RchiOBHm_Chr1g0347971

disease resistance

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
40726527 .. 40729972
3446 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57404

Sequence Viewer

Length: 3060 bp
ATGGAGCAGAGAAGAGATGTCTGGGATATGGAAGCAAGTGCTGGATACAGGGTATCACAAACAATACCGTCAACTTCTTTGGTAGAAGACTCTGTGTATGGAAGAGATGAGGAGAAAGAAGGATTCATTAAATTATTGCTATCAGATGATGAGACTGGCAATAAAATAGGTGTGCTTCCTATCGTGGGTATGGGTGGAATCGGAAAAACCACCCTCGCCCAGTTTCTATACAACGATGTTAGAGTCAAGCAACATTTTCACATCCAAGCATGGGTTTGCGTTTCAAAAGAATTTGATATCCTTAGGATCTCGCAAAGCATTTATGAGTCCCTCACCTTAGAAGCTTGCATAATCAAGAACCTAGATCTGCTTCAATCAAAGTTGCAGGACATTTTGTTGGGGAAAAGATTCTTCTTTGTTCTTGATGACATCTGGAACAAGAATTATAGCCAGTTGGAATTCTTAACACGTCTCTTTCAGTCTGGAGCACATGGAAGCAAGATCATTGTCACAACACGCGATGAAGATGTTGCACGTAAGATGAGTAGGCTTGAAGCTCACCATCTCATGCCAATGTCTGAGCAAGATAGCTGGTCGTTATTTGAAAAACATGCCTTCAAAAATGCAGATGTTGGTGCACGCTCACGTCTTGAAGAAATCGGTAGACAAATTGTTCAAAAGTGCAACGGTCTTCCCTTGGCTATTAAGTCACTTGGGGGTCTCTTATGTTCTAAACTATCTCCTGAGGAATGGGAAAGCATATTGGATAGTGACATCTGGGAATTGACGCAGGAGGAGAGTGATGACATTCTACCATCTCTTTGGTTGAGCTATTTGGATTTGCCTCTACATCTCAAGCGTTGTTTTAGCTACTGTTCGATATTTCCCAAGAATTATCGACTTAAAAAATCAGAACTGCTTTTATTGTGGAATGCCCAAGGTTTCTTGCAACCCCAAAAGAAGAAATTGGTAGAACAAGTTGGGGAAGAGTACTTCAATGATCTAATCTCAAGGTCATTTTTCCAACGTTCATCAAGTTCCGAACACTTCATCATGCATGACCTTATCAAGGATTTAGCAAATTTTGTATCTGGAGAATTTTCTGTTAGGTGGGAGAATAGTGAATCACCCAACATTTTGAGGGAGACTCGTCATTTCTCATATATGGAGAAACACGGTGATAGCTTTGCCAGACTTGAGGCTATACATGAAGCTAAATATTTGCGCACTCTTCTACCTGTACCTCAATATGCATCCTATCTGGGGACATTCTATAGAGACAAATTCCAAAAAGTACTACATGAGGTATTGCCAAAACTACAATGTTTAAGAATGTTGAATTTATCACTGTATGATATTATGAAATTGCCTGATTCGATTGACAACTTGAAACATCTAAGGCACTTGGACATGTCTGAAACTCCCATTAGAAAGTTACCTAATAGTATTTGTACTTTGTATAATTTGCAAGCATTATTGTTGCGGGGGTGTCGAAATCTTGTGGAACTGCCAACCAAGTTGGGACGATTGATCAGCTTGAGGCATCTGGATATTAAATATACAAAGATAGAAAAGATGCCACCACATATGGGTAATTTCAAGGACCTGCAGATACTAACCGAGTTTGTGCTGGACAAATATACCGAAGGCCATAATGCTTTAGAGCTAAAGAAGCTTCAAAATTTGCGTGGAACACTTTGTATTTCAGGGCTTGAGAATGTTGTGGATGGCAGCGCTTTGGTAGCCAACATTGTGAGGGACAAGGAGTTTGTTACCGAATTAAATTTGAATTGGAAATATACAATTGAAAAAGGCGATATGGTAGAGGAAAGAGAAGTGCTTGAGCAGCTCCAACCTCACCTGAAACTGAAAAGGCTTACAATTAAAGATTATGGAGGCAAAATGTTTCCAGGTTGGTCAGAATATTATTCTTCCGAATCCTGTCATCTTGTTTATCTTGAACTTGTTGATTGTGTGAATTGTACCTCATTGCCACCATTGGGACAGCTACCTTACCTCAGAGAGCTTCATATTTCTGGGTTAGGTGAAGTGGTGTCCATAGGTTCTGAATTCTATTATGGTGACGGCAATACTAGTACTAGTGTGAAAAAACCATTTAGATGTCTACGGTTTTTAAAATTCGACAATATGTGGAGGTGGCAAGAATGGTGTTATGTTGTAACCAAAAGAGAAAATAAAGAATGTTGTGTTGGAGGTGACGATAATGAAGGTGGAGTTTTTCCTAATCTTGTGGAGCTTGTTCTATCATGGTGTCCAGATCTTATCGGGATATTAGCGGTTGACAGTTTCCCGATGCTGAAAGAGGTCGACTTGAATGGGATTAATTTATCACTAGACTCTAGACTCTTATCCGTGAATAAGTTGCGATTAGAGAACTGTGACAAATATTTTATCTATGAAGAAGGAGGTGGACTTGAGTGTCCAACTTTTCTCGATGGAGTGTTGCATGCACCCAACTTGACCAGTCTAGAGATAAAAGCATGTCGGAAACTCATTGCATGGCCGAAACAAATGCACTCCCTTGTCCCATCTCTTGTGTCTTTGTCGGTAGTAGATTGCGGAAGATTGGAATGTTTTCCGGAAGGGGGATTCCCGTCAAAGTTAAAATCACTTGTCATCATGGGCTGTACTGTGGATAAAAAGAGTGGGCAAAATCTGAACGAGGGTCTCCGGAGACTCACCTCTCTTGAAAAATTGAGACTTGACTTTGCGAGGGCAGAATATTGGTTTGCTGCGGAGGGGCTGTTGCCCAGCACTCTCACTCATCTCGAGATCTGGAATCTGAAGGGCGAGACCATTGACGGCGTCAAGTGGTTTGGCCATCTCAACTCTCTTCAACAATTGGTTATTTGCCACTGCTCTGCGCTCCGGTGCTTGCCAGATAGTGGGCTACCCACTTCTCTTCAACGCTTGCAGATTGTGCGTTGTCCTTGGCTTAAGGAGCGGTACCGAAGTATGAGTGGCGAACATTGGCGCAAGATTGCTCACATCCCCTTCATAATGATCGATGGGTTGAGAAAAGTCAGAAAACTGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

