disease resistance
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Rx_N | PF18052 | 35 - 102 | 1.7e-16 | Rx N-terminal domain |
| NB-ARC | PF00931 | 176 - 347 | 3.9e-39 | NB-ARC domain |
| WHD_DRP | PF23559 | 430 - 498 | 2.7e-25 | Disease resistance protein Winged helix domain |
| LRR_14 | PF23598 | 578 - 841 | 1.6e-23 | Leucine-rich repeat region |
| LRR_R13L1-DRL21 | PF25019 | 690 - 812 | 1.2e-30 | R13L1/DRL21 LRRs |
| LRR_14 | PF23598 | 931 - 1209 | 1.4e-06 | Leucine-rich repeat region |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 354, 3107 |
| Acc36I | ACCTGC | 1 cut(s) | 2413 |
| AccB1I | GGYRCC | 1 cut(s) | 2138 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2393 |
| AccI | GTMKAC | 5 cut(s) | 874, 934, 2008, 2786, 2962 |
| AccII | CGCG | 1 cut(s) | 1423 |
| AccIII | TCCGGA | 1 cut(s) | 65 |
| AciI | CCGC | 6 cut(s) | 152, 606, 2125, 2852, 2940, 3303 |
| AclI | AACGTT | 1 cut(s) | 3313 |
| AclWI | GGATC | 8 cut(s) | 876, 1190, 1458, 1536, 1689, 1939, 3042, 3489 |
| AcoI | YGGCCR | 1 cut(s) | 3006 |
| AcuI | CTGAAG | 5 cut(s) | 146, 288, 2177, 2792, 3008 |
| AcyI | GRCGYC | 1 cut(s) | 3344 |
| AfaI | GTAC | 5 cut(s) | 502, 1642, 1867, 2238, 2468 |
| AflII | CTTAAG | 2 cut(s) | 1138, 2582 |
| AflIII | ACRYGT | 1 cut(s) | 937 |
| AjiI | CACGTC | 1 cut(s) | 938 |
| AleI | CACNNNNGTG | 1 cut(s) | 1093 |
| AloI | GAACNNNNNNTCC | 6 cut(s) | 2661, 2693, 2702, 2734, 3498, 3530 |
| Alw21I | GWGCWC | 7 cut(s) | 159, 219, 957, 1054, 2421, 2865, 3591 |
| Alw44I | GTGCAC | 3 cut(s) | 953, 1050, 2861 |
| AlwI | GGATC | 8 cut(s) | 876, 1190, 1458, 1536, 1689, 1939, 3042, 3489 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 3031, 3048, 3124 |
| Ama87I | CYCGRG | 1 cut(s) | 2761 |
| Aor13HI | TCCGGA | 1 cut(s) | 65 |
| AoxI | GGCC | 4 cut(s) | 726, 3006, 3182, 3413 |
| ApaLI | GTGCAC | 3 cut(s) | 953, 1050, 2861 |
| ApeKI | GCWGC | 3 cut(s) | 547, 1115, 2797 |
| AseI | ATTAAT | 1 cut(s) | 1821 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2107 |
| AspLEI | GCGC | 1 cut(s) | 1815 |
| AspS9I | GGNCC | 3 cut(s) | 727, 3182, 3283 |
| AsuC2I | CCSGG | 4 cut(s) | 89, 1047, 2762, 2763 |
| AsuHPI | GGTGA | 7 cut(s) | 55, 142, 1406, 1769, 2281, 2570, 3292 |
| AvaI | CYCGRG | 1 cut(s) | 2761 |
| AvaII | GGWCC | 1 cut(s) | 3283 |
| BaeGI | GKGCMC | 3 cut(s) | 957, 1054, 2865 |
| BalI | TGGCCA | 1 cut(s) | 3008 |
| BanI | GGYRCC | 1 cut(s) | 2138 |
