_1G00041920 Rroxscaffold_4G00307460 Rroxscaffold_4G00307500 Rroxscaffold_4G00308500 Rroxscaffold_4G00308510 Rroxscaffold_4G00308770 Rroxscaffold_4G00313020 Rroxscaffold_4G00321580 Rroxscaffold_4G00323030 Rroxscaffold_4G00326850 Rroxscaffold_4G00328770 Rroxscaffold_4G00328780 Rroxscaffold_4G00329310 Rroxscaffold_5G00352110
rosa_rugosa Rorug01G0020700 Rorug01G0023000 Rorug01G0023100 Rorug01G0023200 Rorug01G0023300 Rorug01G0023400 Rorug01G0024500 Rorug01G0025100 Rorug01G0025200 Rorug01G0025400 Rorug01G0025400 Rorug01G0064700 Rorug01G0065300 Rorug01G0127600 Rorug01G0128000 Rorug01G0148000.1 Rorug01G0150500.1 Rorug01G0161600.1 Rorug01G0161800.1 Rorug01G0163600.1 Rorug01G0178300 Rorug01G0178500 Rorug01G0178700 Rorug01G0179900 Rorug01G0180200 Rorug01G0180300 Rorug01G0180400 Rorug01G0189000 Rorug01G0189100 Rorug01G0190500 Rorug01G0204800 Rorug05G0177200 Rorug05G0210300 Rorug05G0210300 Rorug05G0210300 Rorug05G0215400 Rorug05G0215400 Rorug05G0215400 Rorug05G0215400 Rorug05G0215500 Rorug05G0215600 Rorug05G0215800 Rorug05G0215900 Rorug05G0215900 Rorug05G0216000 Rorug05G0216200 Rorug05G0216300 Rorug05G0221900 Rorug07G0276700
rosa_samantha Rh1BG028400 Rh1BG033500 Rh1BG065100 Rh1BG073100 Rh1BG073200 Rh1BG117000 Rh1BG164000 Rh1BG164200 Rh1BG172100 Rh1BG173900 Rh1BG174100 Rh1BG188400 Rh1CG036000 Rh1CG036500 Rh1CG089900 Rh1CG140200 Rh1CG164700 Rh1CG182600 Rh1CG182900 Rh1CG183400 Rh1CG191300 Rh1CG192000 Rh1CG207700 Rh1DG033800 Rh1DG033900 Rh1DG096000 Rh5AG299900 Rh5AG304500 Rh5AG307100 Rh5AG307500 Rh5CG301600 Rh5CG329800 Rh5CG333800 Rh5DG311400 Rh5DG316300 Rh5DG316400 Rh5DG316700 Rh5DG316800 Rh5DG316900 Rh5DG326100 Rh7AG431900 Rh7CG451000
rosa_wichuraiana Rw0G007840 Rw0G009850 Rw0G013000 Rw0G015090 Rw0G021190 Rw1G002610 Rw1G004320 Rw1G006520 Rw1G007250 Rw1G012020 Rw1G013830 Rw1G014770 Rw1G016300 Rw1G016600 Rw1G016650 Rw1G017290 Rw1G017420 Rw1G017630 Rw1G017650 Rw1G017660 Rw1G017690 Rw1G017700 Rw1G018960 Rw5G024660 Rw5G024700 Rw5G024720 Rw5G024740 Rw5G024980 Rw5G027710 Rw5G027720 Rw5G027730 Rw5G027740 Rw5G027750 Rw5G028130 Rw5G028740 Rw5G028750 Rw5G028790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 97
AcuI CTGAAG 1 cut(s) 387
AflIII ACRYGT 1 cut(s) 207
AgsI TTSAA 5 cut(s) 52, 86, 110, 199, 425
AluBI AGCT 3 cut(s) 24, 62, 261
AluI AGCT 3 cut(s) 24, 62, 261
Alw21I GWGCWC 1 cut(s) 73
Alw26I GTCTC 1 cut(s) 158
Alw44I GTGCAC 1 cut(s) 69
ApaLI GTGCAC 1 cut(s) 69
ApeKI GCWGC 1 cut(s) 59
BaeGI GKGCMC 1 cut(s) 73
BbsI GAAGAC 1 cut(s) 116
Bbv12I GWGCWC 1 cut(s) 73
BbvI GCAGC 1 cut(s) 71
BcoDI GTCTC 1 cut(s) 158
BglII AGATCT 1 cut(s) 370
BisI GCNGC 1 cut(s) 60
BlsI GCNGC 1 cut(s) 61
BmsI GCATC 1 cut(s) 289
BpiI GAAGAC 1 cut(s) 116
BpuEI CTTGAG 1 cut(s) 269
BsaI GGTCTC 1 cut(s) 158
BsaJI CCNNGG 1 cut(s) 145
Bse3DI GCAATG 1 cut(s) 124
BseDI CCNNGG 1 cut(s) 145
BseGI GGATG 1 cut(s) 232
BseMI GCAATG 1 cut(s) 124
BseSI GKGCMC 1 cut(s) 73
BseXI GCAGC 1 cut(s) 71
BsiHKAI GWGCWC 1 cut(s) 73
BsiSI CCGG 1 cut(s) 224
BsmAI GTCTC 1 cut(s) 158
Bso31I GGTCTC 1 cut(s) 158