1019

Amino Acids

117.18

Weight (kDa)

6.58

Isoelectric Point (pI)

51.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 42 - 209 2.7e-37 NB-ARC domain
WHD_DRP PF23559 294 - 360 1.6e-24 Disease resistance protein Winged helix domain
LRR_14 PF23598 436 - 717 8e-26 Leucine-rich repeat region
LRR_R13L1-DRL21 PF25019 555 - 680 1e-31 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000035)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G14470 AT3G14470
fragaria_vesca FvH4_1g01220 FvH4_1g01230 FvH4_3g24551 FvH4_3g24552 FvH4_4g29310 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_6g39860 FvH4_6g39861 FvH4_7g11380
malus_domestica MD00G1072900.v1.1 MD00G1073100.v1.1 MD00G1120600.v1.1 MD00G1120900.v1.1 MD00G1121000.v1.1 MD00G1121200.v1.1 MD00G1152300.v1.1 MD00G1203600.v1.1 MD00G1203700.v1.1 MD02G1250900.v1.1 MD02G1251900.v1.1 MD02G1252800.v1.1 MD02G1277100.v1.1 MD02G1277200.v1.1 MD02G1277400.v1.1 MD02G1286100.v1.1 MD02G1286200.v1.1 MD02G1286900.v1.1 MD03G1006200.v1.1 MD03G1015300.v1.1 MD03G1015500.v1.1 MD03G1015900.v1.1 MD03G1016000.v1.1 MD03G1024900.v1.1 MD03G1025000.v1.1 MD03G1025500.v1.1 MD03G1026000.v1.1 MD03G1026500.v1.1 MD03G1031800.v1.1 MD03G1072200.v1.1 MD07G1028000.v1.1 MD07G1028300.v1.1 MD07G1029400.v1.1 MD07G1029500.v1.1 MD07G1040300.v1.1 MD07G1044500.v1.1 MD07G1045100.v1.1 MD07G1045500.v1.1 MD07G1050700.v1.1 MD07G1050900.v1.1 MD07G1055800.v1.1 MD07G1056200.v1.1 MD07G1056600.v1.1 MD07G1057100.v1.1 MD07G1057200.v1.1 MD08G1056500.v1.1 MD08G1056600.v1.1 MD08G1056700.v1.1 MD08G1056800.v1.1 MD08G1128800.v1.1 MD08G1129500.v1.1 MD08G1130000.v1.1 MD11G1066700.v1.1 MD11G1066800.v1.1 MD11G1066900.v1.1 MD11G1067000.v1.1 MD11G1067500.v1.1 MD11G1069800.v1.1 MD11G1070400.v1.1 MD11G1071100.v1.1 MD11G1071200.v1.1 MD11G1077200.v1.1 MD11G1077700.v1.1 MD11G1077900.v1.1 MD11G1078100.v1.1 MD11G1078300.v1.1 MD11G1078500.v1.1 MD11G1135200.v1.1 MD11G1135400.v1.1 MD11G1152900.v1.1 MD11G1153000.v1.1 MD17G1056800.v1.1
prunus_persica Prupe.2G037800_v2.0.a1 Prupe.2G037800_v2.0.a1 Prupe.2G037800_v2.0.a1 Prupe.2G037800_v2.0.a1 Prupe.2G040500_v2.0.a1 Prupe.2G040700_v2.0.a1 Prupe.2G043000_v2.0.a1 Prupe.2G043100_v2.0.a1 Prupe.2G043200_v2.0.a1 Prupe.2G046000_v2.0.a1 Prupe.2G046300_v2.0.a1 Prupe.2G046400_v2.0.a1 Prupe.2G046400_v2.0.a1 Prupe.2G046700_v2.0.a1 Prupe.2G046900_v2.0.a1 Prupe.2G051100_v2.0.a1 Prupe.2G052200_v2.0.a1 Prupe.2G053600_v2.0.a1 Prupe.2G053600_v2.0.a1 Prupe.2G053600_v2.0.a1 Prupe.2G053600_v2.0.a1 Prupe.2G053700_v2.0.a1 Prupe.2G053800_v2.0.a1 Prupe.2G053900_v2.0.a1 Prupe.2G054000_v2.0.a1 Prupe.2G054100_v2.0.a1 Prupe.2G054200_v2.0.a1 Prupe.2G054300_v2.0.a1 Prupe.2G054300_v2.0.a1 Prupe.2G054300_v2.0.a1 Prupe.2G054300_v2.0.a1 Prupe.2G054500_v2.0.a1 Prupe.2G054700_v2.0.a1 Prupe.4G286000_v2.0.a1 Prupe.4G286000_v2.0.a1 Prupe.4G286000_v2.0.a1 Prupe.6G129800_v2.0.a1 Prupe.6G130000_v2.0.a1 Prupe.6G130000_v2.0.a1
pyrus_communis pycom02g23740 pycom02g23750 pycom02g24320 pycom03g00620 pycom03g01280 pycom03g01320 pycom03g01350 pycom03g01360 pycom03g01370 pycom03g01380 pycom03g01390 pycom03g02160 pycom03g02170 pycom03g05850 pycom03g09810 pycom07g02120 pycom07g02790 pycom07g02800 pycom07g03210 pycom07g03660 pycom07g03670 pycom07g04350 pycom08g10780 pycom08g10840 pycom08g10910 pycom11g05650 pycom11g05670 pycom11g05800 pycom11g05880 pycom11g05890 pycom11g05940 pycom11g06490 pycom11g06500 pycom11g06520 pycom11g06560 pycom11g06570 pycom11g11230 pycom11g13650 pycom17g05700
