AT4G01580

B3 DNA binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0000156
Physical Location & Seq
Forward (+)
685670 .. 686886
1217 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G01580.1

Sequence Viewer

Length: 573 bp
ATGGTTATTACCCGAAACATGAAGGCCAGAGCCACCTCAGTCTCTCACCGCCAATCACAGCAAGATCCTGAGTCGCCGGTGAAGAAGTTCTTCAAGTTGGTCTTACCTTCAACGATGAAGGATAAGATGATGAGGATTCCGCCAAGATTCGTAAAGCTACAAGGGTCTAAACTCTCAGAGGTTGTTACATTAGTGACTCCTGCGGGATATAAGCGTTCCATAAAGCTTAAACGGATCGGTGAAGAGATTTGGTTCCATGAGGGTTGGAGTGAGTTTGCAGAGGCTCATTCCATCGAGGAAGGCCACTTTCTCTTGTTCGAATACAAGAAGAATTCGAGTTTCCGTGTAATAATCTTCAATGCTTCGGCTTGCGAGACCAACTATCCTCTGGATGCAGTTCATATCATCGACAGCGACGATGATGTAATTGAAATTACAGGCAAAGAGTTTGATACAGAGCACAAATCCAAGAAGAGACCAAGAGACATCGAGTTTGACAAGATTCTACACGATGTTGATGTGATGCAAGTGCTTAAAGAAGAAGAAGAAGACAAGAGAGTCCTCAGGGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

190

Amino Acids

22.12

Weight (kDa)

7.07

Isoelectric Point (pI)

