Rorug05G0215900

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
22226151 .. 22230817
4667 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0215900.1

Sequence Viewer

Length: 1353 bp
ATGGCGAGGCGGGTTCACACGACGGAGGTGGGCTGCATAGCGTGCGAGGAGCTCGGCGAGCTCGGCGCCGGAAAGGAGGGGTGGCTCGTGGACACTCCGAACCTCCTCTGCGCCATCGACACTCACTGCATCGCGCTCGCGAACCGGTCGGTGATTGTGGTACTCGGGTGGGCCGAGCCCGACGGGAACCGGGTCAAGATCCGACCCGAATTGTCGCCGATTGAGGCTGAGTTCGTGACGGCGATTGAGTGGCTGGTGTTTGATGAGATGCGGGTCGTTGTGGCCGGGACTTCTGCTGGTTATCTCCTCTTTTACTCTTTGGCTGGTCATTTGATCCATAAACAGATGGTATATCCAGCTAGGATCATACGGTTGAGGGTCCGAGGAACGAAGAGAGATTTGAGCCACGATACATCCTCGGAGGAGGTTTGTGTTGTTATGCCAGGCATTCTCGCCCGTTTTGATGGTTCGGATATTCAGAATAAGCTGCAGCAGTGGTTTCAAGAAACACAGTCTCATTTTTGGGATCGAAATCGGAGGTCTGATGATTTGGGAAATTCTTATGGAAAATTACCTTACCAGTTATGGAGTGTCAGCAAGTATGGTAGTTGTGCTGATGCAGCAATCACTGGCATAATGCCTCCACCACTGATGGAAATCCAGTCAAGTGAACATTATTTCTGTGGAATCACTGTTGGAGAGGATGCGGTAATTTCAGCCTTCAGACTTTCGGAAGATAAAAATAGATCTTTCGTGGGAGCTATCTTGTCTAAAGTTGTGCCTGCAACATTTTCAACAATAGCCTCATTCTCAAAACTGATATGGCGAAGTGAACAGACTTCACCTAAGAAATTAGATGAGACACCTCAACCATTTGCTCGAGCTTCTCCATTGACATGTTTGAAGGACTTCCCGAGAAAGGGTGAGAAGCTTACCTTATCACCTAGTGGCACATTGGCTGCAATTACAGATTCACTTGGTCGCATATTGCTTTTAGACACTCAAGCACTTGTCATAGTGCGACTGTGGAAGGGATATCGGGATGCTAGCTGCCTATTCACGGAGATGCTGGTCAATAAAAACACTGCAGCTTCTAGTTCCCGTTATTATGAACCTACCAAGAGTGATTACTGCCTGTGTTTGGTCATTCATGCCCCTAGAAAAGGAATTATTGAGATTTGGCAGATGAGAACTGGACCAAGGCTTCGAAGTTTTGTGTGTGCCAAAGGTAGCAAGATACTGCAACCTACTTACAGATTTGGATCGTCAATAGCCTCTCCTTATGTTCCTTTGGAGGTTTTCTTGTTGAACGGGGACTCTGGTCAGATATCAGTTTTAAATCGAACTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

450

Amino Acids

50.05

Weight (kDa)

8.52

Isoelectric Point (pI)

49.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RAB3GAP2_N PF14655 28 - 414 9.3e-122 Rab3 GTPase-activating protein regulatory subunit N-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000035)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G14470 AT3G14470
fragaria_vesca FvH4_1g01220 FvH4_1g01230 FvH4_3g24551 FvH4_3g24552 FvH4_4g29310 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_4g29930 FvH4_6g39860 FvH4_6g39861 FvH4_7g11380
malus_domestica MD00G1072900.v1.1 MD00G1073100.v1.1 MD00G1120600.v1.1 MD00G1120900.v1.1 MD00G1121000.v1.1 MD00G1121200.v1.1 MD00G1152300.v1.1 MD00G1203600.v1.1 MD00G1203700.v1.1 MD02G1250900.v1.1 MD02G1251900.v1.1 MD02G1252800.v1.1 MD02G1277100.v1.1 MD02G1277200.v1.1 MD02G1277400.v1.1 MD02G1286100.v1.1 MD02G1286200.v1.1 MD02G1286900.v1.1 MD03G1006200.v1.1 MD03G1015300.v1.1 MD03G1015500.v1.1 MD03G1015900.v1.1 MD03G1016000.v1.1 MD03G1024900.v1.1 MD03G1025000.v1.1 MD03G1025500.v1.1 MD03G1026000.v1.1 MD03G1026500.v1.1 MD03G1031800.v1.1 MD03G1072200.v1.1 MD07G1028000.v1.1 MD07G1028300.v1.1 