| BanII | GRGCYC | 2 cut(s) | 219, 2421 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1207, 1239 |
| BauI | CACGAG | 1 cut(s) | 2994 |
| BbsI | GAAGAC | 2 cut(s) | 103, 2870 |
| Bbv12I | GWGCWC | 7 cut(s) | 159, 219, 957, 1054, 2421, 2865, 3591 |
| BbvCI | CCTCAGC | 1 cut(s) | 2591 |
| BbvI | GCAGC | 3 cut(s) | 534, 1102, 2784 |
| BccI | CCATC | 8 cut(s) | 509, 956, 1519, 1671, 2354, 2998, 3168, 3797 |
| BceAI | ACGGC | 3 cut(s) | 179, 1851, 2785 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 41, 75, 1933, 1967 |
| BcnI | CCSGG | 4 cut(s) | 89, 1047, 2762, 2763 |
| BfaI | CTAG | 5 cut(s) | 1112, 1127, 1151, 1506, 2504 |
| BfmI | CTRYAG | 3 cut(s) | 582, 591, 1926 |
| BfrI | CTTAAG | 2 cut(s) | 1138, 2582 |
| BfuAI | ACCTGC | 1 cut(s) | 2413 |
| BisI | GCNGC | 4 cut(s) | 548, 1116, 2798, 2852 |
| BlsI | GCNGC | 4 cut(s) | 549, 1117, 2799, 2853 |
| Bme1390I | CCNGG | 4 cut(s) | 89, 1047, 2762, 2763 |
| Bme18I | GGWCC | 1 cut(s) | 3283 |
| BmeT110I | CYCGRG | 1 cut(s) | 2761 |
| BmgBI | CACGTC | 1 cut(s) | 938 |
| BmgT120I | GGNCC | 3 cut(s) | 727, 3182, 3283 |
| BmiI | GGNNCC | 2 cut(s) | 2140, 2299 |
| BmrFI | CCNGG | 4 cut(s) | 89, 1047, 2762, 2763 |
| BmrI | ACTGGG | 1 cut(s) | 2067 |
| BmuI | ACTGGG | 1 cut(s) | 2067 |
| BpiI | GAAGAC | 2 cut(s) | 103, 2870 |
| BpmI | CTGGAG | 2 cut(s) | 2801, 3509 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2591 |
| BpuEI | CTTGAG | 1 cut(s) | 3605 |
| BpuMI | CCSGG | 4 cut(s) | 89, 1047, 2762, 2763 |
| Bsa29I | ATCGAT | 2 cut(s) | 261, 1943 |
| BsaAI | YACGTR | 3 cut(s) | 891, 1091, 2425 |
| BsaBI | GATNNNNATC | 1 cut(s) | 3150 |
| BsaHI | GRCGYC | 1 cut(s) | 3344 |
| BsaI | GGTCTC | 2 cut(s) | 1139, 2771 |
| BsaJI | CCNNGG | 7 cut(s) | 240, 424, 1045, 2098, 2761, 2801, 3072 |
| BsaWI | WCCGGW | 2 cut(s) | 29, 65 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 922, 952, 2579, 2609, 2702, 2732, 3498, 3528 |
| Bse1I | ACTGG | 6 cut(s) | 1020, 1652, 2062, 2301, 2390, 2784 |
| Bse3DI | GCAATG | 2 cut(s) | 1386, 2381 |
| Bse8I | GATNNNNATC | 1 cut(s) | 3150 |
| BseAI | TCCGGA | 1 cut(s) | 65 |
| BseCI | ATCGAT | 2 cut(s) | 261, 1943 |
| BseDI | CCNNGG | 7 cut(s) | 240, 424, 1045, 2098, 2761, 2801, 3072 |
| BseJI | GATNNNNATC | 1 cut(s) | 3150 |
| BseMI | GCAATG | 2 cut(s) | 1386, 2381 |
| BseMII | CTCAG | 9 cut(s) | 323, 2188, 2582, 2606, 3050, 3169, 3401, 3483, 3671 |
| BseNI | ACTGG | 6 cut(s) | 1020, 1652, 2062, 2301, 2390, 2784 |
