Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000156

Physical Location & Seq

Genomic Coordinates Forward (+)

77904042 .. 77906544

Gene Structure 2503 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00139550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGTTTCTCCTGGCCAGCAAACATTTTGTGCTACCACTACCCATTTTTTCAAGGTTATTCTGGAGGACAATTCTAGAGACCTCAAACTGGGGAAGGAGATTTTCTTGCAAAGAAAAATACAGCTGGAGGCTGTTCTTGCACTCCCAAGATTCCTAAAACAAACAGTTGATCATGAGGTTATTGAAAATGCTATAGCTCCTCAGAGAGCTACTGCATTCAAACTTGATAACAACCCTTTTTTCAAGATCTCATTGAAGCCCTCTAATATCCATAAAAGTATTTTGTCTTTGCCATCTGAATTTGCCAAGAGATATCTTATTAAGCTGCCTGCTGGCATTGCCACCCTTCAAGTTTCGAGTGGAAGAACTTCGTCTGTTAAAACTTGGTCTGTCAAATTCAAGTATGATTTTGAGAACTCAAAAGCGCAATTGCTGAATGGTTGGTCAGCATTTGTAAGGGACAATAATTTGAAAGTTAGGGATGTGTGTGGCTTTATCCTTATGGACCGCATTGAACTTTTATTCGAAGTTGCGCTTCCCAACTGTGTACCGGCTACATTTGTCAAGAGTTTCATTAAGGAGGCGAATCAAACCCTGAAGCTTCAGGTTACAGATAGATCGTGGCCTGTAAAGGTGATTCGCTTTGGCAAGAATTCAGCCAAGTTCTCTGGTGGCTGGGCTGCATTTGCTAAAGAAAACGGGTTAGAAAAAGGAGACGTTTGCATATTCGAGCTCATGGAGATCAATGACATTGTACTGAAAGTTCACATTTTCAGATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

260

Amino Acids

29.47

Weight (kDa)

9.55

Isoelectric Point (pI)

