RchiOBHm_Chr1g0346261

disease resistance

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
38414652 .. 38417516
2865 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57253

Sequence Viewer

Length: 2298 bp
ATGGCTCAGCACAAGGACTCCCCTTCTACATATACTACTACTTCTGGACCTCCTTATGACGTGTTCCTCAGCTTCAGAGGTGCAGACACCCGAAAGAACTTCACTGATCACCTGTACACGGCCCTTCTCAACGCCCCATTTGTAACTTTCCGGGATGACCAACTCGAGAGAGGGGAGAATATCTGGGAAGAACTAAAGAAAGCAATTCATCGGTCGCGAAGTTCTGTGATTGTGTTTTCGAGAGATTATACCTCTTCCGATTCGTGTCTGGACGAGCTTGTTGTGATCCTTGAACGCAAGAAGAACTCCAATCATGTCGTGTTCCCGGTCTACTATGATATTGGTCCTTCTGAACTGGGCAAGGAGGCAGAAAGTCTTTCAAAGATCCGTAAATGCCATGAATATCAATCACCTCAGAAGTTGAAGGGATGGCGGGAAGCACTTAAGGAAGTGGTAGATCTAGCAGGAAATGTTTTAAAAAATGAAGCTGACGGGCACGAGTCAAAGTTCATCCAAAAGATTGTTACAGTGATTCAAGACAAGCTAGGTCGTGTGCCCCTGACCCATGTCCAGGAGGAGTTACAGAAGAAGTTGTTGGAAATTAAGCGTTACCTCGATGACGCCGAGGGAAAGCAACTGAACAACCGAAATGTGAAGGCATGGTTCAATCACTTCAATGAGCTTAAAGGAGCTGTCTATGATACCGAGGACCTATTGCAGGAGATCAAGACAGAAGCATTAAGACGAAAGATGGAGCCTGAATCTGGAAGTAGCACGAGTAAGGTACAAGACGTCAACTCCAGTCTTCCATCTCATGCTTTTGACTCAACATTAATTTACCCCAGGGTAAAGGAAGCTCGTAATAGACTAGATTCCATTATGAAGAGAAAAGATGACTTGGGTTTGGAAGCAAGTGCTGGATACAGCGTATCGCAAACACTACAGTCAACTTCTTTGGTCGAAGACTCTGGTGTGTGTGGCAGAGATGACGAGAAGGAGACACTTATTAAACTGTTGCTATCAGATGATGAGAAAAGCAATAAGATAAGTGTGATTCCCATTGTGGGTATGGGTGGGATCGGAAAGACCACCCTTGCCCAGCTTTTGTACAACGATGATAGAGTTGAACAACATTTTGACAAAAAAGCATGGGCTTGTGTTTCTGAAAAATTTGATGTTCTTCGGATCTCACAACAAATTTATGAGTCCCTTACTTTAAAGGCCTGCGACGTTCAGTACTTAGGTCCACTTCAGTCAAAATTGGAGGCGGAATTGAAGGGGAAAAACGTTTTCTTTGTTCTTGATGACGTGTGGAATAAGATTTATACTGAATGGGAGGTCTTAAAGCTTCCTTTTAAATCTGTAGCACCTGGAAGTAAGATTATTGTCACAACACGCAATCAAGATGTTGCAAATATGGTGCGTACTCTTGAAGCTCGCTGTCTCGGGCCAATGCCCGAGGAAGATAGCTGGTCATTATTTGAAAAACATGCCTTCAAAAATATAGGTGATGATCCACGCTCACATCTTGAAAAAATAGGTAAACAAATTGTACGAAAGTGCAATGGTCTTCCTTTGGCTATTAAGTCCCTTGCGGGTCTGTTATGTTCTAAATTAGATGTGGAGGAATGGGAAAGTATATTGCACAGTGAGATGTGGGAGTTGCCAGAGGAGGAGAGCAACATTTTGCCATCTCTTTGGTTGAGCTTTAAGCATCTGCCTCCACATCTCAGGCGTTGTTTTGTGTATTGCTCGATATTTCCCAAGAACTATGAGTTCAAAACATCAGAATTGGTTTACTTGTGGATGGCTGAAGATCTATTGCAACCCACAAGAAACAAAACAGCAGAAAAAGTCGGACAAGGCTACTTCAATGATCTAATCTCAAGATCATTTTTTCAACTTTCATCAACATCTGATGAATATTTCATCATGCATGACCTTATCAATGATTTAGCAAGCTTTGTATCAGGAGAATTTTGTTTTAGGTGGGAGGGCAGTGATTCACCCAACAATTTGAGCAAGACTCGTCACTTTTCATGTATGGCGGAATATCTTACTGCAGAGGCTGATAGCCTAGAGATGTTTGAGGCTTTACAGCAAGCTAAATGTTTGCGCACCTTTCTAAAATTAGATCCATATTCGTGGAGAAGTCTCTACGAGGCATTGCCAAAGTTTCAATGTTTAAGAACGCTCAAGTTAAATGCATGCGATATTGAGAAATTGCCTGAGTCAATTAACAACTTGAAACATCTTAAGCACTTGGACTTGTCTGACAGTGCCGGCGAAAGACTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

765

Amino Acids

87.63

Weight (kDa)

5.86

Isoelectric Point (pI)

49.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 19 - 188 2.9e-37 TIR domain
TIR_2 PF13676 21 - 116 2.7e-13 TIR domain
Rx_N PF18052 170 - 256 3.9e-12 Rx N-terminal domain
