pycom03g05850

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
Physical Location & Seq
Forward (+)
4616854 .. 4618538
1685 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g05850.1

Sequence Viewer

Length: 1461 bp
ATGGCTTTGGCGGTGGTAGGTGGAGCCGTTCTCTCCGGTTTCTTCCAGCAAGTGTTTGTGAAGTTGGACTCTCAAGAGATCAAGGACTTCATCAGCGGAAAGAAACGGACCGGTGAGTTGCTGAACAAGTTGGAGACGACGTTGATCTATGTTCATGCTGTTTTCGATGACGCCGAGGAGAAGCAAATAAGCAACTTAGCTGTAAGGCAGTGGCTGACTAAGCTCAAAGAGGTAGTCCTTGATGCAGAGGACCTGTTGGACGAGATCAAGACAGAAGCGTTAAGCCGGAAAATGGAAGCTGAGTTCGGAAGTAGCACTAGCACGAACAAGGTACAAGGTCTTATCTCTGCTTCAGTTCGTGCCCTCGACGAGACAACTATAGACTCCAAGATAGAGAAAATTCTTGAGAGGCTAGGCTTCGTGGCAAAACAAAAAGATGCCTTTCATTTGAAAGCAGGTTGCAAGCACAGAATCTCACAAACGCTGCCTTCAACTTCCGTGGTTGAAGGCTCTGATGTGTACGGAAGAGATAAAGACAAGGAAACCATCATTAAGTTGTTGCTATCAAATGATGTTACTGGCAGTAAGATAGGAGTCGTTCCTGTTTTCGGCATGGGTGGGATCGGAAAGACCACCCTTGCTCAGCTCGTTTTCAACGACGATGCAGTGAAGGGGCATTTTAACCTGAGAGCATGGGTTTGTGTTTCTGAGGTATTTGATGTTGTTAAAATAACACAAACACTGTACGGGTCAGTTACTTCACAAAATTGTGATATTACAGACCTCAATATGCTCCAAGTTAAACTCAAGGAGGTTTTGACAAGGAAGAAGTTTCTTTTTGTTCTTGACGATGTTTGGAATGAGAATTACAATGATTGGGATGTTTTAAGGCGTCCATTTGAGTCTGGAGTTCGCGGAAGTAAGATCATTGTCACTACACGCAACAAAGGTGTTGCCTCTATGATGGGTACTCGTCCAACCCACCATCTAATGCAAATGCTTGAGGAAGATTGTTGGTTGGTGTTTGCAAAACATGCATTTGAGAATGAAAGTGGTTTTGTAGATCCAAATCAAGAATTAATTGGGAGACAAATTGTTAGCAAGTGTAAAGGCCTTCCTTTAGCTGCAAAATCGCTTGGGGGCCTCTTGCGCTCTGAATCAAATTTGGAAGAATGGAAAAATATATTACAAAGTGACATATGGGAGTTGTCAGATACGAAGAGTGGCATTCTACCGGCTTTATGGCTAAGCTATCAATACTTGTCTCCACATCTCAAGCGTTGTTTTGGCTATTGTTCGATATTTCCCAAAGATTATAAATTTCGCAAGTCGGAACTAGTTTTGTTGTGGATGGCCGAAGATCTTTTACAGCCCAACAGGATGAAAATGATGGAAGAAGTTGGAGAGAAATACTTTGATGATCTAGTTTCAAGGGTATTCATTGCCCACAGTACGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

487

Amino Acids

54.83

Weight (kDa)

6.36

Isoelectric Point (pI)

36.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 15 - 102 2e-17 Rx N-terminal domain
NB-ARC PF00931 177 - 351 6e-40 NB-ARC domain
WHD_DRP PF23559 434 - 482 4.2e-18 Disease resistance protein Winged helix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000035)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G14470 AT3G14470
fragaria_vesca FvH4_1g01220 FvH4_1g01230 FvH4_3g24551 FvH4_3g24552 FvH4_4g29310 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_6g39860 FvH4_6g39861 FvH4_7g11380