MD07G1029400.v1.1 MD07G1029500.v1.1 MD07G1040300.v1.1 MD07G1044500.v1.1 MD07G1045100.v1.1 MD07G1045500.v1.1 MD07G1050700.v1.1 MD07G1050900.v1.1 MD07G1055800.v1.1 MD07G1056200.v1.1 MD07G1056600.v1.1 MD07G1057100.v1.1 MD07G1057200.v1.1 MD08G1056500.v1.1 MD08G1056600.v1.1 MD08G1056700.v1.1 MD08G1056800.v1.1 MD08G1128800.v1.1 MD08G1129500.v1.1 MD08G1130000.v1.1 MD11G1066700.v1.1 MD11G1066800.v1.1 MD11G1066900.v1.1 MD11G1067000.v1.1 MD11G1067500.v1.1 MD11G1069800.v1.1 MD11G1070400.v1.1 MD11G1071100.v1.1 MD11G1071200.v1.1 MD11G1077200.v1.1 MD11G1077700.v1.1 MD11G1077900.v1.1 MD11G1078100.v1.1 MD11G1078300.v1.1 MD11G1078500.v1.1 MD11G1135200.v1.1 MD11G1135400.v1.1 MD11G1152900.v1.1 MD11G1153000.v1.1 MD17G1056800.v1.1
prunus_persica Prupe.2G037800_v2.0.a1 Prupe.2G037800_v2.0.a1 Prupe.2G037800_v2.0.a1 Prupe.2G037800_v2.0.a1 Prupe.2G040500_v2.0.a1 Prupe.2G040700_v2.0.a1 Prupe.2G043000_v2.0.a1 Prupe.2G043100_v2.0.a1 Prupe.2G043200_v2.0.a1 Prupe.2G046000_v2.0.a1 Prupe.2G046300_v2.0.a1 Prupe.2G046400_v2.0.a1 Prupe.2G046400_v2.0.a1 Prupe.2G046700_v2.0.a1 Prupe.2G046900_v2.0.a1 Prupe.2G051100_v2.0.a1 Prupe.2G052200_v2.0.a1 Prupe.2G053600_v2.0.a1 Prupe.2G053600_v2.0.a1 Prupe.2G053600_v2.0.a1 Prupe.2G053600_v2.0.a1 Prupe.2G053700_v2.0.a1 Prupe.2G053800_v2.0.a1 Prupe.2G053900_v2.0.a1 Prupe.2G054000_v2.0.a1 Prupe.2G054100_v2.0.a1 Prupe.2G054200_v2.0.a1 Prupe.2G054300_v2.0.a1 Prupe.2G054300_v2.0.a1 Prupe.2G054300_v2.0.a1 Prupe.2G054300_v2.0.a1 Prupe.2G054500_v2.0.a1 Prupe.2G054700_v2.0.a1 Prupe.4G286000_v2.0.a1 Prupe.4G286000_v2.0.a1 Prupe.4G286000_v2.0.a1 Prupe.6G129800_v2.0.a1 Prupe.6G130000_v2.0.a1 Prupe.6G130000_v2.0.a1
pyrus_communis pycom02g23740 pycom02g23750 pycom02g24320 pycom03g00620 pycom03g01280 pycom03g01320 pycom03g01350 pycom03g01360 pycom03g01370 pycom03g01380 pycom03g01390 pycom03g02160 pycom03g02170 pycom03g05850 pycom03g09810 pycom07g02120 pycom07g02790 pycom07g02800 pycom07g03210 pycom07g03660 pycom07g03670 pycom07g04350 pycom08g10780 pycom08g10840 pycom08g10910 pycom11g05650 pycom11g05670 pycom11g05800 pycom11g05880 pycom11g05890 pycom11g05940 pycom11g06490 pycom11g06500 pycom11g06520 pycom11g06560 pycom11g06570 pycom11g11230 pycom11g13650 pycom17g05700
rosa_chinensis RchiOBHm_Chr1g0318341 RchiOBHm_Chr1g0318901 RchiOBHm_Chr1g0318931 RchiOBHm_Chr1g0327301 RchiOBHm_Chr1g0328491 RchiOBHm_Chr1g0336761 RchiOBHm_Chr1g0336831 RchiOBHm_Chr1g0340721 RchiOBHm_Chr1g0342461 RchiOBHm_Chr1g0342471 RchiOBHm_Chr1g0342481 RchiOBHm_Chr1g0346131 RchiOBHm_Chr1g0346191 RchiOBHm_Chr1g0346211 RchiOBHm_Chr1g0346241 RchiOBHm_Chr1g0346261 RchiOBHm_Chr1g0346281 RchiOBHm_Chr1g0346461 RchiOBHm_Chr1g0346471 RchiOBHm_Chr1g0346481 RchiOBHm_Chr1g0346501 RchiOBHm_Chr1g0347691 