31.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	80 - 170	5.6e-14	B3 DNA binding domain
B3	PF02362	183 - 259	6.3e-13	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000156)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49475 AT3G18960 AT3G18960 AT3G18960 AT4G01580
fragaria_vesca	FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14670 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14690 FvH4_1g14700 FvH4_1g29250 FvH4_6g29400 FvH4_6g38681 FvH4_6g38690 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_7g02010
malus_domestica	MD00G1020600.v1.1 MD00G1022000.v1.1 MD00G1022100.v1.1 MD02G1159700.v1.1 MD02G1159800.v1.1 MD02G1159900.v1.1 MD02G1160000.v1.1 MD02G1160300.v1.1 MD15G1274100.v1.1 MD15G1274200.v1.1 MD15G1274400.v1.1 MD15G1302000.v1.1
prunus_persica	Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.3G083400_v2.0.a1 Prupe.6G229600_v2.0.a1 Prupe.7G039600_v2.0.a1 Prupe.7G044500_v2.0.a1 Prupe.7G044800_v2.0.a1 Prupe.7G143100_v2.0.a1 Prupe.7G143500_v2.0.a1 Prupe.7G143600_v2.0.a1 Prupe.7G143700_v2.0.a1 Prupe.7G143800_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.8G072800_v2.0.a1 Prupe.8G072800_v2.0.a1
pyrus_communis	pycom02g12620 pycom02g12630 pycom15g23750 pycom15g26490 pycom17g21160
rosa_chinensis	RchiOBHm_Chr2g0103421 RchiOBHm_Chr2g0103431 RchiOBHm_Chr2g0103441 RchiOBHm_Chr2g0103491 RchiOBHm_Chr2g0103501 RchiOBHm_Chr2g0103521 RchiOBHm_Chr2g0103541 RchiOBHm_Chr2g0103551 RchiOBHm_Chr2g0103561 RchiOBHm_Chr2g0134821 RchiOBHm_Chr2g0152161 RchiOBHm_Chr2g0152181 RchiOBHm_Chr7g0227261 RchiOBHm_Chr7g0227351 RchiOBHm_Chr7g0227431
rosa_laevigata	RLG00000001649 RLG00000001653 RLG00000001659 RLG00000017235 RLG00000017236 RLG00000017240 RLG00000017241 RLG00000017242 RLG00000017243 RLG00000017244 RLG00000017349 RLG00000019424 RLG00000020614 RLG00000020615
rosa_multiflora	Rmu_co8247875.1_g000001 Rmu_co8429551.1_g000001 Rmu_sc0000173.1_g000009 Rmu_sc0000718.1_g000004 Rmu_sc0001530.1_g000001 Rmu_sc0001530.1_g000002 Rmu_sc0001530.1_g000004 Rmu_sc0001530.1_g000005 Rmu_sc0001852.1_g000023 Rmu_sc0001852.1_g000024 Rmu_sc0002434.1_g000001 Rmu_sc0002434.1_g000002 Rmu_sc0003043.1_g000016 Rmu_sc0003153.1_g000005 Rmu_sc0011039.1_g000001 Rmu_sc0031822.1_g000001
rosa_roxburghii	Rroxscaffold_2G00095860 Rroxscaffold_2G00095870 Rroxscaffold_2G00109720 Rroxscaffold_2G00139530 Rroxscaffold_2G00139550 Rroxscaffold_2G00139570 Rroxscaffold_2G00139580 Rroxscaffold_2G00139630 Rroxscaffold_2G00139640 Rroxscaffold_4G00328430 Rroxscaffold_4G00328440 Rroxscaffold_4G00328450