rosa_chinensis RchiOBHm_Chr1g0318341 RchiOBHm_Chr1g0318901 RchiOBHm_Chr1g0318931 RchiOBHm_Chr1g0327301 RchiOBHm_Chr1g0328491 RchiOBHm_Chr1g0336761 RchiOBHm_Chr1g0336831 RchiOBHm_Chr1g0340721 RchiOBHm_Chr1g0342461 RchiOBHm_Chr1g0342471 RchiOBHm_Chr1g0342481 RchiOBHm_Chr1g0346131 RchiOBHm_Chr1g0346191 RchiOBHm_Chr1g0346211 RchiOBHm_Chr1g0346241 RchiOBHm_Chr1g0346261 RchiOBHm_Chr1g0346281 RchiOBHm_Chr1g0346461 RchiOBHm_Chr1g0346471 RchiOBHm_Chr1g0346481 RchiOBHm_Chr1g0346501 RchiOBHm_Chr1g0347691 RchiOBHm_Chr1g0347701 RchiOBHm_Chr1g0347751 RchiOBHm_Chr1g0347791 RchiOBHm_Chr1g0347971 RchiOBHm_Chr1g0349661 RchiOBHm_Chr1g0349741 RchiOBHm_Chr1g0357561 RchiOBHm_Chr3g0492601 RchiOBHm_Chr5g0039181 RchiOBHm_Chr5g0039231 RchiOBHm_Chr5g0039241 RchiOBHm_Chr5g0039251 RchiOBHm_Chr5g0039531 RchiOBHm_Chr5g0044001 RchiOBHm_Chr5g0044571 RchiOBHm_Chr5g0044611 RchiOBHm_Chr5g0044631 RchiOBHm_Chr5g0044641 RchiOBHm_Chr5g0044651 RchiOBHm_Chr5g0044661 RchiOBHm_Chr5g0044681 RchiOBHm_Chr5g0045221 RchiOBHm_Chr5g0045901 RchiOBHm_Chr5g0045991 RchiOBHm_Chr5g0046001 RchiOBHm_Chr5g0046011
rosa_laevigata RLG00000028715 RLG00000028718 RLG00000029034 RLG00000029926 RLG00000030516 RLG00000034285 RLG00000034288
rosa_multiflora Rmu_co7987576.1_g000001 Rmu_co8028038.1_g000001 Rmu_co8104858.1_g000001 Rmu_co8185828.1_g000001 Rmu_co8227651.1_g000001 Rmu_co8235061.1_g000001 Rmu_co8246845.1_g000001 Rmu_co8254315.1_g000001 Rmu_co8284899.1_g000001 Rmu_co8401461.1_g000001 Rmu_co8475625.1_g000001 Rmu_co8502681.1_g000001 Rmu_sc0000250.1_g000005 Rmu_sc0000492.1_g000001 Rmu_sc0000533.1_g000004 Rmu_sc0000795.1_g000114 Rmu_sc0000831.1_g000039 Rmu_sc0000907.1_g000014 Rmu_sc0000907.1_g000034 Rmu_sc0001035.1_g000007 Rmu_sc0001035.1_g000011 Rmu_sc0001035.1_g000012 Rmu_sc0001099.1_g000003 Rmu_sc0001157.1_g000008 Rmu_sc0001212.1_g000016 Rmu_sc0001212.1_g000017 Rmu_sc0001304.1_g000027 Rmu_sc0001304.1_g000033 Rmu_sc0001773.1_g000019 Rmu_sc0001836.1_g000069 Rmu_sc0001856.1_g000004 Rmu_sc0002286.1_g000003 Rmu_sc0002286.1_g000004 Rmu_sc0002286.1_g000005 Rmu_sc0002286.1_g000007 Rmu_sc0002286.1_g000015 Rmu_sc0002495.1_g000025 Rmu_sc0002545.1_g000008 Rmu_sc0002545.1_g000009 Rmu_sc0002662.1_g000009 Rmu_sc0003363.1_g000019 Rmu_sc0003363.1_g000022 Rmu_sc0003600.1_g000057 Rmu_sc0003809.1_g000036 Rmu_sc0003809.1_g000037 Rmu_sc0005008.1_g000026 Rmu_sc0005008.1_g000028 Rmu_sc0005028.1_g000001 Rmu_sc0005144.1_g000022 Rmu_sc0005167.1_g000004 Rmu_sc0005626.1_g000005 Rmu_sc0005626.1_g000018 Rmu_sc0006228.1_g000011 Rmu_sc0006609.1_g000007 Rmu_sc0006609.1_g000009 Rmu_sc0006609.1_g000015 Rmu_sc0006609.1_g000016 Rmu_sc0006609.1_g000017 Rmu_sc0006609.1_g000018 Rmu_sc0007060.1_g000003 Rmu_sc0007318.1_g000011 Rmu_sc0007992.1_g000002 Rmu_sc0009172.1_g000001 Rmu_sc0010151.1_g000010 Rmu_sc0010151.1_g000011 Rmu_sc0011778.1_g000001 Rmu_sc0011778.1_g000005 Rmu_sc0011778.1_g000009 Rmu_sc0012293.1_g000001 Rmu_sc0012293.1_g000002 Rmu_sc0016606.1_g000001 Rmu_sc0016836.1_g000001 Rmu_sc0021084.1_g000008 Rmu_sc0021449.1_g000001 Rmu_sc0026523.1_g000001 Rmu_sc0027133.1_g000003 Rmu_sc0038674.1_g000001 Rmu_ssc0000255.1_g000053 Rmu_ssc0000255.1_g000063 Rmu_ssc0000255.1_g000064 Rmu_ssc0000263.1_g000004 Rmu_ssc0000400.1_g000027