malus_domestica MD00G1072900.v1.1 MD00G1073100.v1.1 MD00G1120600.v1.1 MD00G1120900.v1.1 MD00G1121000.v1.1 MD00G1121200.v1.1 MD00G1152300.v1.1 MD00G1203600.v1.1 MD00G1203700.v1.1 MD02G1250900.v1.1 MD02G1251900.v1.1 MD02G1252800.v1.1 MD02G1277100.v1.1 MD02G1277200.v1.1 MD02G1277400.v1.1 MD02G1286100.v1.1 MD02G1286200.v1.1 MD02G1286900.v1.1 MD03G1006200.v1.1 MD03G1015300.v1.1 MD03G1015500.v1.1 MD03G1015900.v1.1 MD03G1016000.v1.1 MD03G1024900.v1.1 MD03G1025000.v1.1 MD03G1025500.v1.1 MD03G1026000.v1.1 MD03G1026500.v1.1 MD03G1031800.v1.1 MD03G1072200.v1.1 MD07G1028000.v1.1 MD07G1028300.v1.1 MD07G1029400.v1.1 MD07G1029500.v1.1 MD07G1040300.v1.1 MD07G1044500.v1.1 MD07G1045100.v1.1 MD07G1045500.v1.1 MD07G1050700.v1.1 MD07G1050900.v1.1 MD07G1055800.v1.1 MD07G1056200.v1.1 MD07G1056600.v1.1 MD07G1057100.v1.1 MD07G1057200.v1.1 MD08G1056500.v1.1 MD08G1056600.v1.1 MD08G1056700.v1.1 MD08G1056800.v1.1 MD08G1128800.v1.1 MD08G1129500.v1.1 MD08G1130000.v1.1 MD11G1066700.v1.1 MD11G1066800.v1.1 MD11G1066900.v1.1 MD11G1067000.v1.1 MD11G1067500.v1.1 MD11G1069800.v1.1 MD11G1070400.v1.1 MD11G1071100.v1.1 MD11G1071200.v1.1 MD11G1077200.v1.1 MD11G1077700.v1.1 MD11G1077900.v1.1 MD11G1078100.v1.1 MD11G1078300.v1.1 MD11G1078500.v1.1 MD11G1135200.v1.1 MD11G1135400.v1.1 MD11G1152900.v1.1 MD11G1153000.v1.1 MD17G1056800.v1.1
prunus_persica Prupe.2G037800_v2.0.a1 Prupe.2G037800_v2.0.a1 Prupe.2G037800_v2.0.a1 Prupe.2G037800_v2.0.a1 Prupe.2G040500_v2.0.a1 Prupe.2G040700_v2.0.a1 Prupe.2G043000_v2.0.a1 Prupe.2G043100_v2.0.a1 Prupe.2G043200_v2.0.a1 Prupe.2G046000_v2.0.a1 Prupe.2G046300_v2.0.a1 Prupe.2G046400_v2.0.a1 Prupe.2G046400_v2.0.a1 Prupe.2G046700_v2.0.a1 Prupe.2G046900_v2.0.a1 Prupe.2G051100_v2.0.a1 Prupe.2G052200_v2.0.a1 Prupe.2G053600_v2.0.a1 Prupe.2G053600_v2.0.a1 Prupe.2G053600_v2.0.a1 Prupe.2G053600_v2.0.a1 Prupe.2G053700_v2.0.a1 Prupe.2G053800_v2.0.a1 Prupe.2G053900_v2.0.a1 Prupe.2G054000_v2.0.a1 Prupe.2G054100_v2.0.a1 Prupe.2G054200_v2.0.a1 Prupe.2G054300_v2.0.a1 Prupe.2G054300_v2.0.a1 Prupe.2G054300_v2.0.a1 Prupe.2G054300_v2.0.a1 Prupe.2G054500_v2.0.a1 Prupe.2G054700_v2.0.a1 Prupe.4G286000_v2.0.a1 Prupe.4G286000_v2.0.a1 Prupe.4G286000_v2.0.a1 Prupe.6G129800_v2.0.a1 Prupe.6G130000_v2.0.a1 Prupe.6G130000_v2.0.a1
pyrus_communis pycom02g23740 pycom02g23750 pycom02g24320 pycom03g00620 pycom03g01280 pycom03g01320 pycom03g01350 pycom03g01360 pycom03g01370 pycom03g01380 pycom03g01390 pycom03g02160 pycom03g02170 pycom03g05850 pycom03g09810 pycom07g02120 pycom07g02790 pycom07g02800 pycom07g03210 pycom07g03660 pycom07g03670 pycom07g04350 pycom08g10780 pycom08g10840 pycom08g10910 pycom11g05650 pycom11g05670 pycom11g05800 pycom11g05880 pycom11g05890 pycom11g05940 pycom11g06490 pycom11g06500 pycom11g06520 pycom11g06560 pycom11g06570 pycom11g11230 pycom11g13650 pycom17g05700