rosa_rugosa	Rorug02G0114900 Rorug02G0115000 Rorug02G0115000 Rorug02G0115200 Rorug02G0115300 Rorug02G0115400 Rorug02G0115500 Rorug02G0115600 Rorug02G0115600 Rorug02G0115600 Rorug02G0115700 Rorug02G0320300 Rorug02G0431300 Rorug02G0431300 Rorug06G0028200 Rorug07G0241300
rosa_samantha	Rh2AG163200 Rh2AG163300 Rh2AG163700 Rh2AG163800 Rh2AG163900 Rh2AG164000 Rh2AG373400 Rh2AG492600 Rh2BG170300 Rh2BG170400 Rh2BG170800 Rh2BG170900 Rh2BG171000 Rh2BG171100 Rh2BG171200 Rh2BG377800 Rh2BG505000 Rh2BG505100 Rh2BG505200 Rh2CG170300 Rh2CG170700 Rh2CG479000 Rh2DG169100 Rh2DG169200 Rh2DG169300 Rh2DG516400 Rh7AG391200 Rh7BG376200 Rh7CG410200 Rh7CG411500 Rh7CG412000 Rh7CG412700 Rh7DG388800
rosa_wichuraiana	Rw2G012830 Rw2G012840 Rw2G012870 Rw2G012880 Rw2G012890 Rw2G012900 Rw2G030310 Rw2G040470 Rw2G040480 Rw7G032720 Rw7G032730 Rw7G032750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	508
AcoI	YGGCCR	1 cut(s)	13
AcsI	RAATTY	3 cut(s)	299, 395, 652
AcuI	CTGAAG	2 cut(s)	587, 617
AfaI	GTAC	2 cut(s)	549, 756
AfiI	CCNNNNNNNGG	1 cut(s)	88
AgsI	TTSAA	9 cut(s)	52, 185, 220, 244, 256, 350, 400, 472, 515
AjnI	CCWGG	1 cut(s)	10
AluBI	AGCT	6 cut(s)	124, 197, 209, 325, 601, 733
AluI	AGCT	6 cut(s)	124, 197, 209, 325, 601, 733
Alw21I	GWGCWC	1 cut(s)	735
Alw26I	GTCTC	2 cut(s)	72, 708
AoxI	GGCC	2 cut(s)	13, 623
ApeKI	GCWGC	2 cut(s)	325, 680
ApoI	RAATTY	3 cut(s)	299, 395, 652
Asp700I	GAANNNNTTC	1 cut(s)	367
AspLEI	GCGC	2 cut(s)	427, 535
AspS9I	GGNCC	1 cut(s)	505
AsuHPI	GGTGA	1 cut(s)	646
AsuII	TTCGAA	1 cut(s)	525
AvaII	GGWCC	1 cut(s)	505
BalI	TGGCCA	1 cut(s)	15
BanII	GRGCYC	1 cut(s)	735
Bbv12I	GWGCWC	1 cut(s)	735
BbvI	GCAGC	2 cut(s)	312, 667
BccI	CCATC	1 cut(s)	301
BciT130I	CCWGG	1 cut(s)	12
BclI	TGATCA	1 cut(s)	169
BcoDI	GTCTC	2 cut(s)	72, 708
BfaI	CTAG	1 cut(s)	75
BfmI	CTRYAG	1 cut(s)	192
BglII	AGATCT	1 cut(s)	246
BisI	GCNGC	2 cut(s)	326, 681
BlsI	GCNGC	2 cut(s)	327, 682
Bme1390I	CCNGG	1 cut(s)	12
Bme18I	GGWCC	1 cut(s)	505
BmgT120I	GGNCC	1 cut(s)	505
BmrFI	CCNGG	1 cut(s)	12
BmrI	ACTGGG	1 cut(s)	98
BmuI	ACTGGG	1 cut(s)	98
BpmI	CTGGAG	2 cut(s)	83, 146
Bpu14I	TTCGAA	1 cut(s)	525
BsaI	GGTCTC	1 cut(s)	72
Bsc4I	CCNNNNNNNGG	1 cut(s)	88
Bse118I	RCCGGY	1 cut(s)	550
Bse1I	ACTGG	1 cut(s)	93
Bse3DI	GCAATG	1 cut(s)	336
BseBI	CCWGG	1 cut(s)	12
BseGI	GGATG	1 cut(s)	487
BseLI	CCNNNNNNNGG	1 cut(s)	88
BseMI	GCAATG	1 cut(s)	336
BseMII	CTCAG	1 cut(s)	215
BseNI	ACTGG	1 cut(s)	93
BseRI	GAGGAG	1 cut(s)	189
BseXI	GCAGC	2 cut(s)	312, 667
BseYI	CCCAGC	1 cut(s)	675
BshFI	GGCC	2 cut(s)	15, 625
BsiHKAI	GWGCWC	1 cut(s)	735
BsiSI	CCGG	1 cut(s)	551
BslFI	GGGAC	1 cut(s)	473
BslI	CCNNNNNNNGG	1 cut(s)	88
BsmAI	GTCTC	2 cut(s)	72, 708
BsmBI	CGTCTC	1 cut(s)	708
BsmFI	GGGAC	1 cut(s)	473