RchiOBHm_Chr1g0347701 RchiOBHm_Chr1g0347751 RchiOBHm_Chr1g0347791 RchiOBHm_Chr1g0347971 RchiOBHm_Chr1g0349661 RchiOBHm_Chr1g0349741 RchiOBHm_Chr1g0357561 RchiOBHm_Chr3g0492601 RchiOBHm_Chr5g0039181 RchiOBHm_Chr5g0039231 RchiOBHm_Chr5g0039241 RchiOBHm_Chr5g0039251 RchiOBHm_Chr5g0039531 RchiOBHm_Chr5g0044001 RchiOBHm_Chr5g0044571 RchiOBHm_Chr5g0044611 RchiOBHm_Chr5g0044631 RchiOBHm_Chr5g0044641 RchiOBHm_Chr5g0044651 RchiOBHm_Chr5g0044661 RchiOBHm_Chr5g0044681 RchiOBHm_Chr5g0045221 RchiOBHm_Chr5g0045901 RchiOBHm_Chr5g0045991 RchiOBHm_Chr5g0046001 RchiOBHm_Chr5g0046011
rosa_laevigata RLG00000028715 RLG00000028718 RLG00000029034 RLG00000029926 RLG00000030516 RLG00000034285 RLG00000034288
rosa_multiflora Rmu_co7987576.1_g000001 Rmu_co8028038.1_g000001 Rmu_co8104858.1_g000001 Rmu_co8185828.1_g000001 Rmu_co8227651.1_g000001 Rmu_co8235061.1_g000001 Rmu_co8246845.1_g000001 Rmu_co8254315.1_g000001 Rmu_co8284899.1_g000001 Rmu_co8401461.1_g000001 Rmu_co8475625.1_g000001 Rmu_co8502681.1_g000001 Rmu_sc0000250.1_g000005 Rmu_sc0000492.1_g000001 Rmu_sc0000533.1_g000004 Rmu_sc0000795.1_g000114 Rmu_sc0000831.1_g000039 Rmu_sc0000907.1_g000014 Rmu_sc0000907.1_g000034 Rmu_sc0001035.1_g000007 Rmu_sc0001035.1_g000011 Rmu_sc0001035.1_g000012 Rmu_sc0001099.1_g000003 Rmu_sc0001157.1_g000008 Rmu_sc0001212.1_g000016 Rmu_sc0001212.1_g000017 Rmu_sc0001304.1_g000027 Rmu_sc0001304.1_g000033 Rmu_sc0001773.1_g000019 Rmu_sc0001836.1_g000069 Rmu_sc0001856.1_g000004 Rmu_sc0002286.1_g000003 Rmu_sc0002286.1_g000004 Rmu_sc0002286.1_g000005 Rmu_sc0002286.1_g000007 Rmu_sc0002286.1_g000015 Rmu_sc0002495.1_g000025 Rmu_sc0002545.1_g000008 Rmu_sc0002545.1_g000009 Rmu_sc0002662.1_g000009 Rmu_sc0003363.1_g000019 Rmu_sc0003363.1_g000022 Rmu_sc0003600.1_g000057 Rmu_sc0003809.1_g000036 Rmu_sc0003809.1_g000037 Rmu_sc0005008.1_g000026 Rmu_sc0005008.1_g000028 Rmu_sc0005028.1_g000001 Rmu_sc0005144.1_g000022 Rmu_sc0005167.1_g000004 Rmu_sc0005626.1_g000005 Rmu_sc0005626.1_g000018 Rmu_sc0006228.1_g000011 Rmu_sc0006609.1_g000007 Rmu_sc0006609.1_g000009 Rmu_sc0006609.1_g000015 Rmu_sc0006609.1_g000016 Rmu_sc0006609.1_g000017 Rmu_sc0006609.1_g000018 Rmu_sc0007060.1_g000003 Rmu_sc0007318.1_g000011 Rmu_sc0007992.1_g000002 Rmu_sc0009172.1_g000001 Rmu_sc0010151.1_g000010 Rmu_sc0010151.1_g000011 Rmu_sc0011778.1_g000001 Rmu_sc0011778.1_g000005 Rmu_sc0011778.1_g000009 Rmu_sc0012293.1_g000001 Rmu_sc0012293.1_g000002 Rmu_sc0016606.1_g000001 Rmu_sc0016836.1_g000001 Rmu_sc0021084.1_g000008 Rmu_sc0021449.1_g000001 Rmu_sc0026523.1_g000001 Rmu_sc0027133.1_g000003 Rmu_sc0038674.1_g000001 Rmu_ssc0000255.1_g000053 Rmu_ssc0000255.1_g000063 Rmu_ssc0000255.1_g000064 Rmu_ssc0000263.1_g000004 Rmu_ssc0000400.1_g000027