rosa_roxburghii Rroxscaffold_1G00035290 Rroxscaffold_1G00036350 Rroxscaffold_1G00036360 Rroxscaffold_1G00036400 Rroxscaffold_1G00036460 Rroxscaffold_1G00037000 Rroxscaffold_1G00040440 Rroxscaffold_1G00041890 Rroxscaffold_1G00041920 Rroxscaffold_4G00307460 Rroxscaffold_4G00307500 Rroxscaffold_4G00308500 Rroxscaffold_4G00308510 Rroxscaffold_4G00308770 Rroxscaffold_4G00313020 Rroxscaffold_4G00321580 Rroxscaffold_4G00323030 Rroxscaffold_4G00326850 Rroxscaffold_4G00328770 Rroxscaffold_4G00328780 Rroxscaffold_4G00329310 Rroxscaffold_5G00352110
rosa_rugosa Rorug01G0020700 Rorug01G0023000 Rorug01G0023100 Rorug01G0023200 Rorug01G0023300 Rorug01G0023400 Rorug01G0024500 Rorug01G0025100 Rorug01G0025200 Rorug01G0025400 Rorug01G0025400 Rorug01G0064700 Rorug01G0065300 Rorug01G0127600 Rorug01G0128000 Rorug01G0148000.1 Rorug01G0150500.1 Rorug01G0161600.1 Rorug01G0161800.1 Rorug01G0163600.1 Rorug01G0178300 Rorug01G0178500 Rorug01G0178700 Rorug01G0179900 Rorug01G0180200 Rorug01G0180300 Rorug01G0180400 Rorug01G0189000 Rorug01G0189100 Rorug01G0190500 Rorug01G0204800 Rorug05G0177200 Rorug05G0210300 Rorug05G0210300 Rorug05G0210300 Rorug05G0215400 Rorug05G0215400 Rorug05G0215400 Rorug05G0215400 Rorug05G0215500 Rorug05G0215600 Rorug05G0215800 Rorug05G0215900 Rorug05G0215900 Rorug05G0216000 Rorug05G0216200 Rorug05G0216300 Rorug05G0221900 Rorug07G0276700
rosa_samantha Rh1BG028400 Rh1BG033500 Rh1BG065100 Rh1BG073100 Rh1BG073200 Rh1BG117000 Rh1BG164000 Rh1BG164200 Rh1BG172100 Rh1BG173900 Rh1BG174100 Rh1BG188400 Rh1CG036000 Rh1CG036500 Rh1CG089900 Rh1CG140200 Rh1CG164700 Rh1CG182600 Rh1CG182900 Rh1CG183400 Rh1CG191300 Rh1CG192000 Rh1CG207700 Rh1DG033800 Rh1DG033900 Rh1DG096000 Rh5AG299900 Rh5AG304500 Rh5AG307100 Rh5AG307500 Rh5CG301600 Rh5CG329800 Rh5CG333800 Rh5DG311400 Rh5DG316300 Rh5DG316400 Rh5DG316700 Rh5DG316800 Rh5DG316900 Rh5DG326100 Rh7AG431900 Rh7CG451000
rosa_wichuraiana Rw0G007840 Rw0G009850 Rw0G013000 Rw0G015090 Rw0G021190 Rw1G002610 Rw1G004320 Rw1G006520 Rw1G007250 Rw1G012020 Rw1G013830 Rw1G014770 Rw1G016300 Rw1G016600 Rw1G016650 Rw1G017290 Rw1G017420 Rw1G017630 Rw1G017650 Rw1G017660 Rw1G017690 Rw1G017700 Rw1G018960 Rw5G024660 Rw5G024700 Rw5G024720 Rw5G024740 Rw5G024980 Rw5G027710 Rw5G027720 Rw5G027730 Rw5G027740 Rw5G027750 Rw5G028130 Rw5G028740 Rw5G028750 Rw5G028790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 2439
Acc16I TGCGCA 1 cut(s) 1226
Acc36I ACCTGC 1 cut(s) 1614
Acc65I GGTACC 1 cut(s) 2967
AccB1I GGYRCC 1 cut(s) 2967
AccB7I CCANNNNNTGG 1 cut(s) 2906
AccBSI CCGCTC 1 cut(s) 2965
AccI GTMKAC 3 cut(s) 664, 2125, 2328
AccII CGCG 1 cut(s) 519
AccIII TCCGGA 2 cut(s) 2599, 2691
AciI CCGC 5 cut(s) 1483, 2297, 2580, 2756, 2965
AclI AACGTT 1 cut(s) 1027
AclWI GGATC 1 cut(s) 314
AcoI YGGCCR 2 cut(s) 2522, 2839
AcuI CTGAAG 1 cut(s) 2825
AcyI GRCGYC 1 cut(s) 2826
AfaI GTAC 8 cut(s) 992, 1242, 1296, 1453, 1984, 2098, 2650, 2969
AfeI AGCGCT 1 cut(s) 1735
AfiI CCNNNNNNNGG 8 cut(s) 185, 271, 1069, 1263, 1589, 2000, 2606, 2906
AflII CTTAAG 1 cut(s) 2957
AflIII ACRYGT 2 cut(s) 467, 1410
AhlI ACTAGT 2 cut(s) 2093, 2099
AjiI CACGTC 2 cut(s) 470, 647
AjnI CCWGG 1 cut(s) 1909
AjuI GAANNNNNNNTTGG 2 cut(s) 2193, 2225
Alw21I GWGCWC 2 cut(s) 490, 640
Alw26I GTCTC 9 cut(s) 146, 476, 725, 1139, 1272, 2689, 2693, 2713, 2807
