B3 domain-containing
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| B3 | PF02362 | 124 - 199 | 8e-14 | B3 DNA binding domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 1 cut(s) | 508 |
| AcuI | CTGAAG | 2 cut(s) | 443, 473 |
| AfaI | GTAC | 2 cut(s) | 19, 405 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 617 |
| AgsI | TTSAA | 5 cut(s) | 155, 161, 191, 306, 320 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 85, 117 |
| AluBI | AGCT | 6 cut(s) | 12, 231, 323, 457, 589, 625 |
| AluI | AGCT | 6 cut(s) | 12, 231, 323, 457, 589, 625 |
| Alw21I | GWGCWC | 3 cut(s) | 55, 591, 636 |
| Alw26I | GTCTC | 1 cut(s) | 564 |
| Ama87I | CYCGRG | 1 cut(s) | 13 |
| AoxI | GGCC | 2 cut(s) | 281, 479 |
| ApeKI | GCWGC | 3 cut(s) | 410, 536, 625 |
| ApoI | RAATTY | 1 cut(s) | 508 |
| AsuHPI | GGTGA | 1 cut(s) | 502 |
| AvaI | CYCGRG | 1 cut(s) | 13 |
| BanII | GRGCYC | 1 cut(s) | 591 |
| Bbv12I | GWGCWC | 3 cut(s) | 55, 591, 636 |
| BbvI | GCAGC | 3 cut(s) | 397, 523, 612 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 316, 350 |
| BcoDI | GTCTC | 1 cut(s) | 564 |
| BfaI | CTAG | 2 cut(s) | 21, 228 |
| BisI | GCNGC | 3 cut(s) | 411, 537, 626 |
| BlsI | GCNGC | 3 cut(s) | 412, 538, 627 |
| BmcAI | AGTACT | 1 cut(s) | 19 |
| BmeT110I | CYCGRG | 1 cut(s) | 13 |
| BsaJI | CCNNGG | 1 cut(s) | 66 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 617 |
| Bse118I | RCCGGY | 1 cut(s) | 406 |
| Bse3DI | GCAATG | 1 cut(s) | 106 |
| BseDI | CCNNGG | 1 cut(s) | 66 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 617 |
| BseMI | GCAATG | 1 cut(s) | 106 |
| BseRI | GAGGAG | 1 cut(s) | 156 |
| BseXI | GCAGC | 3 cut(s) | 397, 523, 612 |
| BseYI | CCCAGC | 1 cut(s) | 531 |
| BshFI | GGCC | 2 cut(s) | 283, 481 |
| BsiHKAI | GWGCWC | 3 cut(s) | 55, 591, 636 |
| BsiHKCI | CYCGRG | 1 cut(s) | 13 |
| BsiSI | CCGG | 1 cut(s) | 407 |
| BslFI | GGGAC | 1 cut(s) | 323 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 617 |
| BsmAI | GTCTC | 1 cut(s) | 564 |
| BsmBI | CGTCTC | 1 cut(s) | 564 |
| BsmFI | GGGAC | 1 cut(s) | 323 |
| BsnI | GGCC | 2 cut(s) | 283, 481 |
| BsoBI | CYCGRG | 1 cut(s) | 13 |
| Bsp1286I | GDGCHC | 3 cut(s) | 55, 591, 636 |
| Bsp143I | GATC | 3 cut(s) | 23, 473, 597 |
| Bsp19I | CCATGG | 1 cut(s) | 66 |
| BspANI | GGCC | 2 cut(s) | 283, 481 |
| BsrDI | GCAATG | 1 cut(s) | 106 |
| BsrFI | RCCGGY | 1 cut(s) | 406 |
| BssAI | RCCGGY | 1 cut(s) | 406 |
| BssECI | CCNNGG | 1 cut(s) | 66 |
| BssMI | GATC | 3 cut(s) | 23, 473, 597 |
| BssT1I | CCWWGG | 1 cut(s) | 66 |
| BstC8I | GCNNGC | 1 cut(s) | 325 |
| BstDEI | CTNAG | 1 cut(s) | 358 |
| BstDSI | CCRYGG | 1 cut(s) | 66 |
| BstKTI | GATC | 3 cut(s) | 26, 476, 600 |
| BstMAI | GTCTC | 1 cut(s) | 564 |
| BstMBI | GATC | 3 cut(s) | 23, 473, 597 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 542, 631 |
| BstV1I | GCAGC | 3 cut(s) | 397, 523, 612 |
| BsuRI | GGCC | 2 cut(s) | 283, 481 |
| BtgI | CCRYGG | 1 cut(s) | 66 |
| BtsIMutI | CAGTG | 1 cut(s) | 634 |
| Cac8I | GCNNGC | 1 cut(s) | 325 |
| Cfr10I | RCCGGY | 1 cut(s) | 406 |
| Csp6I | GTAC | 2 cut(s) | 18, 404 |
| CviAII | CATG | 3 cut(s) | 67, 205, 592 |
| CviQI | GTAC | 2 cut(s) | 18, 404 |
| DdeI | CTNAG | 1 cut(s) | 358 |
| DpnI | GATC | 3 cut(s) | 25, 475, 599 |
| DpnII | GATC | 3 cut(s) | 23, 473, 597 |
| Ecl136II | GAGCTC | 1 cut(s) | 589 |