rosa_roxburghii Rroxscaffold_1G00035290 Rroxscaffold_1G00036350 Rroxscaffold_1G00036360 Rroxscaffold_1G00036400 Rroxscaffold_1G00036460 Rroxscaffold_1G00037000 Rroxscaffold_1G00040440 Rroxscaffold_1G00041890 Rroxscaffold_1G00041920 Rroxscaffold_4G00307460 Rroxscaffold_4G00307500 Rroxscaffold_4G00308500 Rroxscaffold_4G00308510 Rroxscaffold_4G00308770 Rroxscaffold_4G00313020 Rroxscaffold_4G00321580 Rroxscaffold_4G00323030 Rroxscaffold_4G00326850 Rroxscaffold_4G00328770 Rroxscaffold_4G00328780 Rroxscaffold_4G00329310 Rroxscaffold_5G00352110
rosa_rugosa Rorug01G0020700 Rorug01G0023000 Rorug01G0023100 Rorug01G0023200 Rorug01G0023300 Rorug01G0023400 Rorug01G0024500 Rorug01G0025100 Rorug01G0025200 Rorug01G0025400 Rorug01G0025400 Rorug01G0064700 Rorug01G0065300 Rorug01G0127600 Rorug01G0128000 Rorug01G0148000.1 Rorug01G0150500.1 Rorug01G0161600.1 Rorug01G0161800.1 Rorug01G0163600.1 Rorug01G0178300 Rorug01G0178500 Rorug01G0178700 Rorug01G0179900 Rorug01G0180200 Rorug01G0180300 Rorug01G0180400 Rorug01G0189000 Rorug01G0189100 Rorug01G0190500 Rorug01G0204800 Rorug05G0177200 Rorug05G0210300 Rorug05G0210300 Rorug05G0210300 Rorug05G0215400 Rorug05G0215400 Rorug05G0215400 Rorug05G0215400 Rorug05G0215500 Rorug05G0215600 Rorug05G0215800 Rorug05G0215900 Rorug05G0215900 Rorug05G0216000 Rorug05G0216200 Rorug05G0216300 Rorug05G0221900 Rorug07G0276700
rosa_samantha Rh1BG028400 Rh1BG033500 Rh1BG065100 Rh1BG073100 Rh1BG073200 Rh1BG117000 Rh1BG164000 Rh1BG164200 Rh1BG172100 Rh1BG173900 Rh1BG174100 Rh1BG188400 Rh1CG036000 Rh1CG036500 Rh1CG089900 Rh1CG140200 Rh1CG164700 Rh1CG182600 Rh1CG182900 Rh1CG183400 Rh1CG191300 Rh1CG192000 Rh1CG207700 Rh1DG033800 Rh1DG033900 Rh1DG096000 Rh5AG299900 Rh5AG304500 Rh5AG307100 Rh5AG307500 Rh5CG301600 Rh5CG329800 Rh5CG333800 Rh5DG311400 Rh5DG316300 Rh5DG316400 Rh5DG316700 Rh5DG316800 Rh5DG316900 Rh5DG326100 Rh7AG431900 Rh7CG451000
rosa_wichuraiana Rw0G007840 Rw0G009850 Rw0G013000 Rw0G015090 Rw0G021190 Rw1G002610 Rw1G004320 Rw1G006520 Rw1G007250 Rw1G012020 Rw1G013830 Rw1G014770 Rw1G016300 Rw1G016600 Rw1G016650 Rw1G017290 Rw1G017420 Rw1G017630 Rw1G017650 Rw1G017660 Rw1G017690 Rw1G017700 Rw1G018960 Rw5G024660 Rw5G024700 Rw5G024720 Rw5G024740 Rw5G024980 Rw5G027710 Rw5G027720 Rw5G027730 Rw5G027740 Rw5G027750 Rw5G028130 Rw5G028740 Rw5G028750 Rw5G028790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 65
AccII CGCG 2 cut(s) 134, 140
AciI CCGC 3 cut(s) 10, 271, 707
AclWI GGATC 5 cut(s) 193, 328, 371, 534, 1270
AcoI YGGCCR 1 cut(s) 282
AcsI RAATTY 1 cut(s) 556
AcuI CTGAAG 1 cut(s) 706
AcyI GRCGYC 1 cut(s) 66
AdeI CACNNNGTG 1 cut(s) 947
AfaI GTAC 1 cut(s) 162
AfiI CCNNNNNNNGG 5 cut(s) 919, 920, 1060, 1141, 1163
AflIII ACRYGT 1 cut(s) 896
AgeI ACCGGT 1 cut(s) 144
AgsI TTSAA 4 cut(s) 503, 795, 904, 1309