| BseRI | GAGGAG | 5 cut(s) | 185, 450, 1400, 3150, 3153 |
| BseSI | GKGCMC | 3 cut(s) | 957, 1054, 2865 |
| BseXI | GCAGC | 3 cut(s) | 534, 1102, 2784 |
| Bsh1236I | CGCG | 1 cut(s) | 1423 |
| BshFI | GGCC | 4 cut(s) | 728, 3008, 3184, 3415 |
| BshNI | GGYRCC | 1 cut(s) | 2138 |
| BshVI | ATCGAT | 2 cut(s) | 261, 1943 |
| BsiHKAI | GWGCWC | 7 cut(s) | 159, 219, 957, 1054, 2421, 2865, 3591 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2761 |
| BsiSI | CCGG | 7 cut(s) | 30, 66, 88, 1047, 2762, 3281, 3662 |
| BslFI | GGGAC | 4 cut(s) | 332, 572, 2851, 3594 |
| BsmBI | CGTCTC | 3 cut(s) | 2360, 2786, 3485 |
| BsmFI | GGGAC | 4 cut(s) | 332, 572, 2851, 3594 |
| BsmI | GAATGC | 3 cut(s) | 682, 1028, 3294 |
| BsnI | GGCC | 4 cut(s) | 728, 3008, 3184, 3415 |
| Bso31I | GGTCTC | 2 cut(s) | 1139, 2771 |
| BsoBI | CYCGRG | 1 cut(s) | 2761 |
| Bsp1286I | GDGCHC | 7 cut(s) | 159, 219, 957, 1054, 2421, 2865, 3591 |
| Bsp13I | TCCGGA | 1 cut(s) | 65 |
| Bsp68I | TCGCGA | 1 cut(s) | 1423 |
| BspACI | CCGC | 6 cut(s) | 152, 606, 2125, 2852, 2940, 3303 |
| BspANI | GGCC | 4 cut(s) | 728, 3008, 3184, 3415 |
| BspCNI | CTCAG | 9 cut(s) | 322, 2187, 2583, 2607, 3051, 3168, 3402, 3482, 3672 |
| BspDI | ATCGAT | 2 cut(s) | 261, 1943 |
| BspEI | TCCGGA | 1 cut(s) | 65 |
| BspFNI | CGCG | 1 cut(s) | 1423 |
| BspLI | GGNNCC | 2 cut(s) | 2140, 2299 |
| BspMAI | CTGCAG | 1 cut(s) | 1930 |
| BspMI | ACCTGC | 1 cut(s) | 2413 |
| BspPI | GGATC | 8 cut(s) | 876, 1190, 1458, 1536, 1689, 1939, 3042, 3489 |
| BspT107I | GGYRCC | 1 cut(s) | 2138 |
| BspTI | CTTAAG | 2 cut(s) | 1138, 2582 |
| BspTNI | GGTCTC | 2 cut(s) | 1139, 2771 |
| BsrDI | GCAATG | 2 cut(s) | 1386, 2381 |
| BsrI | ACTGG | 6 cut(s) | 1020, 1652, 2062, 2301, 2390, 2784 |
| BssECI | CCNNGG | 7 cut(s) | 240, 424, 1045, 2098, 2761, 2801, 3072 |
| BssNAI | GTATAC | 1 cut(s) | 2963 |
| BssNI | GRCGYC | 1 cut(s) | 3344 |
| BssSI | CACGAG | 1 cut(s) | 2994 |
| BssT1I | CCWWGG | 2 cut(s) | 2098, 3072 |
| Bst1107I | GTATAC | 1 cut(s) | 2963 |
| Bst2BI | CACGAG | 1 cut(s) | 2994 |
| Bst4CI | ACNGT | 7 cut(s) | 72, 702, 1103, 1416, 1861, 3401, 3510 |
| Bst6I | CTCTTC | 3 cut(s) | 3456, 3531, 3606 |
| BstACI | GRCGYC | 1 cut(s) | 3344 |
| BstAFI | CTTAAG | 2 cut(s) | 1138, 2582 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2860 |
| BstBAI | YACGTR | 3 cut(s) | 891, 1091, 2425 |
| BstC8I | GCNNGC | 3 cut(s) | 1725, 1926, 2940 |