58.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 30 - 121 2e-17 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000156)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49475 AT3G18960 AT3G18960 AT3G18960 AT4G01580
fragaria_vesca FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14670 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14690 FvH4_1g14700 FvH4_1g29250 FvH4_6g29400 FvH4_6g38681 FvH4_6g38690 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_7g02010
malus_domestica MD00G1020600.v1.1 MD00G1022000.v1.1 MD00G1022100.v1.1 MD02G1159700.v1.1 MD02G1159800.v1.1 MD02G1159900.v1.1 MD02G1160000.v1.1 MD02G1160300.v1.1 MD15G1274100.v1.1 MD15G1274200.v1.1 MD15G1274400.v1.1 MD15G1302000.v1.1
prunus_persica Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.3G083400_v2.0.a1 Prupe.6G229600_v2.0.a1 Prupe.7G039600_v2.0.a1 Prupe.7G044500_v2.0.a1 Prupe.7G044800_v2.0.a1 Prupe.7G143100_v2.0.a1 Prupe.7G143500_v2.0.a1 Prupe.7G143600_v2.0.a1 Prupe.7G143700_v2.0.a1 Prupe.7G143800_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.8G072800_v2.0.a1 Prupe.8G072800_v2.0.a1
pyrus_communis pycom02g12620 pycom02g12630 pycom15g23750 pycom15g26490 pycom17g21160
rosa_chinensis RchiOBHm_Chr2g0103421 RchiOBHm_Chr2g0103431 RchiOBHm_Chr2g0103441 RchiOBHm_Chr2g0103491 RchiOBHm_Chr2g0103501 RchiOBHm_Chr2g0103521 RchiOBHm_Chr2g0103541 RchiOBHm_Chr2g0103551 RchiOBHm_Chr2g0103561 RchiOBHm_Chr2g0134821 RchiOBHm_Chr2g0152161 RchiOBHm_Chr2g0152181 RchiOBHm_Chr7g0227261 RchiOBHm_Chr7g0227351 RchiOBHm_Chr7g0227431
rosa_laevigata RLG00000001649 RLG00000001653 RLG00000001659 RLG00000017235 RLG00000017236 RLG00000017240 RLG00000017241 RLG00000017242 RLG00000017243 RLG00000017244 RLG00000017349 RLG00000019424 RLG00000020614 RLG00000020615
rosa_multiflora Rmu_co8247875.1_g000001 Rmu_co8429551.1_g000001 Rmu_sc0000173.1_g000009 Rmu_sc0000718.1_g000004 Rmu_sc0001530.1_g000001 Rmu_sc0001530.1_g000002 Rmu_sc0001530.1_g000004 Rmu_sc0001530.1_g000005 Rmu_sc0001852.1_g000023 Rmu_sc0001852.1_g000024 Rmu_sc0002434.1_g000001 Rmu_sc0002434.1_g000002 Rmu_sc0003043.1_g000016 Rmu_sc0003153.1_g000005 Rmu_sc0011039.1_g000001 Rmu_sc0031822.1_g000001
rosa_roxburghii Rroxscaffold_2G00095860 Rroxscaffold_2G00095870 Rroxscaffold_2G00109720 Rroxscaffold_2G00139530 Rroxscaffold_2G00139550 Rroxscaffold_2G00139570 Rroxscaffold_2G00139580 Rroxscaffold_2G00139630 Rroxscaffold_2G00139640 Rroxscaffold_4G00328430 Rroxscaffold_4G00328440 Rroxscaffold_4G00328450
rosa_rugosa Rorug02G0114900 Rorug02G0115000 Rorug02G0115000 Rorug02G0115200 Rorug02G0115300 Rorug02G0115400 Rorug02G0115500 Rorug02G0115600 Rorug02G0115600 Rorug02G0115600 Rorug02G0115700 Rorug02G0320300 Rorug02G0431300 Rorug02G0431300 Rorug06G0028200 Rorug07G0241300
rosa_samantha Rh2AG163200 Rh2AG163300 Rh2AG163700 Rh2AG163800 Rh2AG163900 Rh2AG164000 Rh2AG373400 Rh2AG492600 Rh2BG170300 Rh2BG170400 Rh2BG170800 Rh2BG170900 Rh2BG171000 Rh2BG171100 Rh2BG171200 Rh2BG377800 Rh2BG505000 Rh2BG505100 Rh2BG505200 Rh2CG170300 Rh2CG170700 Rh2CG479000 Rh2DG169100 Rh2DG169200 Rh2DG169300 Rh2DG516400 Rh7AG391200 Rh7BG376200 Rh7CG410200 Rh7CG411500 Rh7CG412000 Rh7CG412700 Rh7DG388800
rosa_wichuraiana Rw2G012830 Rw2G012840 Rw2G012870 Rw2G012880 Rw2G012890 Rw2G012900 Rw2G030310 Rw2G040470 Rw2G040480 Rw7G032720 Rw7G032730 Rw7G032750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 557
AciI CCGC 3 cut(s) 49, 140, 203
AclWI GGATC 2 cut(s) 59, 242
AcsI RAATTY 1 cut(s) 331
AgsI TTSAA 4 cut(s) 94, 111, 358, 431
AluBI AGCT 2 cut(s) 157, 226
AluI AGCT 2 cut(s) 157, 226
Alw21I GWGCWC 1 cut(s) 462
Alw26I GTCTC 4 cut(s) 46, 368, 469, 477
AlwI GGATC 2 cut(s) 59, 242
AoxI GGCC 2 cut(s) 24, 301
ApoI RAATTY 1 cut(s) 331
ArsI GACNNNNNNTTYG 2 cut(s) 476, 508
Asp700I GAANNNNTTC 2 cut(s) 86, 89
AsuHPI GGTGA 3 cut(s) 38, 91, 251
AsuII TTCGAA 1 cut(s) 318
AxyI CCTNAGG 1 cut(s) 563
BbsI GAAGAC 1 cut(s) 555
Bbv12I GWGCWC 1 cut(s) 462
BccI CCATC 1 cut(s) 299
BcoDI GTCTC 4 cut(s) 46, 368, 469, 477