NB-ARC PF00931 329 - 501 1.8e-35 NB-ARC domain
WHD_DRP PF23559 586 - 653 1.4e-25 Disease resistance protein Winged helix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000035)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G14470 AT3G14470
fragaria_vesca FvH4_1g01220 FvH4_1g01230 FvH4_3g24551 FvH4_3g24552 FvH4_4g29310 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_6g39860 FvH4_6g39861 FvH4_7g11380
malus_domestica MD00G1072900.v1.1 MD00G1073100.v1.1 MD00G1120600.v1.1 MD00G1120900.v1.1 MD00G1121000.v1.1 MD00G1121200.v1.1 MD00G1152300.v1.1 MD00G1203600.v1.1 MD00G1203700.v1.1 MD02G1250900.v1.1 MD02G1251900.v1.1 MD02G1252800.v1.1 MD02G1277100.v1.1 MD02G1277200.v1.1 MD02G1277400.v1.1 MD02G1286100.v1.1 MD02G1286200.v1.1 MD02G1286900.v1.1 MD03G1006200.v1.1 MD03G1015300.v1.1 MD03G1015500.v1.1 MD03G1015900.v1.1 MD03G1016000.v1.1 MD03G1024900.v1.1 MD03G1025000.v1.1 MD03G1025500.v1.1 MD03G1026000.v1.1 MD03G1026500.v1.1 MD03G1031800.v1.1 MD03G1072200.v1.1 MD07G1028000.v1.1 MD07G1028300.v1.1 MD07G1029400.v1.1 MD07G1029500.v1.1 MD07G1040300.v1.1 MD07G1044500.v1.1 MD07G1045100.v1.1 MD07G1045500.v1.1 MD07G1050700.v1.1 MD07G1050900.v1.1 MD07G1055800.v1.1 MD07G1056200.v1.1 MD07G1056600.v1.1 MD07G1057100.v1.1 MD07G1057200.v1.1 MD08G1056500.v1.1 MD08G1056600.v1.1 MD08G1056700.v1.1 MD08G1056800.v1.1 MD08G1128800.v1.1 MD08G1129500.v1.1 MD08G1130000.v1.1 MD11G1066700.v1.1 MD11G1066800.v1.1 MD11G1066900.v1.1 MD11G1067000.v1.1 MD11G1067500.v1.1 MD11G1069800.v1.1 MD11G1070400.v1.1 MD11G1071100.v1.1 MD11G1071200.v1.1 MD11G1077200.v1.1 MD11G1077700.v1.1 MD11G1077900.v1.1 MD11G1078100.v1.1 MD11G1078300.v1.1 MD11G1078500.v1.1 MD11G1135200.v1.1 MD11G1135400.v1.1 MD11G1152900.v1.1 MD11G1153000.v1.1 MD17G1056800.v1.1
prunus_persica Prupe.2G037800_v2.0.a1 Prupe.2G037800_v2.0.a1 Prupe.2G037800_v2.0.a1 Prupe.2G037800_v2.0.a1 Prupe.2G040500_v2.0.a1 Prupe.2G040700_v2.0.a1 Prupe.2G043000_v2.0.a1 Prupe.2G043100_v2.0.a1 Prupe.2G043200_v2.0.a1 Prupe.2G046000_v2.0.a1 Prupe.2G046300_v2.0.a1 Prupe.2G046400_v2.0.a1 Prupe.2G046400_v2.0.a1 Prupe.2G046700_v2.0.a1 Prupe.2G046900_v2.0.a1 Prupe.2G051100_v2.0.a1 Prupe.2G052200_v2.0.a1 Prupe.2G053600_v2.0.a1 Prupe.2G053600_v2.0.a1 Prupe.2G053600_v2.0.a1 Prupe.2G053600_v2.0.a1 Prupe.2G053700_v2.0.a1 Prupe.2G053800_v2.0.a1 Prupe.2G053900_v2.0.a1 Prupe.2G054000_v2.0.a1 Prupe.2G054100_v2.0.a1 Prupe.2G054200_v2.0.a1 Prupe.2G054300_v2.0.a1 Prupe.2G054300_v2.0.a1 Prupe.2G054300_v2.0.a1 Prupe.2G054300_v2.0.a1 Prupe.2G054500_v2.0.a1 Prupe.2G054700_v2.0.a1 Prupe.4G286000_v2.0.a1 Prupe.4G286000_v2.0.a1 Prupe.4G286000_v2.0.a1 Prupe.6G129800_v2.0.a1 Prupe.6G130000_v2.0.a1 Prupe.6G130000_v2.0.a1