Alw44I GTGCAC 1 cut(s) 636
AlwI GGATC 1 cut(s) 314
Ama87I CYCGRG 1 cut(s) 2789
Aor13HI TCCGGA 2 cut(s) 2599, 2691
Aor51HI AGCGCT 1 cut(s) 1735
AoxI GGCC 3 cut(s) 1648, 2522, 2839
ApaLI GTGCAC 1 cut(s) 636
ApeKI GCWGC 3 cut(s) 1731, 1846, 2753
ArsI GACNNNNNNTTYG 2 cut(s) 1751, 1783
AseI ATTAAT 1 cut(s) 2343
Asp700I GAANNNNTTC 2 cut(s) 407, 2595
Asp718I GGTACC 1 cut(s) 2967
AspLEI GCGC 4 cut(s) 1227, 1736, 2887, 2997
AspS9I GGNCC 1 cut(s) 1603
AsuHPI GGTGA 9 cut(s) 325, 551, 1119, 1190, 1850, 2057, 2093, 2228, 2692
AvaI CYCGRG 1 cut(s) 2789
AvaII GGWCC 1 cut(s) 1603
AxyI CCTNAGG 2 cut(s) 302, 744
BaeGI GKGCMC 1 cut(s) 640
BaeI ACNNNNGTAYC 2 cut(s) 2959, 2992
BalI TGGCCA 1 cut(s) 2841
BanI GGYRCC 1 cut(s) 2967
BbsI GAAGAC 2 cut(s) 93, 683
Bbv12I GWGCWC 2 cut(s) 490, 640
BbvI GCAGC 3 cut(s) 1743, 1858, 2740
BccI CCATC 7 cut(s) 570, 823, 1721, 2450, 2557, 2850, 3023
BceAI ACGGC 2 cut(s) 2101, 2839
BcgI CGANNNNNNTGC 2 cut(s) 2515, 2549
BciT130I CCWGG 1 cut(s) 1911
BciVI GTATCC 1 cut(s) 38
BclI TGATCA 1 cut(s) 1530
BcoDI GTCTC 9 cut(s) 146, 476, 725, 1139, 1272, 2689, 2693, 2713, 2807
BcuI ACTAGT 2 cut(s) 2093, 2099
BfaI CTAG 6 cut(s) 362, 2094, 2100, 2354, 2361, 2489
BfmI CTRYAG 2 cut(s) 1273, 1607
BfoI RGCGCY 1 cut(s) 1737
BfrI CTTAAG 1 cut(s) 2957
BfuAI ACCTGC 1 cut(s) 1614
BfuI GTATCC 1 cut(s) 38
BglII AGATCT 3 cut(s) 364, 2278, 2793
BisI GCNGC 3 cut(s) 1732, 1847, 2754
BlsI GCNGC 3 cut(s) 1733, 1848, 2755
BmcAI AGTACT 3 cut(s) 992, 1296, 2098
Bme1390I CCNGG 1 cut(s) 1911
Bme18I GGWCC 1 cut(s) 1603
BmeT110I CYCGRG 1 cut(s) 2789
BmgBI CACGTC 2 cut(s) 470, 647
BmgT120I GGNCC 1 cut(s) 1603
BmiI GGNNCC 1 cut(s) 2969
BmrFI CCNGG 1 cut(s) 1911
BmrI ACTGGG 1 cut(s) 214
BmsI GCATC 4 cut(s) 1262, 1552, 1566, 2304
BmuI ACTGGG 1 cut(s) 214
BpiI GAAGAC 2 cut(s) 93, 683
BplI GAGNNNNNCTC 2 cut(s) 1132, 1164
BpmI CTGGAG 2 cut(s) 504, 1113
BpuEI CTTGAG 7 cut(s) 839, 994, 1217, 1558, 1733, 1862, 2456
Bsa29I ATCGAT 1 cut(s) 3027
BsaAI YACGTR 1 cut(s) 536
BsaHI GRCGYC 1 cut(s) 2826
BsaI GGTCTC 3 cut(s) 725, 2693, 2807
BsaJI CCNNGG 3 cut(s) 696, 937, 2951
BsaWI WCCGGW 3 cut(s) 2599, 2691, 2889
BsaXI ACNNNNNCTCC 2 cut(s) 2750, 2780
Bsc4I CCNNNNNNNGG 8 cut(s) 185, 271, 1069, 1263, 1589, 2000, 2606, 2906
Bse1I ACTGG 5 cut(s) 160, 220, 451, 2484, 3057
Bse21I CCTNAGG 2 cut(s) 302, 744
Bse3DI GCAATG 2 cut(s) 1988, 2514
BseAI TCCGGA 2 cut(s) 2599, 2691
BseBI CCWGG 1 cut(s) 1911
BseCI ATCGAT 1 cut(s) 3027
BseDI CCNNGG 3 cut(s) 696, 937, 2951
BseGI GGATG 4 cut(s) 261, 1253, 1732, 3009
BseLI CCNNNNNNNGG 8 cut(s) 185, 271, 1069, 1263, 1589, 2000, 2606, 2906
BseMI GCAATG 2 cut(s) 1988, 2514
BseMII CTCAG 3 cut(s) 570, 735, 2032
BseNI ACTGG 5 cut(s) 160, 220, 451, 2484, 3057
BseRI GAGGAG 2 cut(s) 125, 809
BseSI GKGCMC 1 cut(s) 640
BseXI GCAGC 3 cut(s) 1743, 1858, 2740
BseYI CCCAGC 1 cut(s) 2771
Bsh1236I CGCG 1 cut(s) 519
BshFI GGCC 3 cut(s) 1650, 2524, 2841
BshNI GGYRCC 1 cut(s) 2967
BshVI ATCGAT 1 cut(s) 3027
BsiHKAI GWGCWC 2 cut(s) 490, 640
BsiHKCI CYCGRG 1 cut(s) 2789
BsiSI CCGG 3 cut(s) 2600, 2692, 2890
BslFI GGGAC 6 cut(s) 313, 1279, 1536, 1772, 2016, 2531
BslI CCNNNNNNNGG 8 cut(s) 185, 271, 1069, 1263, 1589, 2000, 2606, 2906
BsmAI GTCTC 9 cut(s) 146, 476, 725, 1139, 1272, 2689, 2693, 2713, 2807
BsmBI CGTCTC 1 cut(s) 476
BsmFI GGGAC 6 cut(s) 313, 1279, 1536, 1772, 2016, 2531