rosa_chinensis RchiOBHm_Chr1g0318341 RchiOBHm_Chr1g0318901 RchiOBHm_Chr1g0318931 RchiOBHm_Chr1g0327301 RchiOBHm_Chr1g0328491 RchiOBHm_Chr1g0336761 RchiOBHm_Chr1g0336831 RchiOBHm_Chr1g0340721 RchiOBHm_Chr1g0342461 RchiOBHm_Chr1g0342471 RchiOBHm_Chr1g0342481 RchiOBHm_Chr1g0346131 RchiOBHm_Chr1g0346191 RchiOBHm_Chr1g0346211 RchiOBHm_Chr1g0346241 RchiOBHm_Chr1g0346261 RchiOBHm_Chr1g0346281 RchiOBHm_Chr1g0346461 RchiOBHm_Chr1g0346471 RchiOBHm_Chr1g0346481 RchiOBHm_Chr1g0346501 RchiOBHm_Chr1g0347691 RchiOBHm_Chr1g0347701 RchiOBHm_Chr1g0347751 RchiOBHm_Chr1g0347791 RchiOBHm_Chr1g0347971 RchiOBHm_Chr1g0349661 RchiOBHm_Chr1g0349741 RchiOBHm_Chr1g0357561 RchiOBHm_Chr3g0492601 RchiOBHm_Chr5g0039181 RchiOBHm_Chr5g0039231 RchiOBHm_Chr5g0039241 RchiOBHm_Chr5g0039251 RchiOBHm_Chr5g0039531 RchiOBHm_Chr5g0044001 RchiOBHm_Chr5g0044571 RchiOBHm_Chr5g0044611 RchiOBHm_Chr5g0044631 RchiOBHm_Chr5g0044641 RchiOBHm_Chr5g0044651 RchiOBHm_Chr5g0044661 RchiOBHm_Chr5g0044681 RchiOBHm_Chr5g0045221 RchiOBHm_Chr5g0045901 RchiOBHm_Chr5g0045991 RchiOBHm_Chr5g0046001 RchiOBHm_Chr5g0046011
rosa_laevigata RLG00000028715 RLG00000028718 RLG00000029034 RLG00000029926 RLG00000030516 RLG00000034285 RLG00000034288
rosa_multiflora Rmu_co7987576.1_g000001 Rmu_co8028038.1_g000001 Rmu_co8104858.1_g000001 Rmu_co8185828.1_g000001 Rmu_co8227651.1_g000001 Rmu_co8235061.1_g000001 Rmu_co8246845.1_g000001 Rmu_co8254315.1_g000001 Rmu_co8284899.1_g000001 Rmu_co8401461.1_g000001 Rmu_co8475625.1_g000001 Rmu_co8502681.1_g000001 Rmu_sc0000250.1_g000005 Rmu_sc0000492.1_g000001 Rmu_sc0000533.1_g000004 Rmu_sc0000795.1_g000114 Rmu_sc0000831.1_g000039 Rmu_sc0000907.1_g000014 Rmu_sc0000907.1_g000034 Rmu_sc0001035.1_g000007 Rmu_sc0001035.1_g000011 Rmu_sc0001035.1_g000012 Rmu_sc0001099.1_g000003 Rmu_sc0001157.1_g000008 Rmu_sc0001212.1_g000016 Rmu_sc0001212.1_g000017 Rmu_sc0001304.1_g000027 Rmu_sc0001304.1_g000033 Rmu_sc0001773.1_g000019 Rmu_sc0001836.1_g000069 Rmu_sc0001856.1_g000004 Rmu_sc0002286.1_g000003 Rmu_sc0002286.1_g000004 Rmu_sc0002286.1_g000005 Rmu_sc0002286.1_g000007 Rmu_sc0002286.1_g000015 Rmu_sc0002495.1_g000025 Rmu_sc0002545.1_g000008 Rmu_sc0002545.1_g000009 Rmu_sc0002662.1_g000009 Rmu_sc0003363.1_g000019 Rmu_sc0003363.1_g000022 Rmu_sc0003600.1_g000057 Rmu_sc0003809.1_g000036 Rmu_sc0003809.1_g000037 Rmu_sc0005008.1_g000026 Rmu_sc0005008.1_g000028 Rmu_sc0005028.1_g000001 Rmu_sc0005144.1_g000022 Rmu_sc0005167.1_g000004 Rmu_sc0005626.1_g000005 Rmu_sc0005626.1_g000018 