pyrus_communis pycom02g23740 pycom02g23750 pycom02g24320 pycom03g00620 pycom03g01280 pycom03g01320 pycom03g01350 pycom03g01360 pycom03g01370 pycom03g01380 pycom03g01390 pycom03g02160 pycom03g02170 pycom03g05850 pycom03g09810 pycom07g02120 pycom07g02790 pycom07g02800 pycom07g03210 pycom07g03660 pycom07g03670 pycom07g04350 pycom08g10780 pycom08g10840 pycom08g10910 pycom11g05650 pycom11g05670 pycom11g05800 pycom11g05880 pycom11g05890 pycom11g05940 pycom11g06490 pycom11g06500 pycom11g06520 pycom11g06560 pycom11g06570 pycom11g11230 pycom11g13650 pycom17g05700
rosa_chinensis RchiOBHm_Chr1g0318341 RchiOBHm_Chr1g0318901 RchiOBHm_Chr1g0318931 RchiOBHm_Chr1g0327301 RchiOBHm_Chr1g0328491 RchiOBHm_Chr1g0336761 RchiOBHm_Chr1g0336831 RchiOBHm_Chr1g0340721 RchiOBHm_Chr1g0342461 RchiOBHm_Chr1g0342471 RchiOBHm_Chr1g0342481 RchiOBHm_Chr1g0346131 RchiOBHm_Chr1g0346191 RchiOBHm_Chr1g0346211 RchiOBHm_Chr1g0346241 RchiOBHm_Chr1g0346261 RchiOBHm_Chr1g0346281 RchiOBHm_Chr1g0346461 RchiOBHm_Chr1g0346471 RchiOBHm_Chr1g0346481 RchiOBHm_Chr1g0346501 RchiOBHm_Chr1g0347691 RchiOBHm_Chr1g0347701 RchiOBHm_Chr1g0347751 RchiOBHm_Chr1g0347791 RchiOBHm_Chr1g0347971 RchiOBHm_Chr1g0349661 RchiOBHm_Chr1g0349741 RchiOBHm_Chr1g0357561 RchiOBHm_Chr3g0492601 RchiOBHm_Chr5g0039181 RchiOBHm_Chr5g0039231 RchiOBHm_Chr5g0039241 RchiOBHm_Chr5g0039251 RchiOBHm_Chr5g0039531 RchiOBHm_Chr5g0044001 RchiOBHm_Chr5g0044571 RchiOBHm_Chr5g0044611 RchiOBHm_Chr5g0044631 RchiOBHm_Chr5g0044641 RchiOBHm_Chr5g0044651 RchiOBHm_Chr5g0044661 RchiOBHm_Chr5g0044681 RchiOBHm_Chr5g0045221 RchiOBHm_Chr5g0045901 RchiOBHm_Chr5g0045991 RchiOBHm_Chr5g0046001 RchiOBHm_Chr5g0046011
rosa_laevigata RLG00000028715 RLG00000028718 RLG00000029034 RLG00000029926 RLG00000030516 RLG00000034285 RLG00000034288
rosa_multiflora Rmu_co7987576.1_g000001 Rmu_co8028038.1_g000001 Rmu_co8104858.1_g000001 Rmu_co8185828.1_g000001 Rmu_co8227651.1_g000001 Rmu_co8235061.1_g000001 Rmu_co8246845.1_g000001 Rmu_co8254315.1_g000001 Rmu_co8284899.1_g000001 Rmu_co8401461.1_g000001 Rmu_co8475625.1_g000001 Rmu_co8502681.1_g000001 Rmu_sc0000250.1_g000005 Rmu_sc0000492.1_g000001 Rmu_sc0000533.1_g000004 Rmu_sc0000795.1_g000114 Rmu_sc0000831.1_g000039 Rmu_sc0000907.1_g000014 Rmu_sc0000907.1_g000034 Rmu_sc0001035.1_g000007 Rmu_sc0001035.1_g000011 Rmu_sc0001035.1_g000012 Rmu_sc0001099.1_g000003 Rmu_sc0001157.1_g000008 Rmu_sc0001212.1_g000016 Rmu_sc0001212.1_g000017 Rmu_sc0001304.1_g000027 Rmu_sc0001304.1_g000033 Rmu_sc0001773.1_g000019 Rmu_sc0001836.1_g000069 Rmu_sc0001856.1_g000004 Rmu_sc0002286.1_g000003 Rmu_sc0002286.1_g000004 Rmu_sc0002286.1_g000005 Rmu_sc0002286.1_g000007 Rmu_sc0002286.1_g000015 Rmu_sc0002495.1_g000025 Rmu_sc0002545.1_g000008 Rmu_sc0002545.1_g000009 Rmu_sc0002662.1_g000009 Rmu_sc0003363.1_g000019 Rmu_sc0003363.1_g000022 Rmu_sc0003600.1_g000057 Rmu_sc0003809.1_g000036 Rmu_sc0003809.1_g000037 Rmu_sc0005008.1_g000026 Rmu_sc0005008.1_g000028 Rmu_sc0005028.1_g000001 Rmu_sc0005144.1_g000022 