BsmI	GAATGC	1 cut(s)	215
BsnI	GGCC	2 cut(s)	15, 625
Bso31I	GGTCTC	1 cut(s)	72
Bsp119I	TTCGAA	1 cut(s)	525
Bsp1286I	GDGCHC	1 cut(s)	735
Bsp143I	GATC	4 cut(s)	169, 246, 617, 741
BspACI	CCGC	1 cut(s)	508
BspANI	GGCC	2 cut(s)	15, 625
BspCNI	CTCAG	1 cut(s)	214
BspHI	TCATGA	1 cut(s)	172
BspT104I	TTCGAA	1 cut(s)	525
BspTNI	GGTCTC	1 cut(s)	72
BsrDI	GCAATG	1 cut(s)	336
BsrFI	RCCGGY	1 cut(s)	550
BsrI	ACTGG	1 cut(s)	93
BssAI	RCCGGY	1 cut(s)	550
BssMI	GATC	4 cut(s)	169, 246, 617, 741
Bst2UI	CCWGG	1 cut(s)	12
Bst4CI	ACNGT	2 cut(s)	166, 545
BstBI	TTCGAA	1 cut(s)	525
BstC8I	GCNNGC	3 cut(s)	17, 330, 334
BstDEI	CTNAG	1 cut(s)	201
BstF5I	GGATG	1 cut(s)	487
BstHHI	GCGC	2 cut(s)	427, 535
BstKTI	GATC	4 cut(s)	172, 249, 620, 744
BstMAI	GTCTC	2 cut(s)	72, 708
BstMBI	GATC	4 cut(s)	169, 246, 617, 741
BstMWI	GCNNNNNNNGC	3 cut(s)	137, 338, 686
BstNI	CCWGG	1 cut(s)	12
BstSCI	CCNGG	1 cut(s)	10
BstSFI	CTRYAG	1 cut(s)	192
BstV1I	GCAGC	2 cut(s)	312, 667
BstX2I	RGATCY	1 cut(s)	246
BstYI	RGATCY	1 cut(s)	246
BsuRI	GGCC	2 cut(s)	15, 625
BtsCI	GGATG	1 cut(s)	487
Cac8I	GCNNGC	3 cut(s)	17, 330, 334
CciI	TCATGA	1 cut(s)	172
CfoI	GCGC	2 cut(s)	427, 535
Cfr10I	RCCGGY	1 cut(s)	550
Cfr13I	GGNCC	1 cut(s)	505
Csp6I	GTAC	2 cut(s)	548, 755
CviAII	CATG	2 cut(s)	173, 736
CviQI	GTAC	2 cut(s)	548, 755
DdeI	CTNAG	1 cut(s)	201
DpnI	GATC	4 cut(s)	171, 248, 619, 743
DpnII	GATC	4 cut(s)	169, 246, 617, 741
EaeI	YGGCCR	1 cut(s)	13
Ecl136II	GAGCTC	1 cut(s)	733
Eco24I	GRGCYC	1 cut(s)	735
Eco31I	GGTCTC	1 cut(s)	72
Eco32I	GATATC	1 cut(s)	314
Eco47I	GGWCC	1 cut(s)	505
Eco53kI	GAGCTC	1 cut(s)	733
Eco57I	CTGAAG	2 cut(s)	587, 617
EcoICRI	GAGCTC	1 cut(s)	733
EcoRI	GAATTC	1 cut(s)	652
EcoRII	CCWGG	1 cut(s)	10
EcoRV	GATATC	1 cut(s)	314
EcoT38I	GRGCYC	1 cut(s)	735
Esp3I	CGTCTC	1 cut(s)	708
FaeI	CATG	2 cut(s)	176, 739
FaiI	YATR	7 cut(s)	174, 194, 273, 405, 503, 725, 737
FalI	AAGNNNNNCTT	2 cut(s)	519, 551
FaqI	GGGAC	1 cut(s)	473
FatI	CATG	2 cut(s)	172, 735
FbaI	TGATCA	1 cut(s)	169
Fnu4HI	GCNGC	2 cut(s)	326, 681
FokI	GGATG	1 cut(s)	494
FriOI	GRGCYC	1 cut(s)	735
Fsp4HI	GCNGC	2 cut(s)	326, 681
FspBI	CTAG	1 cut(s)	75
GlaI	GCGC	2 cut(s)	426, 534
GluI	GCNGC	2 cut(s)	326, 681
GsaI	CCCAGC	1 cut(s)	679
GsuI	CTGGAG	2 cut(s)	83, 146
HaeIII	GGCC	2 cut(s)	15, 625
HapII	CCGG	1 cut(s)	551
HhaI	GCGC	2 cut(s)	427, 535
Hin1II	CATG	2 cut(s)	176, 739
Hin6I	GCGC	2 cut(s)	425, 533
HinP1I	GCGC	2 cut(s)	425, 533
HindIII	AAGCTT	1 cut(s)	599
HinfI	GANTC	3 cut(s)	150, 586, 637
HpaII	CCGG	1 cut(s)	551
HphI	GGTGA	1 cut(s)	646
Hpy166II	GTNNAC	2 cut(s)	548, 766
Hpy188I	TCNGA	3 cut(s)	204, 298, 776
Hpy188III	TCNNGA	5 cut(s)	62, 75, 173, 244, 565