| BstDSI | CCRYGG | 1 cut(s) | 2801 |
| BstEII | GGTNACC | 1 cut(s) | 1796 |
| BstENI | CCTNNNNNAGG | 3 cut(s) | 508, 734, 3213 |
| BstFNI | CGCG | 1 cut(s) | 1423 |
| BstHHI | GCGC | 1 cut(s) | 1815 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 214, 2147, 2803, 2812, 2860, 3350 |
| BstNSI | RCATGY | 3 cut(s) | 227, 1028, 1208 |
| BstPI | GGTNACC | 1 cut(s) | 1796 |
| BstSCI | CCNGG | 4 cut(s) | 87, 1045, 2760, 2761 |
| BstSFI | CTRYAG | 3 cut(s) | 582, 591, 1926 |
| BstSLI | GKGCMC | 3 cut(s) | 957, 1054, 2865 |
| BstSNI | TACGTA | 1 cut(s) | 2425 |
| BstUI | CGCG | 1 cut(s) | 1423 |
| BstV1I | GCAGC | 3 cut(s) | 534, 1102, 2784 |
| BstV2I | GAAGAC | 2 cut(s) | 103, 2870 |
| BstX2I | RGATCY | 2 cut(s) | 3034, 3481 |
| BstYI | RGATCY | 2 cut(s) | 3034, 3481 |
| BstZ17I | GTATAC | 1 cut(s) | 2963 |
| Bsu15I | ATCGAT | 2 cut(s) | 261, 1943 |
| BsuRI | GGCC | 4 cut(s) | 728, 3008, 3184, 3415 |
| BsuTUI | ATCGAT | 2 cut(s) | 261, 1943 |
| BtgI | CCRYGG | 1 cut(s) | 2801 |
| BtrI | CACGTC | 1 cut(s) | 938 |
| BtsI | GCAGTG | 1 cut(s) | 2968 |
| BtsIMutI | CAGTG | 5 cut(s) | 1659, 1866, 2027, 2182, 2968 |
| BtuMI | TCGCGA | 1 cut(s) | 1423 |
| BveI | ACCTGC | 1 cut(s) | 2413 |
| Cac8I | GCNNGC | 3 cut(s) | 1725, 1926, 2940 |
| CaiI | CAGNNNCTG | 3 cut(s) | 3031, 3048, 3124 |
| CfoI | GCGC | 1 cut(s) | 1815 |
| Cfr13I | GGNCC | 3 cut(s) | 727, 3182, 3283 |
| Cfr9I | CCCGGG | 1 cut(s) | 2761 |
| ClaI | ATCGAT | 2 cut(s) | 261, 1943 |
| CpoI | CGGWCCG | 1 cut(s) | 3283 |
| CseI | GACGC | 5 cut(s) | 266, 1943, 2342, 2803, 3333 |
| Csp6I | GTAC | 5 cut(s) | 501, 1641, 1866, 2237, 2467 |
| CspI | CGGWCCG | 1 cut(s) | 3283 |
| CviQI | GTAC | 5 cut(s) | 501, 1641, 1866, 2237, 2467 |
| EaeI | YGGCCR | 1 cut(s) | 3006 |
| Eam1104I | CTCTTC | 3 cut(s) | 3456, 3531, 3606 |
| EarI | CTCTTC | 3 cut(s) | 3456, 3531, 3606 |
| Ecl136II | GAGCTC | 2 cut(s) | 217, 2419 |
| Eco105I | TACGTA | 1 cut(s) | 2425 |
| Eco130I | CCWWGG | 2 cut(s) | 2098, 3072 |
| Eco147I | AGGCCT | 1 cut(s) | 3415 |
| Eco24I | GRGCYC | 2 cut(s) | 219, 2421 |
| Eco31I | GGTCTC | 2 cut(s) | 1139, 2771 |
| Eco47I | GGWCC | 1 cut(s) | 3283 |
| Eco53kI | GAGCTC | 2 cut(s) | 217, 2419 |
| Eco57I | CTGAAG | 5 cut(s) | 146, 288, 2177, 2792, 3008 |
| Eco88I | CYCGRG | 1 cut(s) | 2761 |
| Eco91I | GGTNACC | 1 cut(s) | 1796 |
| EcoICRI | GAGCTC | 2 cut(s) | 217, 2419 |
| EcoNI | CCTNNNNNAGG | 3 cut(s) | 508, 734, 3213 |