Rmu_sc0005167.1_g000004 Rmu_sc0005626.1_g000005 Rmu_sc0005626.1_g000018 Rmu_sc0006228.1_g000011 Rmu_sc0006609.1_g000007 Rmu_sc0006609.1_g000009 Rmu_sc0006609.1_g000015 Rmu_sc0006609.1_g000016 Rmu_sc0006609.1_g000017 Rmu_sc0006609.1_g000018 Rmu_sc0007060.1_g000003 Rmu_sc0007318.1_g000011 Rmu_sc0007992.1_g000002 Rmu_sc0009172.1_g000001 Rmu_sc0010151.1_g000010 Rmu_sc0010151.1_g000011 Rmu_sc0011778.1_g000001 Rmu_sc0011778.1_g000005 Rmu_sc0011778.1_g000009 Rmu_sc0012293.1_g000001 Rmu_sc0012293.1_g000002 Rmu_sc0016606.1_g000001 Rmu_sc0016836.1_g000001 Rmu_sc0021084.1_g000008 Rmu_sc0021449.1_g000001 Rmu_sc0026523.1_g000001 Rmu_sc0027133.1_g000003 Rmu_sc0038674.1_g000001 Rmu_ssc0000255.1_g000053 Rmu_ssc0000255.1_g000063 Rmu_ssc0000255.1_g000064 Rmu_ssc0000263.1_g000004 Rmu_ssc0000400.1_g000027
rosa_roxburghii Rroxscaffold_1G00035290 Rroxscaffold_1G00036350 Rroxscaffold_1G00036360 Rroxscaffold_1G00036400 Rroxscaffold_1G00036460 Rroxscaffold_1G00037000 Rroxscaffold_1G00040440 Rroxscaffold_1G00041890 Rroxscaffold_1G00041920 Rroxscaffold_4G00307460 Rroxscaffold_4G00307500 Rroxscaffold_4G00308500 Rroxscaffold_4G00308510 Rroxscaffold_4G00308770 Rroxscaffold_4G00313020 Rroxscaffold_4G00321580 Rroxscaffold_4G00323030 Rroxscaffold_4G00326850 Rroxscaffold_4G00328770 Rroxscaffold_4G00328780 Rroxscaffold_4G00329310 Rroxscaffold_5G00352110
rosa_rugosa Rorug01G0020700 Rorug01G0023000 Rorug01G0023100 Rorug01G0023200 Rorug01G0023300 Rorug01G0023400 Rorug01G0024500 Rorug01G0025100 Rorug01G0025200 Rorug01G0025400 Rorug01G0025400 Rorug01G0064700 Rorug01G0065300 Rorug01G0127600 Rorug01G0128000 Rorug01G0148000.1 Rorug01G0150500.1 Rorug01G0161600.1 Rorug01G0161800.1 Rorug01G0163600.1 Rorug01G0178300 Rorug01G0178500 Rorug01G0178700 Rorug01G0179900 Rorug01G0180200 Rorug01G0180300 Rorug01G0180400 Rorug01G0189000 Rorug01G0189100 Rorug01G0190500 Rorug01G0204800 Rorug05G0177200 Rorug05G0210300 Rorug05G0210300 Rorug05G0210300 Rorug05G0215400 Rorug05G0215400 Rorug05G0215400 Rorug05G0215400 Rorug05G0215500 Rorug05G0215600 Rorug05G0215800 Rorug05G0215900 Rorug05G0215900 Rorug05G0216000 Rorug05G0216200 Rorug05G0216300 Rorug05G0221900 Rorug07G0276700
rosa_samantha Rh1BG028400 Rh1BG033500 Rh1BG065100 Rh1BG073100 Rh1BG073200 Rh1BG117000 Rh1BG164000 Rh1BG164200 Rh1BG172100 Rh1BG173900 Rh1BG174100 Rh1BG188400 Rh1CG036000 Rh1CG036500 Rh1CG089900 Rh1CG140200 Rh1CG164700 Rh1CG182600 Rh1CG182900 Rh1CG183400 Rh1CG191300 Rh1CG192000 Rh1CG207700 Rh1DG033800 Rh1DG033900 Rh1DG096000 Rh5AG299900 Rh5AG304500 Rh5AG307100 Rh5AG307500 Rh5CG301600 Rh5CG329800 Rh5CG333800 Rh5DG311400 Rh5DG316300 Rh5DG316400 Rh5DG316700 Rh5DG316800 Rh5DG316900 Rh5DG326100 Rh7AG431900 Rh7CG451000