BsmI GAATGC 1 cut(s) 937
BsnI GGCC 3 cut(s) 1650, 2524, 2841
Bso31I GGTCTC 3 cut(s) 725, 2693, 2807
BsoBI CYCGRG 1 cut(s) 2789
Bsp1286I GDGCHC 2 cut(s) 490, 640
Bsp13I TCCGGA 2 cut(s) 2599, 2691
Bsp143I GATC 8 cut(s) 306, 364, 501, 1000, 1530, 2278, 2793, 3024
BspACI CCGC 5 cut(s) 1483, 2297, 2580, 2756, 2965
BspANI GGCC 3 cut(s) 1650, 2524, 2841
BspCNI CTCAG 3 cut(s) 571, 736, 2031
BspDI ATCGAT 1 cut(s) 3027
BspEI TCCGGA 2 cut(s) 2599, 2691
BspFNI CGCG 1 cut(s) 519
BspLI GGNNCC 1 cut(s) 2969
BspMAI CTGCAG 1 cut(s) 1611
BspMI ACCTGC 1 cut(s) 1614
BspPI GGATC 1 cut(s) 314
BspT107I GGYRCC 1 cut(s) 2967
BspTI CTTAAG 1 cut(s) 2957
BspTNI GGTCTC 3 cut(s) 725, 2693, 2807
BsrBI CCGCTC 1 cut(s) 2965
BsrDI GCAATG 2 cut(s) 1988, 2514
BsrI ACTGG 5 cut(s) 160, 220, 451, 2484, 3057
BssECI CCNNGG 3 cut(s) 696, 937, 2951
BssMI GATC 8 cut(s) 306, 364, 501, 1000, 1530, 2278, 2793, 3024
BssNI GRCGYC 1 cut(s) 2826
BssT1I CCWWGG 3 cut(s) 696, 937, 2951
Bst2UI CCWGG 1 cut(s) 1911
Bst4CI ACNGT 9 cut(s) 69, 689, 875, 1178, 1350, 2130, 2306, 2399, 2653
Bst6I CTCTTC 6 cut(s) 7, 97, 981, 1236, 2859, 2928
BstACI GRCGYC 1 cut(s) 2826
BstAFI CTTAAG 1 cut(s) 2957
BstAPI GCANNNNNTGC 1 cut(s) 2941
BstBAI YACGTR 1 cut(s) 536
BstC8I GCNNGC 6 cut(s) 346, 640, 1470, 2469, 2897, 2933
BstDEI CTNAG 6 cut(s) 302, 337, 579, 744, 1397, 2018
BstENI CCTNNNNNAGG 1 cut(s) 1067
BstF5I GGATG 4 cut(s) 261, 1253, 1732, 3009
BstFNI CGCG 1 cut(s) 519
BstH2I RGCGCY 1 cut(s) 1737
BstHHI GCGC 4 cut(s) 1227, 1736, 2887, 2997
BstKTI GATC 8 cut(s) 309, 367, 504, 1003, 1533, 2281, 2796, 3027
BstMAI GTCTC 9 cut(s) 146, 476, 725, 1139, 1272, 2689, 2693, 2713, 2807
BstMBI GATC 8 cut(s) 306, 364, 501, 1000, 1530, 2278, 2793, 3024
BstMWI GCNNNNNNNGC 5 cut(s) 1672, 1742, 1846, 2941, 2962
BstNI CCWGG 1 cut(s) 1911
BstNSI RCATGY 4 cut(s) 614, 1414, 2471, 2505
BstSCI CCNGG 1 cut(s) 1909
BstSFI CTRYAG 2 cut(s) 1273, 1607
BstSLI GKGCMC 1 cut(s) 640
BstUI CGCG 1 cut(s) 519
BstV1I GCAGC 3 cut(s) 1743, 1858, 2740
BstV2I GAAGAC 2 cut(s) 93, 683
BstX2I RGATCY 4 cut(s) 306, 364, 2278, 2793
BstXI CCANNNNNNTGG 1 cut(s) 822
BstYI RGATCY 4 cut(s) 306, 364, 2278, 2793
Bsu15I ATCGAT 1 cut(s) 3027
Bsu36I CCTNAGG 2 cut(s) 302, 744
BsuI GTATCC 1 cut(s) 38
BsuRI GGCC 3 cut(s) 1650, 2524, 2841
BsuTUI ATCGAT 1 cut(s) 3027
BtgZI GCGATG 1 cut(s) 534
BtrI CACGTC 2 cut(s) 470, 647
BtsCI GGATG 4 cut(s) 261, 1253, 1732, 3009
BtsI GCAGTG 1 cut(s) 2875
BtsIMutI CAGTG 2 cut(s) 1346, 2875
BveI ACCTGC 1 cut(s) 1614
Cac8I GCNNGC 6 cut(s) 346, 640, 1470, 2469, 2897, 2933
CfoI GCGC 4 cut(s) 1227, 1736, 2887, 2997
Cfr13I GGNCC 1 cut(s) 1603
ClaI ATCGAT 1 cut(s) 3027
CseI GACGC 2 cut(s) 796, 2815
Csp6I GTAC 8 cut(s) 991, 1241, 1295, 1452, 1983, 2097, 2649, 2968
CviQI GTAC 8 cut(s) 991, 1241, 1295, 1452, 1983, 2097, 2649, 2968
DdeI CTNAG 6 cut(s) 302, 337, 579, 744, 1397, 2018
DpnI GATC 8 cut(s) 308, 366, 503, 1002, 1532, 2280, 2795, 3026
DpnII GATC 8 cut(s) 306, 364, 501, 1000, 1530, 2278, 2793, 3024
DraI TTTAAA 1 cut(s) 2136
DrdI GACNNNNNNGTC 1 cut(s) 2439
DseDI GACNNNNNNGTC 1 cut(s) 2439
EaeI YGGCCR 2 cut(s) 2522, 2839
Eam1104I CTCTTC 6 cut(s) 7, 97, 981, 1236, 2859, 2928
EarI CTCTTC 6 cut(s) 7, 97, 981, 1236, 2859, 2928
Eco130I CCWWGG 3 cut(s) 696, 937, 2951
Eco31I GGTCTC 3 cut(s) 725, 2693, 2807
Eco32I GATATC 1 cut(s) 298