Rmu_sc0006228.1_g000011 Rmu_sc0006609.1_g000007 Rmu_sc0006609.1_g000009 Rmu_sc0006609.1_g000015 Rmu_sc0006609.1_g000016 Rmu_sc0006609.1_g000017 Rmu_sc0006609.1_g000018 Rmu_sc0007060.1_g000003 Rmu_sc0007318.1_g000011 Rmu_sc0007992.1_g000002 Rmu_sc0009172.1_g000001 Rmu_sc0010151.1_g000010 Rmu_sc0010151.1_g000011 Rmu_sc0011778.1_g000001 Rmu_sc0011778.1_g000005 Rmu_sc0011778.1_g000009 Rmu_sc0012293.1_g000001 Rmu_sc0012293.1_g000002 Rmu_sc0016606.1_g000001 Rmu_sc0016836.1_g000001 Rmu_sc0021084.1_g000008 Rmu_sc0021449.1_g000001 Rmu_sc0026523.1_g000001 Rmu_sc0027133.1_g000003 Rmu_sc0038674.1_g000001 Rmu_ssc0000255.1_g000053 Rmu_ssc0000255.1_g000063 Rmu_ssc0000255.1_g000064 Rmu_ssc0000263.1_g000004 Rmu_ssc0000400.1_g000027
rosa_roxburghii Rroxscaffold_1G00035290 Rroxscaffold_1G00036350 Rroxscaffold_1G00036360 Rroxscaffold_1G00036400 Rroxscaffold_1G00036460 Rroxscaffold_1G00037000 Rroxscaffold_1G00040440 Rroxscaffold_1G00041890 Rroxscaffold_1G00041920 Rroxscaffold_4G00307460 Rroxscaffold_4G00307500 Rroxscaffold_4G00308500 Rroxscaffold_4G00308510 Rroxscaffold_4G00308770 Rroxscaffold_4G00313020 Rroxscaffold_4G00321580 Rroxscaffold_4G00323030 Rroxscaffold_4G00326850 Rroxscaffold_4G00328770 Rroxscaffold_4G00328780 Rroxscaffold_4G00329310 Rroxscaffold_5G00352110
rosa_rugosa Rorug01G0020700 Rorug01G0023000 Rorug01G0023100 Rorug01G0023200 Rorug01G0023300 Rorug01G0023400 Rorug01G0024500 Rorug01G0025100 Rorug01G0025200 Rorug01G0025400 Rorug01G0025400 Rorug01G0064700 Rorug01G0065300 Rorug01G0127600 Rorug01G0128000 Rorug01G0148000.1 Rorug01G0150500.1 Rorug01G0161600.1 Rorug01G0161800.1 Rorug01G0163600.1 Rorug01G0178300 Rorug01G0178500 Rorug01G0178700 Rorug01G0179900 Rorug01G0180200 Rorug01G0180300 Rorug01G0180400 Rorug01G0189000 Rorug01G0189100 Rorug01G0190500 Rorug01G0204800 Rorug05G0177200 Rorug05G0210300 Rorug05G0210300 Rorug05G0210300 Rorug05G0215400 Rorug05G0215400 Rorug05G0215400 Rorug05G0215400 Rorug05G0215500 Rorug05G0215600 Rorug05G0215800 Rorug05G0215900 Rorug05G0215900 Rorug05G0216000 Rorug05G0216200 Rorug05G0216300 Rorug05G0221900 Rorug07G0276700
rosa_samantha Rh1BG028400 Rh1BG033500 Rh1BG065100 Rh1BG073100 Rh1BG073200 Rh1BG117000 Rh1BG164000 Rh1BG164200 Rh1BG172100 Rh1BG173900 Rh1BG174100 Rh1BG188400 Rh1CG036000 Rh1CG036500 Rh1CG089900 Rh1CG140200 Rh1CG164700 Rh1CG182600 Rh1CG182900 Rh1CG183400 Rh1CG191300 Rh1CG192000 Rh1CG207700 Rh1DG033800 Rh1DG033900 Rh1DG096000 Rh5AG299900 Rh5AG304500 Rh5AG307100 Rh5AG307500 Rh5CG301600 Rh5CG329800 Rh5CG333800 Rh5DG311400 Rh5DG316300 Rh5DG316400 Rh5DG316700 Rh5DG316800 Rh5DG316900 Rh5DG326100 Rh7AG431900 Rh7CG451000