rosa_wichuraiana Rw0G007840 Rw0G009850 Rw0G013000 Rw0G015090 Rw0G021190 Rw1G002610 Rw1G004320 Rw1G006520 Rw1G007250 Rw1G012020 Rw1G013830 Rw1G014770 Rw1G016300 Rw1G016600 Rw1G016650 Rw1G017290 Rw1G017420 Rw1G017630 Rw1G017650 Rw1G017660 Rw1G017690 Rw1G017700 Rw1G018960 Rw5G024660 Rw5G024700 Rw5G024720 Rw5G024740 Rw5G024980 Rw5G027710 Rw5G027720 Rw5G027730 Rw5G027740 Rw5G027750 Rw5G028130 Rw5G028740 Rw5G028750 Rw5G028790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 795
Acc16I TGCGCA 1 cut(s) 2117
AccI GTMKAC 1 cut(s) 330
AccII CGCG 1 cut(s) 217
AciI CCGC 4 cut(s) 433, 1268, 1595, 2048
AclI AACGTT 1 cut(s) 1287
AclWI GGATC 6 cut(s) 280, 379, 1085, 1193, 1508, 2129
AcsI RAATTY 3 cut(s) 1169, 1197, 1976
AcuI CTGAAG 3 cut(s) 58, 1235, 1833
AcyI GRCGYC 2 cut(s) 621, 792
AfaI GTAC 6 cut(s) 116, 786, 1109, 1238, 1426, 1554
AfiI CCNNNNNNNGG 5 cut(s) 118, 571, 718, 764, 1064
AflII CTTAAG 2 cut(s) 443, 2255
AflIII ACRYGT 2 cut(s) 60, 1308
AjiI CACGTC 2 cut(s) 61, 1309
AjnI CCWGG 3 cut(s) 570, 842, 1369
AjuI GAANNNNNNNTTGG 2 cut(s) 578, 610
Alw26I GTCTC 3 cut(s) 992, 1448, 2159
AlwI GGATC 6 cut(s) 280, 379, 1085, 1193, 1508, 2129
AlwNI CAGNNNCTG 1 cut(s) 2069
Ama87I CYCGRG 3 cut(s) 164, 1445, 1457
AoxI GGCC 3 cut(s) 120, 1221, 1448
ApoI RAATTY 3 cut(s) 1169, 1197, 1976
AseI ATTAAT 1 cut(s) 833
AspLEI GCGC 1 cut(s) 2118
AspS9I GGNCC 6 cut(s) 47, 121, 344, 709, 1244, 1448
AsuC2I CCSGG 2 cut(s) 152, 326
AsuHPI GGTGA 4 cut(s) 101, 402, 1520, 1998
AvaI CYCGRG 3 cut(s) 164, 1445, 1457
AvaII GGWCC 4 cut(s) 47, 344, 709, 1244
BaeGI GKGCMC 2 cut(s) 498, 558
BauI CACGAG 2 cut(s) 497, 775
BbsI GAAGAC 3 cut(s) 797, 969, 1562
BbvCI CCTCAGC 1 cut(s) 68
BccI CCATC 5 cut(s) 423, 745, 817, 1699, 1801
BceAI ACGGC 1 cut(s) 135
BciT130I CCWGG 3 cut(s) 572, 844, 1371
BciVI GTATCC 1 cut(s) 914
BclI TGATCA 1 cut(s) 106
BcnI CCSGG 2 cut(s) 152, 326
BcoDI GTCTC 3 cut(s) 992, 1448, 2159
BfaI CTAG 4 cut(s) 461, 545, 869, 2078
BfmI CTRYAG 3 cut(s) 941, 1362, 2061
BfrI CTTAAG 2 cut(s) 443, 2255
BfuI GTATCC 1 cut(s) 914
BglII AGATCT 2 cut(s) 457, 1816
BlpI GCTNAGC 1 cut(s) 6
BmcAI AGTACT 1 cut(s) 1238
Bme1390I CCNGG 5 cut(s) 152, 326, 572, 844, 1371
Bme18I GGWCC 4 cut(s) 47, 344, 709, 1244
BmeT110I CYCGRG 3 cut(s) 164, 1445, 1457
BmgBI CACGTC 2 cut(s) 61, 1309
BmgT120I GGNCC 6 cut(s) 47, 121, 344, 709, 1244, 1448
BmiI GGNNCC 1 cut(s) 756
BmrFI CCNGG 5 cut(s) 152, 326, 572, 844, 1371
BmrI ACTGGG 1 cut(s) 365
BmsI GCATC 1 cut(s) 1723
BmuI ACTGGG 1 cut(s) 365
BoxI GACNNNNGTC 1 cut(s) 566
BpiI GAAGAC 3 cut(s) 797, 969, 1562
BplI GAGNNNNNCTC 2 cut(s) 2011, 2043
BpmI CTGGAG 1 cut(s) 784
Bpu10I CCTNAGC 1 cut(s) 68
Bpu1102I GCTNAGC 1 cut(s) 6
BpuEI CTTGAG 2 cut(s) 1870, 2180
BpuMI CCSGG 2 cut(s) 152, 326
BsaHI GRCGYC 2 cut(s) 621, 792
BsaJI CCNNGG 5 cut(s) 624, 705, 842, 843, 1458
BsaXI ACNNNNNCTCC 3 cut(s) 32, 782, 812
Bsc4I CCNNNNNNNGG 5 cut(s) 118, 571, 718, 764, 1064
Bse118I RCCGGY 1 cut(s) 2282
Bse1I ACTGG 2 cut(s) 360, 801