AjnI CCWGG 1 cut(s) 442
AluBI AGCT 9 cut(s) 52, 61, 359, 487, 761, 884, 931, 1050, 1091
AluI AGCT 9 cut(s) 52, 61, 359, 487, 761, 884, 931, 1050, 1091
Alw21I GWGCWC 2 cut(s) 54, 63
Alw26I GTCTC 2 cut(s) 519, 854
AlwI GGATC 5 cut(s) 193, 328, 371, 534, 1270
Ama87I CYCGRG 3 cut(s) 164, 879, 913
AoxI GGCC 2 cut(s) 171, 282
ApeKI GCWGC 7 cut(s) 33, 487, 490, 620, 959, 1050, 1088
ApoI RAATTY 1 cut(s) 556
ArsI GACNNNNNNTTYG 2 cut(s) 1188, 1220
AsiGI ACCGGT 1 cut(s) 144
Asp700I GAANNNNTTC 1 cut(s) 908
AspLEI GCGC 3 cut(s) 68, 113, 136
AspS9I GGNCC 3 cut(s) 171, 379, 1196
AsuC2I CCSGG 2 cut(s) 191, 286
AsuHPI GGTGA 4 cut(s) 163, 834, 933, 935
AsuII TTCGAA 1 cut(s) 1207
AsuNHI GCTAGC 1 cut(s) 1046
AvaI CYCGRG 3 cut(s) 164, 879, 913
AvaII GGWCC 2 cut(s) 379, 1196
BaeI ACNNNNGTAYC 2 cut(s) 152, 185
BanI GGYRCC 1 cut(s) 65
BanII GRGCYC 3 cut(s) 54, 63, 180
BauI CACGAG 1 cut(s) 86
Bbv12I GWGCWC 2 cut(s) 54, 63
BbvI GCAGC 7 cut(s) 20, 474, 502, 632, 946, 1037, 1100
BccI CCATC 4 cut(s) 122, 340, 458, 646
BceAI ACGGC 1 cut(s) 255
BcgI CGANNNNNNTGC 2 cut(s) 118, 152
BciT130I CCWGG 1 cut(s) 444
BcnI CCSGG 2 cut(s) 191, 286
BcoDI GTCTC 2 cut(s) 519, 854
BfaI CTAG 5 cut(s) 360, 945, 1047, 1095, 1158
BfmI CTRYAG 2 cut(s) 488, 1086
BfoI RGCGCY 1 cut(s) 69
BglII AGATCT 1 cut(s) 746
BisI GCNGC 7 cut(s) 34, 488, 491, 621, 960, 1051, 1089
BlsI GCNGC 7 cut(s) 35, 489, 492, 622, 961, 1052, 1090
Bme1390I CCNGG 3 cut(s) 191, 286, 444
Bme18I GGWCC 2 cut(s) 379, 1196
BmeT110I CYCGRG 3 cut(s) 164, 879, 913
BmgT120I GGNCC 3 cut(s) 171, 379, 1196
BmiI GGNNCC 3 cut(s) 67, 188, 380
BmrFI CCNGG 3 cut(s) 191, 286, 444
BmsI GCATC 6 cut(s) 138, 258, 607, 694, 1033, 1056
BmtI GCTAGC 1 cut(s) 1050
BoxI GACNNNNGTC 1 cut(s) 1320
Bpu14I TTCGAA 1 cut(s) 1207
BpuEI CTTGAG 1 cut(s) 987
BpuMI CCSGG 2 cut(s) 191, 286
BsaBI GATNNNNATC 3 cut(s) 531, 656, 1261
BsaHI GRCGYC 1 cut(s) 66
BsaJI CCNNGG 3 cut(s) 382, 417, 1199
BsaWI WCCGGW 1 cut(s) 144
Bsc4I CCNNNNNNNGG 5 cut(s) 919, 920, 1060, 1141, 1163
Bse118I RCCGGY 1 cut(s) 144
Bse1I ACTGG 4 cut(s) 580, 634, 661, 1198
Bse8I GATNNNNATC 3 cut(s) 531, 656, 1261
BseBI CCWGG 1 cut(s) 444
BseDI CCNNGG 3 cut(s) 382, 417, 1199
BseGI GGATG 3 cut(s) 413, 709, 1048
BseJI GATNNNNATC 3 cut(s) 531, 656, 1261
BseLI CCNNNNNNNGG 5 cut(s) 919, 920, 1060, 1141, 1163
BseMII CTCAG 1 cut(s) 219
BseNI ACTGG 4 cut(s) 580, 634, 661, 1198
BseRI GAGGAG 4 cut(s) 62, 95, 296, 437
BseXI GCAGC 7 cut(s) 20, 474, 502, 632, 946, 1037, 1100
Bsh1236I CGCG 2 cut(s) 134, 140
Bsh1285I CGRYCG 1 cut(s) 149
BshFI GGCC 2 cut(s) 173, 284
BshNI GGYRCC 1 cut(s) 65
BshTI ACCGGT 1 cut(s) 144
BsiEI CGRYCG 1 cut(s) 149
BsiHKAI GWGCWC 2 cut(s) 54, 63
BsiHKCI CYCGRG 3 cut(s) 164, 879, 913