Eco47I GGWCC 1 cut(s) 1603
Eco47III AGCGCT 1 cut(s) 1735
Eco57I CTGAAG 1 cut(s) 2825
Eco81I CCTNAGG 2 cut(s) 302, 744
Eco88I CYCGRG 1 cut(s) 2789
EcoNI CCTNNNNNAGG 1 cut(s) 1067
EcoO109I RGGNCCY 1 cut(s) 1603
EcoRI GAATTC 2 cut(s) 458, 2069
EcoRII CCWGG 1 cut(s) 1909
EcoRV GATATC 1 cut(s) 298
EcoT14I CCWWGG 3 cut(s) 696, 937, 2951
EcoT22I ATGCAT 2 cut(s) 1059, 1255
ErhI CCWWGG 3 cut(s) 696, 937, 2951
Esp3I CGTCTC 1 cut(s) 476
FaqI GGGAC 6 cut(s) 313, 1279, 1536, 1772, 2016, 2531
FauI CCCGC 1 cut(s) 1476
FauNDI CATATG 1 cut(s) 1587
FbaI TGATCA 1 cut(s) 1530
FblI GTMKAC 3 cut(s) 664, 2125, 2328
Fnu4HI GCNGC 3 cut(s) 1732, 1847, 2754
FokI GGATG 4 cut(s) 248, 1240, 1739, 2996
Fsp4HI GCNGC 3 cut(s) 1732, 1847, 2754
FspBI CTAG 6 cut(s) 362, 2094, 2100, 2354, 2361, 2489
FspI TGCGCA 1 cut(s) 1226
GlaI GCGC 4 cut(s) 1226, 1735, 2886, 2996
GluI GCNGC 3 cut(s) 1732, 1847, 2754
GsaI CCCAGC 1 cut(s) 2775
GsuI CTGGAG 2 cut(s) 504, 1113
HaeII RGCGCY 1 cut(s) 1737
HaeIII GGCC 3 cut(s) 1650, 2524, 2841
HapII CCGG 3 cut(s) 2600, 2692, 2890
HgaI GACGC 2 cut(s) 796, 2815
HhaI GCGC 4 cut(s) 1227, 1736, 2887, 2997
Hin1I GRCGYC 1 cut(s) 2826
Hin6I GCGC 4 cut(s) 1225, 1734, 2885, 2995
HinP1I GCGC 4 cut(s) 1225, 1734, 2885, 2995
HincII GTYRAC 3 cut(s) 72, 2302, 2329
HindII GTYRAC 3 cut(s) 72, 2302, 2329
HindIII AAGCTT 2 cut(s) 342, 1673
HpaII CCGG 3 cut(s) 2600, 2692, 2890
HphI GGTGA 9 cut(s) 325, 551, 1119, 1190, 1850, 2057, 2093, 2228, 2692
Hpy166II GTNNAC 7 cut(s) 72, 638, 665, 2126, 2302, 2329, 2432
Hpy8I GTNNAC 7 cut(s) 72, 638, 665, 2126, 2302, 2329, 2432
HpyAV CCTTC 8 cut(s) 113, 625, 1640, 2222, 2417, 2597, 2800, 3025
HpyCH4III ACNGT 9 cut(s) 69, 689, 875, 1178, 1350, 2130, 2306, 2399, 2653
HpyCH4IV ACGT 4 cut(s) 469, 535, 646, 1027
HpyF10VI GCNNNNNNNGC 5 cut(s) 1672, 1742, 1846, 2941, 2962
HpyF3I CTNAG 6 cut(s) 302, 337, 579, 744, 1397, 2018
HpySE526I ACGT 4 cut(s) 469, 535, 646, 1027
Hsp92I GRCGYC 1 cut(s) 2826
HspAI GCGC 4 cut(s) 1225, 1734, 2885, 2995
Kpn2I TCCGGA 2 cut(s) 2599, 2691
KpnI GGTACC 1 cut(s) 2971
Ksp22I TGATCA 1 cut(s) 1530
Kzo9I GATC 8 cut(s) 306, 364, 501, 1000, 1530, 2278, 2793, 3024
LmnI GCTCC 6 cut(s) 4, 485, 1854, 2254, 2892, 2962
Lsp1109I GCAGC 3 cut(s) 1743, 1858, 2740
LweI GCATC 4 cut(s) 1262, 1552, 1566, 2304
MaeI CTAG 6 cut(s) 362, 2094, 2100, 2354, 2361, 2489
MaeII ACGT 4 cut(s) 469, 535, 646, 1027
MaeIII GTNAC 9 cut(s) 508, 708, 770, 1434, 1771, 2081, 2179, 2216, 2399
MalI GATC 8 cut(s) 308, 366, 503, 1002, 1532, 2280, 2795, 3026
MbiI CCGCTC 1 cut(s) 2965
MboI GATC 8 cut(s) 306, 364, 501, 1000, 1530, 2278, 2793, 3024
MfeI CAATTG 2 cut(s) 1803, 2861
MflI RGATCY 4 cut(s) 306, 364, 2278, 2793
MhlI GDGCHC 2 cut(s) 490, 640
MlsI TGGCCA 1 cut(s) 2841
MluNI TGGCCA 1 cut(s) 2841
MlyI GAGTC 7 cut(s) 83, 252, 335, 1141, 2351, 2358, 2691
MmeI TCCRAC 6 cut(s) 435, 1048, 1876, 2191, 2468, 2486
Mox20I TGGCCA 1 cut(s) 2841
Mph1103I ATGCAT 2 cut(s) 1059, 1255
MroI TCCGGA 2 cut(s) 2599, 2691
MroXI GAANNNNTTC 2 cut(s) 407, 2595
MscI TGGCCA 1 cut(s) 2841
MslI CAYNNNNRTG 2 cut(s) 572, 2119
Msp20I TGGCCA 1 cut(s) 2841
MspCI CTTAAG 1 cut(s) 2957
MspI CCGG 3 cut(s) 2600, 2692, 2890
MspR9I CCNGG 1 cut(s) 1911
MunI CAATTG 2 cut(s) 1803, 2861
Mva1269I GAATGC 1 cut(s) 937
MvaI CCWGG 1 cut(s) 1911
MvnI CGCG 1 cut(s) 519
MwoI GCNNNNNNNGC 5 cut(s) 1672, 1742, 1846, 2941, 2962