Bse3DI GCAATG 2 cut(s) 1570, 2165
BseBI CCWGG 3 cut(s) 572, 844, 1371
BseDI CCNNGG 5 cut(s) 624, 705, 842, 843, 1458
BseGI GGATG 4 cut(s) 160, 434, 510, 1812
BseLI CCNNNNNNNGG 5 cut(s) 118, 571, 718, 764, 1064
BseMI GCAATG 2 cut(s) 1570, 2165
BseMII CTCAG 5 cut(s) 20, 82, 428, 1744, 2220
BseNI ACTGG 2 cut(s) 360, 801
BseRI GAGGAG 3 cut(s) 590, 1685, 1688
BseSI GKGCMC 2 cut(s) 498, 558
BseYI CCCAGC 1 cut(s) 1098
BsgI GTGCAG 1 cut(s) 102
Bsh1236I CGCG 1 cut(s) 217
Bsh1285I CGRYCG 1 cut(s) 215
BshFI GGCC 3 cut(s) 122, 1223, 1450
BsiEI CGRYCG 1 cut(s) 215
BsiHKCI CYCGRG 3 cut(s) 164, 1445, 1457
BsiSI CCGG 3 cut(s) 151, 326, 2283
BslFI GGGAC 2 cut(s) 1192, 1573
BslI CCNNNNNNNGG 5 cut(s) 118, 571, 718, 764, 1064
BsmAI GTCTC 3 cut(s) 992, 1448, 2159
BsmFI GGGAC 2 cut(s) 1192, 1573
BsnI GGCC 3 cut(s) 122, 1223, 1450
BsoBI CYCGRG 3 cut(s) 164, 1445, 1457
Bsp1286I GDGCHC 2 cut(s) 498, 558
Bsp1407I TGTACA 2 cut(s) 114, 1107
Bsp1720I GCTNAGC 1 cut(s) 6
Bsp68I TCGCGA 1 cut(s) 217
BspACI CCGC 4 cut(s) 433, 1268, 1595, 2048
BspANI GGCC 3 cut(s) 122, 1223, 1450
BspCNI CTCAG 5 cut(s) 19, 81, 427, 1743, 2221
BspFNI CGCG 1 cut(s) 217
BspLI GGNNCC 1 cut(s) 756
BspMAI CTGCAG 1 cut(s) 2065
BspPI GGATC 6 cut(s) 280, 379, 1085, 1193, 1508, 2129
BspTI CTTAAG 2 cut(s) 443, 2255
BsrDI GCAATG 2 cut(s) 1570, 2165
BsrFI RCCGGY 1 cut(s) 2282
BsrGI TGTACA 2 cut(s) 114, 1107
BsrI ACTGG 2 cut(s) 360, 801
BssAI RCCGGY 1 cut(s) 2282
BssECI CCNNGG 5 cut(s) 624, 705, 842, 843, 1458
BssNI GRCGYC 2 cut(s) 621, 792
BssSI CACGAG 2 cut(s) 497, 775
Bst2BI CACGAG 2 cut(s) 497, 775
Bst2UI CCWGG 3 cut(s) 572, 844, 1371
Bst4CI ACNGT 6 cut(s) 529, 945, 1014, 1649, 2279, 2295
Bst6I CTCTTC 2 cut(s) 259, 878
BstACI GRCGYC 2 cut(s) 621, 792
BstAFI CTTAAG 2 cut(s) 443, 2255
BstAUI TGTACA 2 cut(s) 114, 1107
BstC8I GCNNGC 6 cut(s) 1225, 1438, 1960, 2103, 2209, 2284
BstDEI CTNAG 6 cut(s) 6, 68, 414, 1240, 1730, 2229
BstENI CCTNNNNNAGG 1 cut(s) 716
BstF5I GGATG 4 cut(s) 160, 434, 510, 1812
BstFNI CGCG 1 cut(s) 217
BstHHI GCGC 1 cut(s) 2118
BstMAI GTCTC 3 cut(s) 992, 1448, 2159
BstMCI CGRYCG 1 cut(s) 215
BstNI CCWGG 3 cut(s) 572, 844, 1371
BstNSI RCATGY 2 cut(s) 1493, 2211
BstPAI GACNNNNGTC 1 cut(s) 566
BstSCI CCNGG 5 cut(s) 150, 324, 570, 842, 1369
BstSFI CTRYAG 3 cut(s) 941, 1362, 2061
BstSLI GKGCMC 2 cut(s) 498, 558
BstUI CGCG 1 cut(s) 217
BstV2I GAAGAC 3 cut(s) 797, 969, 1562
BstX2I RGATCY 5 cut(s) 384, 457, 1185, 1816, 2134
BstXI CCANNNNNNTGG 2 cut(s) 1698, 2145
BstYI RGATCY 5 cut(s) 384, 457, 1185, 1816, 2134
BsuI GTATCC 1 cut(s) 914
BsuRI GGCC 3 cut(s) 122, 1223, 1450
BtrI CACGTC 2 cut(s) 61, 1309
BtsCI GGATG 4 cut(s) 160, 434, 510, 1812
BtsI GCAGTG 1 cut(s) 2005
BtsIMutI CAGTG 5 cut(s) 102, 534, 1654, 2005, 2284
BtuMI TCGCGA 1 cut(s) 217
Cac8I GCNNGC 6 cut(s) 1225, 1438, 1960, 2103, 2209, 2284