| EcoO109I | RGGNCCY | 1 cut(s) | 727 |
| EcoO65I | GGTNACC | 1 cut(s) | 1796 |
| EcoRI | GAATTC | 2 cut(s) | 879, 2984 |
| EcoT14I | CCWWGG | 2 cut(s) | 2098, 3072 |
| EcoT22I | ATGCAT | 2 cut(s) | 1030, 1473 |
| EcoT38I | GRGCYC | 2 cut(s) | 219, 2421 |
| ErhI | CCWWGG | 2 cut(s) | 2098, 3072 |
| Esp3I | CGTCTC | 3 cut(s) | 2360, 2786, 3485 |
| FaqI | GGGAC | 4 cut(s) | 332, 572, 2851, 3594 |
| FauI | CCCGC | 2 cut(s) | 599, 2947 |
| FblI | GTMKAC | 5 cut(s) | 874, 934, 2008, 2786, 2962 |
| Fnu4HI | GCNGC | 4 cut(s) | 548, 1116, 2798, 2852 |
| FriOI | GRGCYC | 2 cut(s) | 219, 2421 |
| Fsp4HI | GCNGC | 4 cut(s) | 548, 1116, 2798, 2852 |
| FspBI | CTAG | 5 cut(s) | 1112, 1127, 1151, 1506, 2504 |
| GlaI | GCGC | 1 cut(s) | 1814 |
| GluI | GCNGC | 4 cut(s) | 548, 1116, 2798, 2852 |
| GsuI | CTGGAG | 2 cut(s) | 2801, 3509 |
| HaeIII | GGCC | 4 cut(s) | 728, 3008, 3184, 3415 |
| HapII | CCGG | 7 cut(s) | 30, 66, 88, 1047, 2762, 3281, 3662 |
| HgaI | GACGC | 5 cut(s) | 266, 1943, 2342, 2803, 3333 |
| HhaI | GCGC | 1 cut(s) | 1815 |
| Hin1I | GRCGYC | 1 cut(s) | 3344 |
| Hin6I | GCGC | 1 cut(s) | 1813 |
| HinP1I | GCGC | 1 cut(s) | 1813 |
| HincII | GTYRAC | 2 cut(s) | 187, 2787 |
| HindII | GTYRAC | 2 cut(s) | 187, 2787 |
| HindIII | AAGCTT | 1 cut(s) | 270 |
| HpaII | CCGG | 7 cut(s) | 30, 66, 88, 1047, 2762, 3281, 3662 |
| HphI | GGTGA | 7 cut(s) | 55, 142, 1406, 1769, 2281, 2570, 3292 |
| Hpy99I | CGWCG | 4 cut(s) | 200, 282, 2730, 2791 |
| HpyCH4III | ACNGT | 7 cut(s) | 72, 702, 1103, 1416, 1861, 3401, 3510 |
| HpyCH4IV | ACGT | 8 cut(s) | 134, 890, 937, 1090, 2424, 2951, 3313, 3494 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 214, 2147, 2803, 2812, 2860, 3350 |
| HpySE526I | ACGT | 8 cut(s) | 134, 890, 937, 1090, 2424, 2951, 3313, 3494 |
| Hsp92I | GRCGYC | 1 cut(s) | 3344 |
| HspAI | GCGC | 1 cut(s) | 1813 |
| Kpn2I | TCCGGA | 1 cut(s) | 65 |
| LmnI | GCTCC | 6 cut(s) | 896, 2587, 3045, 3140, 3519, 3720 |
| Lsp1109I | GCAGC | 3 cut(s) | 534, 1102, 2784 |
| MaeI | CTAG | 5 cut(s) | 1112, 1127, 1151, 1506, 2504 |
| MaeII | ACGT | 8 cut(s) | 134, 890, 937, 1090, 2424, 2951, 3313, 3494 |
| MfeI | CAATTG | 2 cut(s) | 803, 2872 |
| MflI | RGATCY | 2 cut(s) | 3034, 3481 |
| MhlI | GDGCHC | 7 cut(s) | 159, 219, 957, 1054, 2421, 2865, 3591 |
| MlsI | TGGCCA | 1 cut(s) | 3008 |
| MluNI | TGGCCA | 1 cut(s) | 3008 |
| MlyI | GAGTC | 7 cut(s) | 93, 2239, 2318, 2711, 2792, 2884, 3640 |