NdeI CATATG 1 cut(s) 1587
NdeII GATC 8 cut(s) 306, 364, 501, 1000, 1530, 2278, 2793, 3024
NlaIV GGNNCC 1 cut(s) 2969
NmuCI GTSAC 6 cut(s) 508, 708, 770, 2081, 2216, 2399
NsbI TGCGCA 1 cut(s) 1226
NsiI ATGCAT 2 cut(s) 1059, 1255
NspI RCATGY 4 cut(s) 614, 1414, 2471, 2505
PaeI GCATGC 1 cut(s) 2471
PaeR7I CTCGAG 1 cut(s) 2789
PciI ACATGT 1 cut(s) 1410
PctI GAATGC 1 cut(s) 937
PdmI GAANNNNTTC 2 cut(s) 407, 2595
PfeI GAWTC 8 cut(s) 123, 198, 408, 1124, 1373, 1937, 2610, 2800
PflFI GACNNNGTC 1 cut(s) 2825
PflMI CCANNNNNTGG 1 cut(s) 2906
PkrI GCNGC 3 cut(s) 1733, 1848, 2755
PleI GAGTC 7 cut(s) 83, 251, 334, 1141, 2351, 2358, 2691
PpsI GAGTC 7 cut(s) 83, 251, 334, 1141, 2351, 2358, 2691
Ppu21I YACGTR 1 cut(s) 536
PpuMI RGGWCCY 1 cut(s) 1603
PscI ACATGT 1 cut(s) 1410
PshBI ATTAAT 1 cut(s) 2343
Psp1406I AACGTT 1 cut(s) 1027
Psp5II RGGWCCY 1 cut(s) 1603
Psp6I CCWGG 1 cut(s) 1909
PspFI CCCAGC 1 cut(s) 2771
PspGI CCWGG 1 cut(s) 1909
PspN4I GGNNCC 1 cut(s) 2969
PspPI GGNCC 1 cut(s) 1603
PspPPI RGGWCCY 1 cut(s) 1603
PstI CTGCAG 1 cut(s) 1611
PsuI RGATCY 4 cut(s) 306, 364, 2278, 2793
PsyI GACNNNGTC 1 cut(s) 2825
RsaI GTAC 8 cut(s) 992, 1242, 1296, 1453, 1984, 2098, 2650, 2969
RsaNI GTAC 8 cut(s) 991, 1241, 1295, 1452, 1983, 2097, 2649, 2968
RseI CAYNNNNRTG 2 cut(s) 572, 2119
SalI GTCGAC 1 cut(s) 2327
SatI GCNGC 3 cut(s) 1732, 1847, 2754
Sau3AI GATC 8 cut(s) 306, 364, 501, 1000, 1530, 2278, 2793, 3024
Sau96I GGNCC 1 cut(s) 1603
ScaI AGTACT 3 cut(s) 992, 1296, 2098
SchI GAGTC 7 cut(s) 83, 252, 335, 1141, 2351, 2358, 2691
ScrFI CCNGG 1 cut(s) 1911
SduI GDGCHC 2 cut(s) 490, 640
SfaNI GCATC 4 cut(s) 1262, 1552, 1566, 2304
SfcI CTRYAG 2 cut(s) 1273, 1607
Sfr274I CTCGAG 1 cut(s) 2789
SinI GGWCC 1 cut(s) 1603
SlaI CTCGAG 1 cut(s) 2789
SmiMI CAYNNNNRTG 2 cut(s) 572, 2119
SmlI CTYRAG 9 cut(s) 854, 1009, 1196, 1537, 1712, 1841, 2435, 2789, 2957
SmoI CTYRAG 9 cut(s) 854, 1009, 1196, 1537, 1712, 1841, 2435, 2789, 2957
SpeI ACTAGT 2 cut(s) 2093, 2099
SphI GCATGC 1 cut(s) 2471
SsiI CCGC 5 cut(s) 1483, 2297, 2580, 2756, 2965
SspI AATATT 4 cut(s) 1220, 1925, 2408, 2744
SspMI CTAG 6 cut(s) 362, 2094, 2100, 2354, 2361, 2489
StyD4I CCNGG 1 cut(s) 1909
StyI CCWWGG 3 cut(s) 696, 937, 2951
TaaI ACNGT 9 cut(s) 69, 689, 875, 1178, 1350, 2130, 2306, 2399, 2653
TaiI ACGT 4 cut(s) 472, 538, 649, 1030
TaqI TCGA 9 cut(s) 878, 898, 1376, 1492, 2142, 2328, 2454, 2790, 3027
TatI WGTACW 5 cut(s) 990, 1294, 1451, 2096, 2648
TfiI GAWTC 8 cut(s) 123, 198, 408, 1124, 1373, 1937, 2610, 2800
TscAI CASTG 2 cut(s) 1353, 2882
TseFI GTSAC 6 cut(s) 508, 708, 770, 2081, 2216, 2399
TseI GCWGC 3 cut(s) 1731, 1846, 2753
Tsp45I GTSAC 6 cut(s) 508, 708, 770, 2081, 2216, 2399
TspGWI ACGGA 1 cut(s) 2362
TspRI CASTG 2 cut(s) 1353, 2882
Tth111I GACNNNGTC 1 cut(s) 2825
Van91I CCANNNNNTGG 1 cut(s) 2906
Vha464I CTTAAG 1 cut(s) 2957
VneI GTGCAC 1 cut(s) 636
VpaK11BI GGWCC 1 cut(s) 1603
VspI ATTAAT 1 cut(s) 2343
XagI CCTNNNNNAGG 1 cut(s) 1067
XbaI TCTAGA 2 cut(s) 2360, 2488
XceI RCATGY 4 cut(s) 614, 1414, 2471, 2505
XhoI CTCGAG 1 cut(s) 2789
XmiI GTMKAC 3 cut(s) 664, 2125, 2328
XmnI GAANNNNTTC 2 cut(s) 407, 2595
XspI CTAG 6 cut(s) 362, 2094, 2100, 2354, 2361, 2489
ZrmI AGTACT 3 cut(s) 992, 1296, 2098
Zsp2I ATGCAT 2 cut(s) 1059, 1255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.