rosa_wichuraiana Rw0G007840 Rw0G009850 Rw0G013000 Rw0G015090 Rw0G021190 Rw1G002610 Rw1G004320 Rw1G006520 Rw1G007250 Rw1G012020 Rw1G013830 Rw1G014770 Rw1G016300 Rw1G016600 Rw1G016650 Rw1G017290 Rw1G017420 Rw1G017630 Rw1G017650 Rw1G017660 Rw1G017690 Rw1G017700 Rw1G018960 Rw5G024660 Rw5G024700 Rw5G024720 Rw5G024740 Rw5G024980 Rw5G027710 Rw5G027720 Rw5G027730 Rw5G027740 Rw5G027750 Rw5G028130 Rw5G028740 Rw5G028750 Rw5G028790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1317
Acc36I ACCTGC 1 cut(s) 446
AccII CGCG 1 cut(s) 915
AciI CCGC 3 cut(s) 11, 96, 915
AclWI GGATC 2 cut(s) 629, 1058
AcoI YGGCCR 1 cut(s) 1353
AcsI RAATTY 3 cut(s) 399, 1162, 1319
AcuI CTGAAG 1 cut(s) 336
AcyI GRCGYC 2 cut(s) 171, 892
AfaI GTAC 5 cut(s) 333, 521, 746, 970, 1453
AfiI CCNNNNNNNGG 2 cut(s) 292, 608
AgeI ACCGGT 1 cut(s) 110
AgsI TTSAA 5 cut(s) 451, 492, 506, 655, 1431
AhlI ACTAGT 1 cut(s) 1336
AloI GAACNNNNNNTCC 2 cut(s) 287, 319
AluBI AGCT 6 cut(s) 200, 223, 299, 646, 1124, 1251
AluI AGCT 6 cut(s) 200, 223, 299, 646, 1124, 1251
Alw26I GTCTC 4 cut(s) 128, 365, 1081, 1269
AlwI GGATC 2 cut(s) 629, 1058
AlwNI CAGNNNCTG 1 cut(s) 214
AoxI GGCC 3 cut(s) 1111, 1141, 1353
ApeKI GCWGC 2 cut(s) 484, 1124
ApoI RAATTY 3 cut(s) 399, 1162, 1319
ArsI GACNNNNNNTTYG 2 cut(s) 219, 251
AseI ATTAAT 1 cut(s) 1079
AsiGI ACCGGT 1 cut(s) 110
AspLEI GCGC 1 cut(s) 1152
AspS9I GGNCC 3 cut(s) 108, 250, 1141
AsuHPI GGTGA 1 cut(s) 125
AvaII GGWCC 2 cut(s) 108, 250
BaeGI GKGCMC 1 cut(s) 364
BarI GAAGNNNNNNTAC 2 cut(s) 1350, 1382
BbvI GCAGC 2 cut(s) 471, 1111
BccI CCATC 5 cut(s) 554, 958, 993, 1345, 1384
BceAI ACGGC 1 cut(s) 11
BcoDI GTCTC 4 cut(s) 128, 365, 1081, 1269
BcuI ACTAGT 1 cut(s) 1336
BfaI CTAG 4 cut(s) 318, 413, 1337, 1424
BfmI CTRYAG 1 cut(s) 378
BfuAI ACCTGC 1 cut(s) 446
BglII AGATCT 1 cut(s) 1360
BisI GCNGC 2 cut(s) 485, 1125
BlpI GCTNAGC 2 cut(s) 642, 1247
BlsI GCNGC 2 cut(s) 486, 1126
Bme18I GGWCC 2 cut(s) 108, 250
BmgT120I GGNCC 3 cut(s) 108, 250, 1141
BmiI GGNNCC 2 cut(s) 25, 1142
BmsI GCATC 3 cut(s) 232, 427, 652
BplI GAGNNNNNCTC 2 cut(s) 15, 47
BpmI CTGGAG 1 cut(s) 927
Bpu1102I GCTNAGC 2 cut(s) 642, 1247
BpuEI CTTGAG 5 cut(s) 57, 425, 791, 1022, 1259
BsaBI GATNNNNATC 1 cut(s) 1068
BsaHI GRCGYC 2 cut(s) 171, 892
BsaJI CCNNGG 2 cut(s) 174, 498
BsaWI WCCGGW 2 cut(s) 35, 110
BsaXI ACNNNNNCTCC 2 cut(s) 125, 155
Bsc4I CCNNNNNNNGG 2 cut(s) 292, 608
Bse118I RCCGGY 2 cut(s) 110, 1234
Bse1I ACTGG 1 cut(s) 583
Bse3DI GCAATG 1 cut(s) 1440
Bse8I GATNNNNATC 1 cut(s) 1068