BsiSI CCGG 4 cut(s) 69, 145, 190, 285
BslFI GGGAC 2 cut(s) 301, 1328
BslI CCNNNNNNNGG 5 cut(s) 919, 920, 1060, 1141, 1163
BsmAI GTCTC 2 cut(s) 519, 854
BsmFI GGGAC 2 cut(s) 301, 1328
BsmI GAATGC 1 cut(s) 447
BsnI GGCC 2 cut(s) 173, 284
BsoBI CYCGRG 3 cut(s) 164, 879, 913
Bsp119I TTCGAA 1 cut(s) 1207
Bsp1286I GDGCHC 3 cut(s) 54, 63, 180
Bsp143I GATC 6 cut(s) 198, 333, 363, 526, 746, 1262
Bsp68I TCGCGA 1 cut(s) 140
BspACI CCGC 3 cut(s) 10, 271, 707
BspANI GGCC 2 cut(s) 173, 284
BspCNI CTCAG 1 cut(s) 220
BspFNI CGCG 2 cut(s) 134, 140
BspLI GGNNCC 3 cut(s) 67, 188, 380
BspMAI CTGCAG 2 cut(s) 492, 1090
BspOI GCTAGC 1 cut(s) 1050
BspPI GGATC 5 cut(s) 193, 328, 371, 534, 1270
BspT104I TTCGAA 1 cut(s) 1207
BspT107I GGYRCC 1 cut(s) 65
BsrFI RCCGGY 1 cut(s) 144
BsrI ACTGG 4 cut(s) 580, 634, 661, 1198
BssAI RCCGGY 1 cut(s) 144
BssECI CCNNGG 3 cut(s) 382, 417, 1199
BssMI GATC 6 cut(s) 198, 333, 363, 526, 746, 1262
BssNI GRCGYC 1 cut(s) 66
BssSI CACGAG 1 cut(s) 86
BssT1I CCWWGG 1 cut(s) 1199
Bst2BI CACGAG 1 cut(s) 86
Bst2UI CCWGG 1 cut(s) 444
Bst4CI ACNGT 4 cut(s) 372, 513, 694, 1026
Bst6I CTCTTC 1 cut(s) 386
BstACI GRCGYC 1 cut(s) 66
BstAPI GCANNNNNTGC 1 cut(s) 42
BstBI TTCGAA 1 cut(s) 1207
BstC8I GCNNGC 5 cut(s) 43, 59, 138, 783, 1048
BstDEI CTNAG 2 cut(s) 228, 846
BstENI CCTNNNNNAGG 1 cut(s) 1161
BstF5I GGATG 3 cut(s) 413, 709, 1048
BstFNI CGCG 2 cut(s) 134, 140
BstH2I RGCGCY 1 cut(s) 69
BstHHI GCGC 3 cut(s) 68, 113, 136
BstKTI GATC 6 cut(s) 201, 336, 366, 529, 749, 1265
BstMAI GTCTC 2 cut(s) 519, 854
BstMBI GATC 6 cut(s) 198, 333, 363, 526, 746, 1262
BstMCI CGRYCG 1 cut(s) 149
BstMWI GCNNNNNNNGC 4 cut(s) 42, 58, 63, 620
BstNI CCWGG 1 cut(s) 444
BstNSI RCATGY 1 cut(s) 900
BstPAI GACNNNNGTC 1 cut(s) 1320
BstSCI CCNGG 3 cut(s) 189, 284, 442
BstSFI CTRYAG 2 cut(s) 488, 1086
BstUI CGCG 2 cut(s) 134, 140
BstV1I GCAGC 7 cut(s) 20, 474, 502, 632, 946, 1037, 1100
BstX2I RGATCY 2 cut(s) 198, 746
BstYI RGATCY 2 cut(s) 198, 746
BsuRI GGCC 2 cut(s) 173, 284
BtgZI GCGATG 1 cut(s) 115
BtsCI GGATG 3 cut(s) 413, 709, 1048
BtsI GCAGTG 3 cut(s) 124, 500, 1083
BtsIMutI CAGTG 6 cut(s) 124, 500, 627, 647, 690, 1083
BtuMI TCGCGA 1 cut(s) 140
Cac8I GCNNGC 5 cut(s) 43, 59, 138, 783, 1048
CfoI GCGC 3 cut(s) 68, 113, 136
Cfr10I RCCGGY 1 cut(s) 144
Cfr13I GGNCC 3 cut(s) 171, 379, 1196
Csp6I GTAC 1 cut(s) 161
CspAI ACCGGT 1 cut(s) 144
CviAII CATG 2 cut(s) 897, 1151
CviQI GTAC 1 cut(s) 161
DdeI CTNAG 2 cut(s) 228, 846
DinI GGCGCC 1 cut(s) 67
DpnI GATC 6 cut(s) 200, 335, 365, 528, 748, 1264
DpnII GATC 6 cut(s) 198, 333, 363, 526, 746, 1262
DraI TTTAAA 1 cut(s) 1338
DraIII CACNNNGTG 1 cut(s) 947
EaeI YGGCCR 1 cut(s) 282
Eam1104I CTCTTC 1 cut(s) 386
EarI CTCTTC 1 cut(s) 386
Ecl136II GAGCTC 2 cut(s) 52, 61