| MmeI | TCCRAC | 4 cut(s) | 375, 1277, 2361, 3112 |
| Mox20I | TGGCCA | 1 cut(s) | 3008 |
| Mph1103I | ATGCAT | 2 cut(s) | 1030, 1473 |
| MroI | TCCGGA | 1 cut(s) | 65 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2107 |
| MscI | TGGCCA | 1 cut(s) | 3008 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1093, 1732 |
| Msp20I | TGGCCA | 1 cut(s) | 3008 |
| MspCI | CTTAAG | 2 cut(s) | 1138, 2582 |
| MspI | CCGG | 7 cut(s) | 30, 66, 88, 1047, 2762, 3281, 3662 |
| MspR9I | CCNGG | 4 cut(s) | 89, 1047, 2762, 2763 |
| MunI | CAATTG | 2 cut(s) | 803, 2872 |
| Mva1269I | GAATGC | 3 cut(s) | 682, 1028, 3294 |
| MvnI | CGCG | 1 cut(s) | 1423 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 214, 2147, 2803, 2812, 2860, 3350 |
| NciI | CCSGG | 4 cut(s) | 89, 1047, 2762, 2763 |
| NlaIV | GGNNCC | 2 cut(s) | 2140, 2299 |
| NmeAIII | GCCGAG | 1 cut(s) | 265 |
| NmuCI | GTSAC | 6 cut(s) | 130, 758, 1565, 2952, 3391, 3784 |
| NruI | TCGCGA | 1 cut(s) | 1423 |
| NsiI | ATGCAT | 2 cut(s) | 1030, 1473 |
| NspI | RCATGY | 3 cut(s) | 227, 1028, 1208 |
| OliI | CACNNNNGTG | 1 cut(s) | 1093 |
| PceI | AGGCCT | 1 cut(s) | 3415 |
| PctI | GAATGC | 3 cut(s) | 682, 1028, 3294 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2107 |
| PfeI | GAWTC | 7 cut(s) | 775, 1168, 1787, 2216, 3053, 3121, 3556 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2393 |
| PkrI | GCNGC | 4 cut(s) | 549, 1117, 2799, 2853 |
| PleI | GAGTC | 7 cut(s) | 93, 2238, 2318, 2711, 2791, 2884, 3639 |
| PpsI | GAGTC | 7 cut(s) | 93, 2238, 2318, 2711, 2791, 2884, 3639 |
| Ppu21I | YACGTR | 3 cut(s) | 891, 1091, 2425 |
| PshBI | ATTAAT | 1 cut(s) | 1821 |
| PsiI | TTATAA | 2 cut(s) | 354, 3107 |
| Psp124BI | GAGCTC | 2 cut(s) | 219, 2421 |
| Psp1406I | AACGTT | 1 cut(s) | 3313 |
| PspEI | GGTNACC | 1 cut(s) | 1796 |
| PspN4I | GGNNCC | 2 cut(s) | 2140, 2299 |
| PspPI | GGNCC | 3 cut(s) | 727, 3182, 3283 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 2362, 2394 |
| PstI | CTGCAG | 1 cut(s) | 1930 |
| PstNI | CAGNNNCTG | 3 cut(s) | 3031, 3048, 3124 |
| PsuI | RGATCY | 2 cut(s) | 3034, 3481 |
| RruI | TCGCGA | 1 cut(s) | 1423 |
| RsaI | GTAC | 5 cut(s) | 502, 1642, 1867, 2238, 2468 |
| RsaNI | GTAC | 5 cut(s) | 501, 1641, 1866, 2237, 2467 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1093, 1732 |
| Rsr2I | CGGWCCG | 1 cut(s) | 3283 |
| RsrII | CGGWCCG | 1 cut(s) | 3283 |
| SacI | GAGCTC | 2 cut(s) | 219, 2421 |