BseDI CCNNGG 2 cut(s) 174, 498
BseGI GGATG 3 cut(s) 886, 1356, 1386
BseJI GATNNNNATC 1 cut(s) 1068
BseLI CCNNNNNNNGG 2 cut(s) 292, 608
BseMI GCAATG 1 cut(s) 1440
BseMII CTCAG 4 cut(s) 291, 656, 677, 699
BseNI ACTGG 1 cut(s) 583
BseRI GAGGAG 1 cut(s) 191
BseSI GKGCMC 1 cut(s) 364
BseXI GCAGC 2 cut(s) 471, 1111
Bsh1236I CGCG 1 cut(s) 915
BshFI GGCC 3 cut(s) 1113, 1143, 1355
BshTI ACCGGT 1 cut(s) 110
BsiSI CCGG 4 cut(s) 36, 111, 286, 1235
BslI CCNNNNNNNGG 2 cut(s) 292, 608
BsmAI GTCTC 4 cut(s) 128, 365, 1081, 1269
BsmBI CGTCTC 1 cut(s) 128
BsmI GAATGC 1 cut(s) 1227
BsnI GGCC 3 cut(s) 1113, 1143, 1355
Bsp1286I GDGCHC 1 cut(s) 364
Bsp143I GATC 8 cut(s) 78, 144, 264, 621, 924, 1063, 1360, 1420
Bsp1720I GCTNAGC 2 cut(s) 642, 1247
BspACI CCGC 3 cut(s) 11, 96, 915
BspANI GGCC 3 cut(s) 1113, 1143, 1355
BspCNI CTCAG 4 cut(s) 292, 655, 678, 700
BspFNI CGCG 1 cut(s) 915
BspLI GGNNCC 2 cut(s) 25, 1142
BspMI ACCTGC 1 cut(s) 446
BspPI GGATC 2 cut(s) 629, 1058
BsrDI GCAATG 1 cut(s) 1440
BsrFI RCCGGY 2 cut(s) 110, 1234
BsrI ACTGG 1 cut(s) 583
BssAI RCCGGY 2 cut(s) 110, 1234
BssECI CCNNGG 2 cut(s) 174, 498
BssMI GATC 8 cut(s) 78, 144, 264, 621, 924, 1063, 1360, 1420
BssNI GRCGYC 2 cut(s) 171, 892
Bst4CI ACNGT 2 cut(s) 744, 1451
Bst6I CTCTTC 2 cut(s) 520, 1214
BstACI GRCGYC 2 cut(s) 171, 892
BstAPI GCANNNNNTGC 1 cut(s) 1034
BstC8I GCNNGC 1 cut(s) 464
BstDEI CTNAG 7 cut(s) 196, 219, 300, 642, 686, 708, 1247
BstDSI CCRYGG 1 cut(s) 498
BstF5I GGATG 3 cut(s) 886, 1356, 1386
BstFNI CGCG 1 cut(s) 915
BstHHI GCGC 1 cut(s) 1152
BstKTI GATC 8 cut(s) 81, 147, 267, 624, 927, 1066, 1363, 1423
BstMAI GTCTC 4 cut(s) 128, 365, 1081, 1269
BstMBI GATC 8 cut(s) 78, 144, 264, 621, 924, 1063, 1360, 1420
BstMWI GCNNNNNNNGC 3 cut(s) 220, 1034, 1149
BstNSI RCATGY 1 cut(s) 1037
BstSFI CTRYAG 1 cut(s) 378
BstSLI GKGCMC 1 cut(s) 364
BstUI CGCG 1 cut(s) 915
BstV1I GCAGC 2 cut(s) 471, 1111
BstX2I RGATCY 2 cut(s) 1063, 1360
BstYI RGATCY 2 cut(s) 1063, 1360
BsuRI GGCC 3 cut(s) 1113, 1143, 1355
BtgI CCRYGG 1 cut(s) 498
BtsCI GGATG 3 cut(s) 886, 1356, 1386
BtsI GCAGTG 2 cut(s) 215, 672
BtsIMutI CAGTG 3 cut(s) 215, 672, 740
BveI ACCTGC 1 cut(s) 446
Cac8I GCNNGC 1 cut(s) 464
CaiI CAGNNNCTG 1 cut(s) 214
CfoI GCGC 1 cut(s) 1152
Cfr10I RCCGGY 2 cut(s) 110, 1234
Cfr13I GGNCC 3 cut(s) 108, 250, 1141
CpoI CGGWCCG 1 cut(s) 108
CseI GACGC 2 cut(s) 179, 881
Csp6I GTAC 5 cut(s) 332, 520, 745, 969, 1452
CspAI ACCGGT 1 cut(s) 110
CspCI CAANNNNNGTGG 2 cut(s) 480, 515
CspI CGGWCCG 1 cut(s) 108
CviAII CATG 4 cut(s) 155, 613, 693, 1034