CaiI CAGNNNCTG 1 cut(s) 2069
CfoI GCGC 1 cut(s) 2118
Cfr10I RCCGGY 1 cut(s) 2282
Cfr13I GGNCC 6 cut(s) 47, 121, 344, 709, 1244, 1448
CseI GACGC 1 cut(s) 629
Csp6I GTAC 6 cut(s) 115, 785, 1108, 1237, 1425, 1553
CviQI GTAC 6 cut(s) 115, 785, 1108, 1237, 1425, 1553
DdeI CTNAG 6 cut(s) 6, 68, 414, 1240, 1730, 2229
DraI TTTAAA 3 cut(s) 477, 1218, 1357
Eam1104I CTCTTC 2 cut(s) 259, 878
EarI CTCTTC 2 cut(s) 259, 878
EciI GGCGGA 2 cut(s) 1283, 2063
Eco147I AGGCCT 1 cut(s) 1223
Eco47I GGWCC 4 cut(s) 47, 344, 709, 1244
Eco57I CTGAAG 3 cut(s) 58, 1235, 1833
Eco88I CYCGRG 3 cut(s) 164, 1445, 1457
EcoNI CCTNNNNNAGG 1 cut(s) 716
EcoO109I RGGNCCY 1 cut(s) 709
EcoRII CCWGG 3 cut(s) 570, 842, 1369
EcoT22I ATGCAT 2 cut(s) 1938, 2209
FaqI GGGAC 2 cut(s) 1192, 1573
FauI CCCGC 2 cut(s) 426, 1588
FbaI TGATCA 1 cut(s) 106
FblI GTMKAC 1 cut(s) 330
FokI GGATG 4 cut(s) 167, 441, 497, 1819
FspBI CTAG 4 cut(s) 461, 545, 869, 2078
FspI TGCGCA 1 cut(s) 2117
GlaI GCGC 1 cut(s) 2117
GsaI CCCAGC 1 cut(s) 1102
GsuI CTGGAG 1 cut(s) 784
HaeIII GGCC 3 cut(s) 122, 1223, 1450
HapII CCGG 3 cut(s) 151, 326, 2283
HgaI GACGC 1 cut(s) 629
HhaI GCGC 1 cut(s) 2118
Hin1I GRCGYC 2 cut(s) 621, 792
Hin6I GCGC 1 cut(s) 2116
HinP1I GCGC 1 cut(s) 2116
HincII GTYRAC 2 cut(s) 796, 948
HindII GTYRAC 2 cut(s) 796, 948
HindIII AAGCTT 2 cut(s) 1346, 1960
HpaII CCGG 3 cut(s) 151, 326, 2283
HphI GGTGA 4 cut(s) 101, 402, 1520, 1998
Hpy166II GTNNAC 7 cut(s) 117, 331, 796, 948, 1247, 1544, 1798
Hpy8I GTNNAC 7 cut(s) 117, 331, 796, 948, 1247, 1544, 1798
Hpy99I CGWCG 1 cut(s) 1232
HpyAV CCTTC 8 cut(s) 33, 134, 357, 418, 649, 988, 1270, 1504
HpyCH4III ACNGT 6 cut(s) 529, 945, 1014, 1649, 2279, 2295
HpyCH4IV ACGT 5 cut(s) 60, 792, 1230, 1287, 1308
HpyCH4V TGCA 9 cut(s) 83, 718, 1412, 1563, 1645, 1825, 1936, 2063, 2207
HpyF3I CTNAG 6 cut(s) 6, 68, 414, 1240, 1730, 2229
HpySE526I ACGT 5 cut(s) 60, 792, 1230, 1287, 1308
Hsp92I GRCGYC 2 cut(s) 621, 792
HspAI GCGC 1 cut(s) 2116
KroI GCCGGC 1 cut(s) 2282
KroNI GCCGGC 1 cut(s) 2284
Ksp22I TGATCA 1 cut(s) 106
LmnI GCTCC 2 cut(s) 689, 754
LweI GCATC 1 cut(s) 1723
MaeI CTAG 4 cut(s) 461, 545, 869, 2078
MaeII ACGT 5 cut(s) 60, 792, 1230, 1287, 1308
MaeIII GTNAC 6 cut(s) 142, 523, 579, 608, 1387, 2030
MflI RGATCY 5 cut(s) 384, 457, 1185, 1816, 2134
MhlI GDGCHC 2 cut(s) 498, 558
MlyI GAGTC 7 cut(s) 11, 509, 818, 959, 1214, 2020, 2240
MmeI TCCRAC 2 cut(s) 576, 1837
Mph1103I ATGCAT 2 cut(s) 1938, 2209
MroNI GCCGGC 1 cut(s) 2282
MslI CAYNNNNRTG 2 cut(s) 675, 2143
MspCI CTTAAG 2 cut(s) 443, 2255
MspI CCGG 3 cut(s) 151, 326, 2283
MspR9I CCNGG 5 cut(s) 152, 326, 572, 844, 1371
MvaI CCWGG 3 cut(s) 572, 844, 1371
MvnI CGCG 1 cut(s) 217
NaeI GCCGGC 1 cut(s) 2284
NciI CCSGG 2 cut(s) 152, 326
NgoMIV GCCGGC 1 cut(s) 2282
NlaIV GGNNCC 1 cut(s) 756
NmeAIII GCCGAG 1 cut(s) 649
NmuCI GTSAC 2 cut(s) 1387, 2030