| SalI | GTCGAC | 1 cut(s) | 2785 |
| SatI | GCNGC | 4 cut(s) | 548, 1116, 2798, 2852 |
| Sau96I | GGNCC | 3 cut(s) | 727, 3182, 3283 |
| SchI | GAGTC | 7 cut(s) | 93, 2239, 2318, 2711, 2792, 2884, 3640 |
| ScrFI | CCNGG | 4 cut(s) | 89, 1047, 2762, 2763 |
| SduI | GDGCHC | 7 cut(s) | 159, 219, 957, 1054, 2421, 2865, 3591 |
| SfcI | CTRYAG | 3 cut(s) | 582, 591, 1926 |
| SinI | GGWCC | 1 cut(s) | 3283 |
| SmaI | CCCGGG | 1 cut(s) | 2763 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1093, 1732 |
| SmlI | CTYRAG | 3 cut(s) | 1138, 2582, 3584 |
| SmoI | CTYRAG | 3 cut(s) | 1138, 2582, 3584 |
| SnaBI | TACGTA | 1 cut(s) | 2425 |
| SseBI | AGGCCT | 1 cut(s) | 3415 |
| SsiI | CCGC | 6 cut(s) | 152, 606, 2125, 2852, 2940, 3303 |
| SspI | AATATT | 1 cut(s) | 380 |
| SspMI | CTAG | 5 cut(s) | 1112, 1127, 1151, 1506, 2504 |
| SstI | GAGCTC | 2 cut(s) | 219, 2421 |
| StuI | AGGCCT | 1 cut(s) | 3415 |
| StyD4I | CCNGG | 4 cut(s) | 87, 1045, 2760, 2761 |
| StyI | CCWWGG | 2 cut(s) | 2098, 3072 |
| TaaI | ACNGT | 7 cut(s) | 72, 702, 1103, 1416, 1861, 3401, 3510 |
| TaiI | ACGT | 8 cut(s) | 137, 893, 940, 1093, 2427, 2954, 3316, 3497 |
| TaqII | GACCGA | 2 cut(s) | 416, 3300 |
| TatI | WGTACW | 2 cut(s) | 1865, 2236 |
| TauI | GCSGC | 1 cut(s) | 2854 |
| TfiI | GAWTC | 7 cut(s) | 775, 1168, 1787, 2216, 3053, 3121, 3556 |
| TscAI | CASTG | 5 cut(s) | 1659, 1866, 2034, 2182, 2975 |
| TseFI | GTSAC | 6 cut(s) | 130, 758, 1565, 2952, 3391, 3784 |
| TseI | GCWGC | 3 cut(s) | 547, 1115, 2797 |
| Tsp45I | GTSAC | 6 cut(s) | 130, 758, 1565, 2952, 3391, 3784 |
| TspGWI | ACGGA | 7 cut(s) | 507, 2209, 2729, 2804, 2948, 3228, 3588 |
| TspMI | CCCGGG | 1 cut(s) | 2761 |
| TspRI | CASTG | 5 cut(s) | 1659, 1866, 2034, 2182, 2975 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2393 |
| Vha464I | CTTAAG | 2 cut(s) | 1138, 2582 |
| VneI | GTGCAC | 3 cut(s) | 953, 1050, 2861 |
| VpaK11BI | GGWCC | 1 cut(s) | 3283 |
| VspI | ATTAAT | 1 cut(s) | 1821 |
| XagI | CCTNNNNNAGG | 3 cut(s) | 508, 734, 3213 |
| XbaI | TCTAGA | 1 cut(s) | 1505 |
| XceI | RCATGY | 3 cut(s) | 227, 1028, 1208 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1674 |
| XmaI | CCCGGG | 1 cut(s) | 2761 |
| XmiI | GTMKAC | 5 cut(s) | 874, 934, 2008, 2786, 2962 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2107 |
| XspI | CTAG | 5 cut(s) | 1112, 1127, 1151, 1506, 2504 |
| Zsp2I | ATGCAT | 2 cut(s) | 1030, 1473 |