CviQI GTAC 5 cut(s) 332, 520, 745, 969, 1452
DdeI CTNAG 7 cut(s) 196, 219, 300, 642, 686, 708, 1247
DpnI GATC 8 cut(s) 80, 146, 266, 623, 926, 1065, 1362, 1422
DpnII GATC 8 cut(s) 78, 144, 264, 621, 924, 1063, 1360, 1420
EaeI YGGCCR 1 cut(s) 1353
Eam1104I CTCTTC 2 cut(s) 520, 1214
EarI CTCTTC 2 cut(s) 520, 1214
Eco147I AGGCCT 1 cut(s) 1113
Eco47I GGWCC 2 cut(s) 108, 250
Eco57I CTGAAG 1 cut(s) 336
EcoO109I RGGNCCY 2 cut(s) 250, 1141
EcoT22I ATGCAT 1 cut(s) 1039
Esp3I CGTCTC 1 cut(s) 128
FaeI CATG 4 cut(s) 158, 616, 696, 1037
FatI CATG 4 cut(s) 154, 612, 692, 1033
FauNDI CATATG 1 cut(s) 1199
Fnu4HI GCNGC 2 cut(s) 485, 1125
FokI GGATG 3 cut(s) 893, 1363, 1393
Fsp4HI GCNGC 2 cut(s) 485, 1125
FspBI CTAG 4 cut(s) 318, 413, 1337, 1424
GlaI GCGC 1 cut(s) 1151
GluI GCNGC 2 cut(s) 485, 1125
GsuI CTGGAG 1 cut(s) 927
HaeIII GGCC 3 cut(s) 1113, 1143, 1355
HapII CCGG 4 cut(s) 36, 111, 286, 1235
HgaI GACGC 2 cut(s) 179, 881
HhaI GCGC 1 cut(s) 1152
Hin1I GRCGYC 2 cut(s) 171, 892
Hin1II CATG 4 cut(s) 158, 616, 696, 1037
Hin6I GCGC 1 cut(s) 1150
HinP1I GCGC 1 cut(s) 1150
HinfI GANTC 6 cut(s) 68, 383, 471, 594, 902, 1157
HpaII CCGG 4 cut(s) 36, 111, 286, 1235
HphI GGTGA 1 cut(s) 125
Hpy166II GTNNAC 1 cut(s) 520
Hpy188I TCNGA 7 cut(s) 308, 514, 626, 709, 1156, 1213, 1333
Hpy188III TCNNGA 6 cut(s) 74, 268, 404, 845, 906, 1073
Hpy8I GTNNAC 1 cut(s) 520
Hpy99I CGWCG 3 cut(s) 142, 371, 662
HpyAV CCTTC 4 cut(s) 498, 500, 664, 1124
HpyCH4III ACNGT 2 cut(s) 744, 1451
HpyCH4IV ACGT 1 cut(s) 140
HpyCH4V TGCA 7 cut(s) 245, 462, 665, 994, 1028, 1037, 1127
HpyF10VI GCNNNNNNNGC 3 cut(s) 220, 1034, 1149
HpyF3I CTNAG 7 cut(s) 196, 219, 300, 642, 686, 708, 1247
HpySE526I ACGT 1 cut(s) 140
Hsp92I GRCGYC 2 cut(s) 171, 892
Hsp92II CATG 4 cut(s) 158, 616, 696, 1037
HspAI GCGC 1 cut(s) 1150
Kzo9I GATC 8 cut(s) 78, 144, 264, 621, 924, 1063, 1360, 1420
LmnI GCTCC 2 cut(s) 23, 798
Lsp1109I GCAGC 2 cut(s) 471, 1111
LweI GCATC 3 cut(s) 232, 427, 652
MaeI CTAG 4 cut(s) 318, 413, 1337, 1424
MaeII ACGT 1 cut(s) 140
MaeIII GTNAC 4 cut(s) 574, 754, 931, 1193
MalI GATC 8 cut(s) 80, 146, 266, 623, 926, 1065, 1362, 1422
MboI GATC 8 cut(s) 78, 144, 264, 621, 924, 1063, 1360, 1420
MboII GAAGA 8 cut(s) 34, 537, 838, 1019, 1181, 1231, 1370, 1406
MflI RGATCY 2 cut(s) 1063, 1360
MhlI GDGCHC 1 cut(s) 364
MluCI AATT 8 cut(s) 399, 766, 865, 1076, 1080, 1092, 1162, 1319
MlyI GAGTC 4 cut(s) 62, 377, 603, 911
MmeI TCCRAC 6 cut(s) 45, 111, 237, 1001, 1311, 1381
Mph1103I ATGCAT 1 cut(s) 1039
MseI TTAA 7 cut(s) 281, 552, 681, 726, 801, 887, 1079