Hpy8I	GTNNAC	2 cut(s)	548, 766
HpyAV	CCTTC	2 cut(s)	88, 356
HpyCH4III	ACNGT	2 cut(s)	166, 545
HpyCH4IV	ACGT	1 cut(s)	717
HpyCH4V	TGCA	5 cut(s)	109, 140, 215, 683, 723
HpyF10VI	GCNNNNNNNGC	3 cut(s)	137, 338, 686
HpyF3I	CTNAG	1 cut(s)	201
HpySE526I	ACGT	1 cut(s)	717
Hsp92II	CATG	2 cut(s)	176, 739
HspAI	GCGC	2 cut(s)	425, 533
Ksp22I	TGATCA	1 cut(s)	169
Kzo9I	GATC	4 cut(s)	169, 246, 617, 741
LmnI	GCTCC	1 cut(s)	202
Lsp1109I	GCAGC	2 cut(s)	312, 667
MaeI	CTAG	1 cut(s)	75
MaeII	ACGT	1 cut(s)	717
MaeIII	GTNAC	1 cut(s)	607
MalI	GATC	4 cut(s)	171, 248, 619, 743
MboI	GATC	4 cut(s)	169, 246, 617, 741
MboII	GAAGA	1 cut(s)	375
MfeI	CAATTG	1 cut(s)	428
MflI	RGATCY	1 cut(s)	246
MhlI	GDGCHC	1 cut(s)	735
MlsI	TGGCCA	1 cut(s)	15
MluCI	AATT	6 cut(s)	70, 299, 395, 428, 466, 652
MluNI	TGGCCA	1 cut(s)	15
MnlI	CCTC	7 cut(s)	58, 92, 121, 169, 210, 271, 574
Mox20I	TGGCCA	1 cut(s)	15
MroXI	GAANNNNTTC	1 cut(s)	367
MscI	TGGCCA	1 cut(s)	15
MseI	TTAA	3 cut(s)	321, 378, 576
Msp20I	TGGCCA	1 cut(s)	15
MspA1I	CMGCKG	1 cut(s)	124
MspI	CCGG	1 cut(s)	551
MspR9I	CCNGG	1 cut(s)	12
MunI	CAATTG	1 cut(s)	428
Mva1269I	GAATGC	1 cut(s)	215
MvaI	CCWGG	1 cut(s)	12
MwoI	GCNNNNNNNGC	3 cut(s)	137, 338, 686
NdeII	GATC	4 cut(s)	169, 246, 617, 741
NlaIII	CATG	2 cut(s)	176, 739
NspV	TTCGAA	1 cut(s)	525
PagI	TCATGA	1 cut(s)	172
PctI	GAATGC	1 cut(s)	215
PdmI	GAANNNNTTC	1 cut(s)	367
PfeI	GAWTC	3 cut(s)	150, 586, 637
PkrI	GCNGC	2 cut(s)	327, 682
Psp124BI	GAGCTC	1 cut(s)	735
Psp6I	CCWGG	1 cut(s)	10
PspFI	CCCAGC	1 cut(s)	675
PspGI	CCWGG	1 cut(s)	10
PspPI	GGNCC	1 cut(s)	505
PsrI	GAACNNNNNNTAC	2 cut(s)	747, 779
PsuI	RGATCY	1 cut(s)	246
PvuII	CAGCTG	1 cut(s)	124
RsaI	GTAC	2 cut(s)	549, 756
RsaNI	GTAC	2 cut(s)	548, 755
SacI	GAGCTC	1 cut(s)	735
SaqAI	TTAA	3 cut(s)	321, 378, 576
SatI	GCNGC	2 cut(s)	326, 681
Sau3AI	GATC	4 cut(s)	169, 246, 617, 741
Sau96I	GGNCC	1 cut(s)	505
ScrFI	CCNGG	1 cut(s)	12
SduI	GDGCHC	1 cut(s)	735
SfcI	CTRYAG	1 cut(s)	192
SfuI	TTCGAA	1 cut(s)	525
SinI	GGWCC	1 cut(s)	505
Sse9I	AATT	6 cut(s)	70, 299, 395, 428, 466, 652
SsiI	CCGC	1 cut(s)	508
SspMI	CTAG	1 cut(s)	75
SstI	GAGCTC	1 cut(s)	735
StyD4I	CCNGG	1 cut(s)	10
TaaI	ACNGT	2 cut(s)	166, 545
TaiI	ACGT	1 cut(s)	720
TaqI	TCGA	3 cut(s)	356, 525, 729
TasI	AATT	6 cut(s)	70, 299, 395, 428, 466, 652
TatI	WGTACW	1 cut(s)	754
TfiI	GAWTC	3 cut(s)	150, 586, 637
Tru1I	TTAA	3 cut(s)	321, 378, 576
Tru9I	TTAA	3 cut(s)	321, 378, 576
TseI	GCWGC	2 cut(s)	325, 680
TspDTI	ATGAA	1 cut(s)	562
VpaK11BI	GGWCC	1 cut(s)	505
XapI	RAATTY	3 cut(s)	299, 395, 652
XbaI	TCTAGA	1 cut(s)	74
XmnI	GAANNNNTTC	1 cut(s)	367
XspI	CTAG	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.