BmiI GGNNCC 1 cut(s) 254
BmsI GCATC 2 cut(s) 382, 513
BpiI GAAGAC 1 cut(s) 555
Bpu14I TTCGAA 1 cut(s) 318
BsaI GGTCTC 2 cut(s) 368, 469
Bse118I RCCGGY 1 cut(s) 76
Bse21I CCTNAGG 1 cut(s) 563
BseGI GGATG 1 cut(s) 397
BseMII CTCAG 3 cut(s) 51, 60, 189
BshFI GGCC 2 cut(s) 26, 303
BsiHKAI GWGCWC 1 cut(s) 462
BsiSI CCGG 1 cut(s) 77
BsmAI GTCTC 4 cut(s) 46, 368, 469, 477
BsnI GGCC 2 cut(s) 26, 303
Bso31I GGTCTC 2 cut(s) 368, 469
Bsp119I TTCGAA 1 cut(s) 318
Bsp1286I GDGCHC 1 cut(s) 462
Bsp143I GATC 2 cut(s) 64, 234
BspACI CCGC 3 cut(s) 49, 140, 203
BspANI GGCC 2 cut(s) 26, 303
BspCNI CTCAG 3 cut(s) 50, 61, 188
BspLI GGNNCC 1 cut(s) 254
BspPI GGATC 2 cut(s) 59, 242
BspT104I TTCGAA 1 cut(s) 318
BspTNI GGTCTC 2 cut(s) 368, 469
BsrFI RCCGGY 1 cut(s) 76
BssAI RCCGGY 1 cut(s) 76
BssMI GATC 2 cut(s) 64, 234
Bst6I CTCTTC 2 cut(s) 237, 467
BstBI TTCGAA 1 cut(s) 318
BstC8I GCNNGC 1 cut(s) 370
BstDEI CTNAG 4 cut(s) 37, 69, 175, 563
BstF5I GGATG 1 cut(s) 397
BstKTI GATC 2 cut(s) 67, 237
BstMAI GTCTC 4 cut(s) 46, 368, 469, 477
BstMBI GATC 2 cut(s) 64, 234
BstV2I GAAGAC 1 cut(s) 555
BstX2I RGATCY 1 cut(s) 64
BstYI RGATCY 1 cut(s) 64
Bsu36I CCTNAGG 1 cut(s) 563
BsuRI GGCC 2 cut(s) 26, 303
BtsCI GGATG 1 cut(s) 397
Cac8I GCNNGC 1 cut(s) 370
Cfr10I RCCGGY 1 cut(s) 76
CviAII CATG 2 cut(s) 19, 257
CviJI RGCY 7 cut(s) 26, 32, 157, 226, 284, 303, 368
CviKI_1 RGCY 7 cut(s) 26, 32, 157, 226, 284, 303, 368
DdeI CTNAG 4 cut(s) 37, 69, 175, 563
DpnI GATC 2 cut(s) 66, 236
DpnII GATC 2 cut(s) 64, 234
DrdI GACNNNNNNGTC 1 cut(s) 557
DseDI GACNNNNNNGTC 1 cut(s) 557
Eam1104I CTCTTC 2 cut(s) 237, 467
EarI CTCTTC 2 cut(s) 237, 467
EciI GGCGGA 1 cut(s) 129
Eco31I GGTCTC 2 cut(s) 368, 469
Eco81I CCTNAGG 1 cut(s) 563
EcoRI GAATTC 1 cut(s) 331
FaeI CATG 2 cut(s) 22, 260
FaiI YATR 5 cut(s) 20, 210, 221, 258, 402
FalI AAGNNNNNCTT 4 cut(s) 74, 106, 86, 118
FatI CATG 2 cut(s) 18, 256
FauI CCCGC 1 cut(s) 196
FokI GGATG 1 cut(s) 404
HaeIII GGCC 2 cut(s) 26, 303
HapII CCGG 1 cut(s) 77
Hin1II CATG 2 cut(s) 22, 260
HindIII AAGCTT 1 cut(s) 224
HinfI GANTC 6 cut(s) 71, 136, 147, 196, 502, 558
HpaII CCGG 1 cut(s) 77
HphI GGTGA 3 cut(s) 38, 91, 251
Hpy188I TCNGA 1 cut(s) 178
Hpy188III TCNNGA 2 cut(s) 68, 389
Hpy99I CGWCG 1 cut(s) 419
HpyAV CCTTC 4 cut(s) 16, 112, 117, 293
HpyCH4V TGCA 3 cut(s) 278, 395, 526
HpyF3I CTNAG 4 cut(s) 37, 69, 175, 563
Hsp92II CATG 2 cut(s) 22, 260
Kzo9I GATC 2 cut(s) 64, 234
LpnPI CCDG 7 cut(s) 40, 81, 90, 213, 374, 423, 550
LweI GCATC 2 cut(s) 382, 513
MaeIII GTNAC 2 cut(s) 184, 193
MalI GATC 2 cut(s) 66, 236
MboI GATC 2 cut(s) 64, 234
MflI RGATCY 1 cut(s) 64
MhlI GDGCHC 1 cut(s) 462
MluCI AATT 3 cut(s) 331, 426, 432
MlyI GAGTC 3 cut(s) 80, 190, 567
MmeI TCCRAC 1 cut(s) 245
MnlI CCTC 8 cut(s) 46, 126, 172, 253, 274, 289, 396, 572
MroXI GAANNNNTTC 2 cut(s) 86, 89
MseI TTAA 2 cut(s) 228, 534
MspI CCGG 1 cut(s) 77
NdeII GATC 2 cut(s) 64, 234
NlaIII CATG 2 cut(s) 22, 260
NlaIV GGNNCC 1 cut(s) 254
NmuCI GTSAC 1 cut(s) 193
NspV TTCGAA 1 cut(s) 318
PcsI WCGNNNNNNNCGW 1 cut(s) 414
PdmI GAANNNNTTC 2 cut(s) 86, 89
PfeI GAWTC 3 cut(s) 136, 147, 502
PleI GAGTC 3 cut(s) 79, 190, 566
PpsI GAGTC 3 cut(s) 79, 190, 566
PspN4I GGNNCC 1 cut(s) 254
PsuI RGATCY 1 cut(s) 64
SaqAI TTAA 2 cut(s) 228, 534
Sau3AI GATC 2 cut(s) 64, 234
SchI GAGTC 3 cut(s) 80, 190, 567
SduI GDGCHC 1 cut(s) 462
SetI ASST 5 cut(s) 38, 109, 159, 183, 228
SfaNI GCATC 2 cut(s) 382, 513
SfuI TTCGAA 1 cut(s) 318
SgrAI CRCCGGYG 1 cut(s) 76
Sse9I AATT 3 cut(s) 331, 426, 432
SsiI CCGC 3 cut(s) 49, 140, 203
TaqI TCGA 5 cut(s) 294, 318, 335, 408, 489
TasI AATT 3 cut(s) 331, 426, 432
TfiI GAWTC 3 cut(s) 136, 147, 502
Tru1I TTAA 2 cut(s) 228, 534
Tru9I TTAA 2 cut(s) 228, 534
TseFI GTSAC 1 cut(s) 193
Tsp45I GTSAC 1 cut(s) 193
TspDTI ATGAA 3 cut(s) 35, 131, 389
TspGWI ACGGA 2 cut(s) 247, 332
XapI RAATTY 1 cut(s) 331
XcmI CCANNNNNNNNNTGG 1 cut(s) 385
XmnI GAANNNNTTC 2 cut(s) 86, 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.