MspA1I CMGCKG 1 cut(s) 96
MspI CCGG 4 cut(s) 36, 111, 286, 1235
Mva1269I GAATGC 1 cut(s) 1227
MvnI CGCG 1 cut(s) 915
MwoI GCNNNNNNNGC 3 cut(s) 220, 1034, 1149
NdeI CATATG 1 cut(s) 1199
NdeII GATC 8 cut(s) 78, 144, 264, 621, 924, 1063, 1360, 1420
NlaIII CATG 4 cut(s) 158, 616, 696, 1037
NlaIV GGNNCC 2 cut(s) 25, 1142
NmeAIII GCCGAG 1 cut(s) 199
NmuCI GTSAC 2 cut(s) 931, 1193
NsiI ATGCAT 1 cut(s) 1039
NspI RCATGY 1 cut(s) 1037
PceI AGGCCT 1 cut(s) 1113
PcsI WCGNNNNNNNCGW 2 cut(s) 171, 654
PctI GAATGC 1 cut(s) 1227
PfeI GAWTC 2 cut(s) 471, 1157
PinAI ACCGGT 1 cut(s) 110
PkrI GCNGC 2 cut(s) 486, 1126
PleI GAGTC 4 cut(s) 62, 377, 602, 910
PpsI GAGTC 4 cut(s) 62, 377, 602, 910
PpuMI RGGWCCY 1 cut(s) 250
PshBI ATTAAT 1 cut(s) 1079
PsiI TTATAA 1 cut(s) 1317
Psp5II RGGWCCY 1 cut(s) 250
PspN4I GGNNCC 2 cut(s) 25, 1142
PspPI GGNCC 3 cut(s) 108, 250, 1141
PspPPI RGGWCCY 1 cut(s) 250
PstNI CAGNNNCTG 1 cut(s) 214
PsuI RGATCY 2 cut(s) 1063, 1360
RsaI GTAC 5 cut(s) 333, 521, 746, 970, 1453
RsaNI GTAC 5 cut(s) 332, 520, 745, 969, 1452
Rsr2I CGGWCCG 1 cut(s) 108
RsrII CGGWCCG 1 cut(s) 108
SaqAI TTAA 7 cut(s) 281, 552, 681, 726, 801, 887, 1079
SatI GCNGC 2 cut(s) 485, 1125
Sau3AI GATC 8 cut(s) 78, 144, 264, 621, 924, 1063, 1360, 1420
Sau96I GGNCC 3 cut(s) 108, 250, 1141
SchI GAGTC 4 cut(s) 62, 377, 603, 911
SduI GDGCHC 1 cut(s) 364
SfaNI GCATC 3 cut(s) 232, 427, 652
SfcI CTRYAG 1 cut(s) 378
SinI GGWCC 2 cut(s) 108, 250
SmlI CTYRAG 5 cut(s) 72, 404, 806, 1001, 1274
SmoI CTYRAG 5 cut(s) 72, 404, 806, 1001, 1274
SpeI ACTAGT 1 cut(s) 1336
Sse9I AATT 8 cut(s) 399, 766, 865, 1076, 1080, 1092, 1162, 1319
SseBI AGGCCT 1 cut(s) 1113
SsiI CCGC 3 cut(s) 11, 96, 915
SspMI CTAG 4 cut(s) 318, 413, 1337, 1424
StuI AGGCCT 1 cut(s) 1113
TaaI ACNGT 2 cut(s) 744, 1451
TaiI ACGT 1 cut(s) 143
TaqI TCGA 3 cut(s) 165, 366, 1298
TasI AATT 8 cut(s) 399, 766, 865, 1076, 1080, 1092, 1162, 1319
TfiI GAWTC 2 cut(s) 471, 1157
Tru1I TTAA 7 cut(s) 281, 552, 681, 726, 801, 887, 1079
Tru9I TTAA 7 cut(s) 281, 552, 681, 726, 801, 887, 1079
TscAI CASTG 3 cut(s) 215, 672, 747
TseFI GTSAC 2 cut(s) 931, 1193
TseI GCWGC 2 cut(s) 484, 1124
Tsp45I GTSAC 2 cut(s) 931, 1193
TspDTI ATGAA 6 cut(s) 79, 143, 434, 1062, 1397, 1429
TspGWI ACGGA 3 cut(s) 121, 487, 537
TspRI CASTG 3 cut(s) 215, 672, 747
VpaK11BI GGWCC 2 cut(s) 108, 250
VspI ATTAAT 1 cut(s) 1079
XapI RAATTY 3 cut(s) 399, 1162, 1319
XceI RCATGY 1 cut(s) 1037
XspI CTAG 4 cut(s) 318, 413, 1337, 1424
Zsp2I ATGCAT 1 cut(s) 1039
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.