Eco130I CCWWGG 1 cut(s) 1199
Eco24I GRGCYC 3 cut(s) 54, 63, 180
Eco32I GATATC 2 cut(s) 1037, 1329
Eco47I GGWCC 2 cut(s) 379, 1196
Eco53kI GAGCTC 2 cut(s) 52, 61
Eco57I CTGAAG 1 cut(s) 706
Eco88I CYCGRG 3 cut(s) 164, 879, 913
EcoICRI GAGCTC 2 cut(s) 52, 61
EcoNI CCTNNNNNAGG 1 cut(s) 1161
EcoRII CCWGG 1 cut(s) 442
EcoRV GATATC 2 cut(s) 1037, 1329
EcoT14I CCWWGG 1 cut(s) 1199
EcoT38I GRGCYC 3 cut(s) 54, 63, 180
EgeI GGCGCC 1 cut(s) 67
EheI GGCGCC 1 cut(s) 67
ErhI CCWWGG 1 cut(s) 1199
FaeI CATG 2 cut(s) 900, 1154
FalI AAGNNNNNCTT 2 cut(s) 920, 952
FaqI GGGAC 2 cut(s) 301, 1328
FatI CATG 2 cut(s) 896, 1150
FauI CCCGC 2 cut(s) 3, 264
Fnu4HI GCNGC 7 cut(s) 34, 488, 491, 621, 960, 1051, 1089
FokI GGATG 3 cut(s) 400, 716, 1055
FriOI GRGCYC 3 cut(s) 54, 63, 180
Fsp4HI GCNGC 7 cut(s) 34, 488, 491, 621, 960, 1051, 1089
FspBI CTAG 5 cut(s) 360, 945, 1047, 1095, 1158
GlaI GCGC 3 cut(s) 67, 112, 135
GluI GCNGC 7 cut(s) 34, 488, 491, 621, 960, 1051, 1089
HaeII RGCGCY 1 cut(s) 69
HaeIII GGCC 2 cut(s) 173, 284
HapII CCGG 4 cut(s) 69, 145, 190, 285
HhaI GCGC 3 cut(s) 68, 113, 136
Hin1I GRCGYC 1 cut(s) 66
Hin1II CATG 2 cut(s) 900, 1154
Hin6I GCGC 3 cut(s) 66, 111, 134
HinP1I GCGC 3 cut(s) 66, 111, 134
HindIII AAGCTT 1 cut(s) 929
HinfI GANTC 3 cut(s) 687, 971, 1316
HpaII CCGG 4 cut(s) 69, 145, 190, 285
HphI GGTGA 4 cut(s) 163, 834, 933, 935
Hpy166II GTNNAC 4 cut(s) 16, 91, 671, 833
Hpy188III TCNNGA 6 cut(s) 139, 196, 235, 503, 913, 1040
Hpy8I GTNNAC 4 cut(s) 16, 91, 671, 833
Hpy99I CGWCG 2 cut(s) 25, 185
HpyAV CCTTC 3 cut(s) 730, 898, 1024
HpyCH4III ACNGT 4 cut(s) 372, 513, 694, 1026
HpyCH4V TGCA 8 cut(s) 36, 129, 490, 620, 785, 962, 1088, 1243
HpyF10VI GCNNNNNNNGC 4 cut(s) 42, 58, 63, 620
HpyF3I CTNAG 2 cut(s) 228, 846
Hsp92I GRCGYC 1 cut(s) 66
Hsp92II CATG 2 cut(s) 900, 1154
HspAI GCGC 3 cut(s) 66, 111, 134
KasI GGCGCC 1 cut(s) 65
Kzo9I GATC 6 cut(s) 198, 333, 363, 526, 746, 1262
LmnI GCTCC 2 cut(s) 49, 758
Lsp1109I GCAGC 7 cut(s) 20, 474, 502, 632, 946, 1037, 1100
LweI GCATC 6 cut(s) 138, 258, 607, 694, 1033, 1056
MaeI CTAG 5 cut(s) 360, 945, 1047, 1095, 1158
MaeIII GTNAC 1 cut(s) 235
MalI GATC 6 cut(s) 200, 335, 365, 528, 748, 1264
MboI GATC 6 cut(s) 198, 333, 363, 526, 746, 1262
MboII GAAGA 2 cut(s) 403, 746
MflI RGATCY 2 cut(s) 198, 746
MhlI GDGCHC 3 cut(s) 54, 63, 180
MluCI AATT 7 cut(s) 209, 556, 569, 711, 851, 963, 1167
Mly113I GGCGCC 1 cut(s) 66
MlyI GAGTC 1 cut(s) 1310
MmeI TCCRAC 2 cut(s) 226, 676
MroXI GAANNNNTTC 1 cut(s) 908
MseI TTAA 2 cut(s) 1337, 1351
MslI CAYNNNNRTG 2 cut(s) 895, 1064
MspI CCGG 4 cut(s) 69, 145, 190, 285
MspR9I CCNGG 3 cut(s) 191, 286, 444
Mva1269I GAATGC 1 cut(s) 447
MvaI CCWGG 1 cut(s) 444
MvnI CGCG 2 cut(s) 134, 140
MwoI GCNNNNNNNGC 4 cut(s) 42, 58, 63, 620