Bsp1286I GDGCHC 1 cut(s) 73
Bsp143I GATC 1 cut(s) 370
BspCNI CTCAG 1 cut(s) 4
BspTNI GGTCTC 1 cut(s) 158
BsrDI GCAATG 1 cut(s) 124
BssECI CCNNGG 1 cut(s) 145
BssMI GATC 1 cut(s) 370
BssT1I CCWWGG 1 cut(s) 145
Bst4CI ACNGT 1 cut(s) 203
BstDEI CTNAG 1 cut(s) 12
BstF5I GGATG 1 cut(s) 232
BstKTI GATC 1 cut(s) 373
BstMAI GTCTC 1 cut(s) 158
BstMBI GATC 1 cut(s) 370
BstMWI GCNNNNNNNGC 2 cut(s) 68, 286
BstNSI RCATGY 1 cut(s) 211
BstSLI GKGCMC 1 cut(s) 73
BstV1I GCAGC 1 cut(s) 71
BstV2I GAAGAC 1 cut(s) 116
BstX2I RGATCY 1 cut(s) 370
BstYI RGATCY 1 cut(s) 370
BtsCI GGATG 1 cut(s) 232
BtsIMutI CAGTG 1 cut(s) 208
CviAII CATG 2 cut(s) 44, 208
CviJI RGCY 5 cut(s) 24, 62, 134, 261, 365
CviKI_1 RGCY 5 cut(s) 24, 62, 134, 261, 365
DdeI CTNAG 1 cut(s) 12
DpnI GATC 1 cut(s) 372
DpnII GATC 1 cut(s) 370
DraI TTTAAA 1 cut(s) 37
Eco130I CCWWGG 1 cut(s) 145
Eco31I GGTCTC 1 cut(s) 158
Eco57I CTGAAG 1 cut(s) 387
EcoT14I CCWWGG 1 cut(s) 145
ErhI CCWWGG 1 cut(s) 145
FaeI CATG 2 cut(s) 47, 211
FaiI YATR 7 cut(s) 45, 160, 194, 209, 264, 266, 327
FatI CATG 2 cut(s) 43, 207
FblI GTMKAC 1 cut(s) 97
Fnu4HI GCNGC 1 cut(s) 60
FokI GGATG 1 cut(s) 239
Fsp4HI GCNGC 1 cut(s) 60
GluI GCNGC 1 cut(s) 60
HapII CCGG 1 cut(s) 224
Hin1II CATG 2 cut(s) 47, 211
HinfI GANTC 1 cut(s) 268
HpaII CCGG 1 cut(s) 224
Hpy166II GTNNAC 4 cut(s) 71, 98, 178, 352
Hpy188I TCNGA 4 cut(s) 13, 335, 343, 411
Hpy188III TCNNGA 1 cut(s) 83
Hpy8I GTNNAC 4 cut(s) 71, 98, 178, 352
HpyAV CCTTC 4 cut(s) 58, 255, 285, 355
HpyCH4III ACNGT 1 cut(s) 203
HpyCH4V TGCA 4 cut(s) 59, 71, 117, 379
HpyF10VI GCNNNNNNNGC 2 cut(s) 68, 286
HpyF3I CTNAG 1 cut(s) 12
Hsp92II CATG 2 cut(s) 47, 211
Kzo9I GATC 1 cut(s) 370
LpnPI CCDG 2 cut(s) 10, 237
Lsp1109I GCAGC 1 cut(s) 71
LweI GCATC 1 cut(s) 289
MaeIII GTNAC 2 cut(s) 203, 233
MalI GATC 1 cut(s) 372
MboI GATC 1 cut(s) 370
MboII GAAGA 3 cut(s) 98, 116, 380
MflI RGATCY 1 cut(s) 370
MhlI GDGCHC 1 cut(s) 73
MluCI AATT 3 cut(s) 102, 167, 344
MseI TTAA 2 cut(s) 36, 138
MspA1I CMGCKG 1 cut(s) 62
MspI CCGG 1 cut(s) 224
MwoI GCNNNNNNNGC 2 cut(s) 68, 286
NdeII GATC 1 cut(s) 370
NlaIII CATG 2 cut(s) 47, 211
NmuCI GTSAC 2 cut(s) 203, 233
NspI RCATGY 1 cut(s) 211
PciI ACATGT 1 cut(s) 207
PfeI GAWTC 1 cut(s) 268
PkrI GCNGC 1 cut(s) 61
PscI ACATGT 1 cut(s) 207
PsuI RGATCY 1 cut(s) 370
PvuII CAGCTG 1 cut(s) 62
SaqAI TTAA 2 cut(s) 36, 138
SatI GCNGC 1 cut(s) 60
Sau3AI GATC 1 cut(s) 370
SduI GDGCHC 1 cut(s) 73
SetI ASST 4 cut(s) 26, 64, 263, 385
SfaNI GCATC 1 cut(s) 289
SmlI CTYRAG 1 cut(s) 284
SmoI CTYRAG 1 cut(s) 284
Sse9I AATT 3 cut(s) 102, 167, 344
StyI CCWWGG 1 cut(s) 145
TaaI ACNGT 1 cut(s) 203
TaqI TCGA 1 cut(s) 308
TasI AATT 3 cut(s) 102, 167, 344
TfiI GAWTC 1 cut(s) 268
Tru1I TTAA 2 cut(s) 36, 138
Tru9I TTAA 2 cut(s) 36, 138
TscAI CASTG 1 cut(s) 208
TseFI GTSAC 2 cut(s) 203, 233
TseI GCWGC 1 cut(s) 59
Tsp45I GTSAC 2 cut(s) 203, 233
TspDTI ATGAA 1 cut(s) 281
TspRI CASTG 1 cut(s) 208
VneI GTGCAC 1 cut(s) 69
XceI RCATGY 1 cut(s) 211
XmiI GTMKAC 1 cut(s) 97
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.