NruI TCGCGA 1 cut(s) 217
NsbI TGCGCA 1 cut(s) 2117
NsiI ATGCAT 2 cut(s) 1938, 2209
NspI RCATGY 2 cut(s) 1493, 2211
PaeI GCATGC 1 cut(s) 2211
PaeR7I CTCGAG 1 cut(s) 164
PasI CCCWGGG 1 cut(s) 843
PceI AGGCCT 1 cut(s) 1223
PcsI WCGNNNNNNNCGW 1 cut(s) 621
PdiI GCCGGC 1 cut(s) 2284
PfeI GAWTC 6 cut(s) 260, 532, 761, 872, 1054, 2003
PfoI TCCNGGA 2 cut(s) 150, 570
PleI GAGTC 7 cut(s) 11, 508, 818, 959, 1213, 2020, 2239
PpsI GAGTC 7 cut(s) 11, 508, 818, 959, 1213, 2020, 2239
PpuMI RGGWCCY 1 cut(s) 709
PshAI GACNNNNGTC 1 cut(s) 566
PshBI ATTAAT 1 cut(s) 833
Psp1406I AACGTT 1 cut(s) 1287
Psp5II RGGWCCY 1 cut(s) 709
Psp6I CCWGG 3 cut(s) 570, 842, 1369
PspFI CCCAGC 1 cut(s) 1098
PspGI CCWGG 3 cut(s) 570, 842, 1369
PspN4I GGNNCC 1 cut(s) 756
PspPI GGNCC 6 cut(s) 47, 121, 344, 709, 1244, 1448
PspPPI RGGWCCY 1 cut(s) 709
PstI CTGCAG 1 cut(s) 2065
PstNI CAGNNNCTG 1 cut(s) 2069
PsuI RGATCY 5 cut(s) 384, 457, 1185, 1816, 2134
RruI TCGCGA 1 cut(s) 217
RsaI GTAC 6 cut(s) 116, 786, 1109, 1238, 1426, 1554
RsaNI GTAC 6 cut(s) 115, 785, 1108, 1237, 1425, 1553
RseI CAYNNNNRTG 2 cut(s) 675, 2143
Sau96I GGNCC 6 cut(s) 47, 121, 344, 709, 1244, 1448
ScaI AGTACT 1 cut(s) 1238
SchI GAGTC 7 cut(s) 11, 509, 818, 959, 1214, 2020, 2240
ScrFI CCNGG 5 cut(s) 152, 326, 572, 844, 1371
SduI GDGCHC 2 cut(s) 498, 558
SfaNI GCATC 1 cut(s) 1723
SfcI CTRYAG 3 cut(s) 941, 1362, 2061
Sfr274I CTCGAG 1 cut(s) 164
SinI GGWCC 4 cut(s) 47, 344, 709, 1244
SlaI CTCGAG 1 cut(s) 164
SmiMI CAYNNNNRTG 2 cut(s) 675, 2143
SmlI CTYRAG 5 cut(s) 164, 443, 1885, 2195, 2255
SmoI CTYRAG 5 cut(s) 164, 443, 1885, 2195, 2255
SphI GCATGC 1 cut(s) 2211
SseBI AGGCCT 1 cut(s) 1223
SsiI CCGC 4 cut(s) 433, 1268, 1595, 2048
SspI AATATT 1 cut(s) 1925
SspMI CTAG 4 cut(s) 461, 545, 869, 2078
StuI AGGCCT 1 cut(s) 1223
StyD4I CCNGG 5 cut(s) 150, 324, 570, 842, 1369
TaaI ACNGT 6 cut(s) 529, 945, 1014, 1649, 2279, 2295
TaiI ACGT 5 cut(s) 63, 795, 1233, 1290, 1311
TaqI TCGA 5 cut(s) 165, 239, 615, 960, 1754
TaqII GACCGA 1 cut(s) 201
TatI WGTACW 3 cut(s) 114, 1107, 1236
TfiI GAWTC 6 cut(s) 260, 532, 761, 872, 1054, 2003
TscAI CASTG 5 cut(s) 109, 534, 1654, 2005, 2284
TseFI GTSAC 2 cut(s) 1387, 2030
Tsp45I GTSAC 2 cut(s) 1387, 2030
TspDTI ATGAA 9 cut(s) 197, 414, 498, 499, 896, 1896, 1918, 1935, 2028
TspGWI ACGGA 1 cut(s) 377
TspRI CASTG 5 cut(s) 109, 534, 1654, 2005, 2284
Vha464I CTTAAG 2 cut(s) 443, 2255
VpaK11BI GGWCC 4 cut(s) 47, 344, 709, 1244
VspI ATTAAT 1 cut(s) 833
XagI CCTNNNNNAGG 1 cut(s) 716
XapI RAATTY 3 cut(s) 1169, 1197, 1976
XceI RCATGY 2 cut(s) 1493, 2211
XcmI CCANNNNNNNNNTGG 1 cut(s) 1066
XhoI CTCGAG 1 cut(s) 164
XmiI GTMKAC 1 cut(s) 330
XspI CTAG 4 cut(s) 461, 545, 869, 2078
ZraI GACGTC 1 cut(s) 793
ZrmI AGTACT 1 cut(s) 1238
Zsp2I ATGCAT 2 cut(s) 1938, 2209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.