NarI GGCGCC 1 cut(s) 66
NciI CCSGG 2 cut(s) 191, 286
NdeII GATC 6 cut(s) 198, 333, 363, 526, 746, 1262
NheI GCTAGC 1 cut(s) 1046
NlaIII CATG 2 cut(s) 900, 1154
NlaIV GGNNCC 3 cut(s) 67, 188, 380
NmeAIII GCCGAG 3 cut(s) 33, 42, 199
NmuCI GTSAC 1 cut(s) 235
NruI TCGCGA 1 cut(s) 140
NspI RCATGY 1 cut(s) 900
NspV TTCGAA 1 cut(s) 1207
PaeR7I CTCGAG 1 cut(s) 879
PciI ACATGT 1 cut(s) 896
PcsI WCGNNNNNNNCGW 1 cut(s) 171
PctI GAATGC 1 cut(s) 447
PdmI GAANNNNTTC 1 cut(s) 908
PfeI GAWTC 2 cut(s) 687, 971
PinAI ACCGGT 1 cut(s) 144
PkrI GCNGC 7 cut(s) 35, 489, 492, 622, 961, 1052, 1090
PleI GAGTC 1 cut(s) 1310
PluTI GGCGCC 1 cut(s) 69
PpsI GAGTC 1 cut(s) 1310
PscI ACATGT 1 cut(s) 896
PshAI GACNNNNGTC 1 cut(s) 1320
Psp124BI GAGCTC 2 cut(s) 54, 63
Psp6I CCWGG 1 cut(s) 442
PspGI CCWGG 1 cut(s) 442
PspN4I GGNNCC 3 cut(s) 67, 188, 380
PspPI GGNCC 3 cut(s) 171, 379, 1196
PspXI VCTCGAGB 1 cut(s) 879
PstI CTGCAG 2 cut(s) 492, 1090
PsuI RGATCY 2 cut(s) 198, 746
RruI TCGCGA 1 cut(s) 140
RsaI GTAC 1 cut(s) 162
RsaNI GTAC 1 cut(s) 161
RseI CAYNNNNRTG 2 cut(s) 895, 1064
SacI GAGCTC 2 cut(s) 54, 63
SaqAI TTAA 2 cut(s) 1337, 1351
SatI GCNGC 7 cut(s) 34, 488, 491, 621, 960, 1051, 1089
Sau3AI GATC 6 cut(s) 198, 333, 363, 526, 746, 1262
Sau96I GGNCC 3 cut(s) 171, 379, 1196
SchI GAGTC 1 cut(s) 1310
ScrFI CCNGG 3 cut(s) 191, 286, 444
SduI GDGCHC 3 cut(s) 54, 63, 180
SfaNI GCATC 6 cut(s) 138, 258, 607, 694, 1033, 1056
SfcI CTRYAG 2 cut(s) 488, 1086
SfoI GGCGCC 1 cut(s) 67
Sfr274I CTCGAG 1 cut(s) 879
SfuI TTCGAA 1 cut(s) 1207
SinI GGWCC 2 cut(s) 379, 1196
SlaI CTCGAG 1 cut(s) 879
SmiMI CAYNNNNRTG 2 cut(s) 895, 1064
SmlI CTYRAG 2 cut(s) 879, 1002
SmoI CTYRAG 2 cut(s) 879, 1002
Sse9I AATT 7 cut(s) 209, 556, 569, 711, 851, 963, 1167
SsiI CCGC 3 cut(s) 10, 271, 707
SspDI GGCGCC 1 cut(s) 65
SspMI CTAG 5 cut(s) 360, 945, 1047, 1095, 1158
SstI GAGCTC 2 cut(s) 54, 63
StyD4I CCNGG 3 cut(s) 189, 284, 442
StyI CCWWGG 1 cut(s) 1199
TaaI ACNGT 4 cut(s) 372, 513, 694, 1026
TaqI TCGA 5 cut(s) 117, 529, 880, 1207, 1342
TasI AATT 7 cut(s) 209, 556, 569, 711, 851, 963, 1167
TfiI GAWTC 2 cut(s) 687, 971
Tru1I TTAA 2 cut(s) 1337, 1351
Tru9I TTAA 2 cut(s) 1337, 1351
TscAI CASTG 6 cut(s) 131, 500, 634, 654, 697, 1090
TseFI GTSAC 1 cut(s) 235
TseI GCWGC 7 cut(s) 33, 487, 490, 620, 959, 1050, 1088
Tsp45I GTSAC 1 cut(s) 235
TspDTI ATGAA 2 cut(s) 1125, 1139
TspGWI ACGGA 2 cut(s) 38, 1076
TspRI CASTG 6 cut(s) 131, 500, 634, 654, 697, 1090
VpaK11BI GGWCC 2 cut(s) 379, 1196
XagI CCTNNNNNAGG 1 cut(s) 1161
XapI RAATTY 1 cut(s) 556
XceI RCATGY 1 cut(s) 900
XhoI CTCGAG 1 cut(s) 879
XmnI GAANNNNTTC 1 cut(s) 908
XspI CTAG 5 cut(s) 360, 945, 1047, 1095, 1158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.