| Eco130I | CCWWGG | 1 cut(s) | 66 |
| Eco24I | GRGCYC | 1 cut(s) | 591 |
| Eco53kI | GAGCTC | 1 cut(s) | 589 |
| Eco57I | CTGAAG | 2 cut(s) | 443, 473 |
| Eco88I | CYCGRG | 1 cut(s) | 13 |
| EcoICRI | GAGCTC | 1 cut(s) | 589 |
| EcoRI | GAATTC | 1 cut(s) | 508 |
| EcoT14I | CCWWGG | 1 cut(s) | 66 |
| EcoT38I | GRGCYC | 1 cut(s) | 591 |
| ErhI | CCWWGG | 1 cut(s) | 66 |
| Esp3I | CGTCTC | 1 cut(s) | 564 |
| FaeI | CATG | 3 cut(s) | 70, 208, 595 |
| FaiI | YATR | 6 cut(s) | 68, 179, 206, 381, 581, 593 |
| FaqI | GGGAC | 1 cut(s) | 323 |
| FatI | CATG | 3 cut(s) | 66, 204, 591 |
| Fnu4HI | GCNGC | 3 cut(s) | 411, 537, 626 |
| FriOI | GRGCYC | 1 cut(s) | 591 |
| Fsp4HI | GCNGC | 3 cut(s) | 411, 537, 626 |
| FspBI | CTAG | 2 cut(s) | 21, 228 |
| GluI | GCNGC | 3 cut(s) | 411, 537, 626 |
| GsaI | CCCAGC | 1 cut(s) | 535 |
| HaeIII | GGCC | 2 cut(s) | 283, 481 |
| HapII | CCGG | 1 cut(s) | 407 |
| Hin1II | CATG | 3 cut(s) | 70, 208, 595 |
| HindIII | AAGCTT | 1 cut(s) | 455 |
| HinfI | GANTC | 7 cut(s) | 62, 101, 191, 302, 346, 442, 493 |
| HpaII | CCGG | 1 cut(s) | 407 |
| HphI | GGTGA | 1 cut(s) | 502 |
| Hpy166II | GTNNAC | 1 cut(s) | 266 |
| Hpy188I | TCNGA | 4 cut(s) | 28, 40, 121, 196 |
| Hpy188III | TCNNGA | 3 cut(s) | 247, 317, 421 |
| Hpy8I | GTNNAC | 1 cut(s) | 266 |
| HpyAV | CCTTC | 2 cut(s) | 128, 294 |
| HpyCH4IV | ACGT | 1 cut(s) | 573 |
| HpyCH4V | TGCA | 4 cut(s) | 239, 413, 539, 579 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 542, 631 |
| HpyF3I | CTNAG | 1 cut(s) | 358 |
| HpySE526I | ACGT | 1 cut(s) | 573 |
| Hsp92II | CATG | 3 cut(s) | 70, 208, 595 |
| Kzo9I | GATC | 3 cut(s) | 23, 473, 597 |
| LmnI | GCTCC | 1 cut(s) | 143 |
| Lsp1109I | GCAGC | 3 cut(s) | 397, 523, 612 |
| MaeI | CTAG | 2 cut(s) | 21, 228 |
| MaeII | ACGT | 1 cut(s) | 573 |
| MaeIII | GTNAC | 4 cut(s) | 200, 271, 361, 372 |
| MalI | GATC | 3 cut(s) | 25, 475, 599 |
| MboI | GATC | 3 cut(s) | 23, 473, 597 |
| MboII | GAAGA | 2 cut(s) | 173, 279 |
| MfeI | CAATTG | 1 cut(s) | 240 |
| MhlI | GDGCHC | 3 cut(s) | 55, 591, 636 |
| MluCI | AATT | 9 cut(s) | 115, 150, 180, 208, 216, 240, 255, 508, 614 |
| MnlI | CCTC | 3 cut(s) | 134, 291, 430 |
| MseI | TTAA | 4 cut(s) | 183, 312, 432, 465 |
| MspI | CCGG | 1 cut(s) | 407 |
| MunI | CAATTG | 1 cut(s) | 240 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 542, 631 |
| NcoI | CCATGG | 1 cut(s) | 66 |
| NdeII | GATC | 3 cut(s) | 23, 473, 597 |
| NlaIII | CATG | 3 cut(s) | 70, 208, 595 |
| NmuCI | GTSAC | 3 cut(s) | 200, 361, 372 |
| PaeR7I | CTCGAG | 1 cut(s) | 13 |
| PfeI | GAWTC | 7 cut(s) | 62, 101, 191, 302, 346, 442, 493 |
| PkrI | GCNGC | 3 cut(s) | 412, 538, 627 |
| Psp124BI | GAGCTC | 1 cut(s) | 591 |
| PspFI | CCCAGC | 1 cut(s) | 531 |
| PspXI | VCTCGAGB | 1 cut(s) | 13 |
| RsaI | GTAC | 2 cut(s) | 19, 405 |
| RsaNI | GTAC | 2 cut(s) | 18, 404 |
| SacI | GAGCTC | 1 cut(s) | 591 |
| SaqAI | TTAA | 4 cut(s) | 183, 312, 432, 465 |
| SatI | GCNGC | 3 cut(s) | 411, 537, 626 |
| Sau3AI | GATC | 3 cut(s) | 23, 473, 597 |
| ScaI | AGTACT | 1 cut(s) | 19 |
| SduI | GDGCHC | 3 cut(s) | 55, 591, 636 |
| Sfr274I | CTCGAG | 1 cut(s) | 13 |
| SlaI | CTCGAG | 1 cut(s) | 13 |
| SmlI | CTYRAG | 1 cut(s) | 13 |
| SmoI | CTYRAG | 1 cut(s) | 13 |
| Sse9I | AATT | 9 cut(s) | 115, 150, 180, 208, 216, 240, 255, 508, 614 |
| SspMI | CTAG | 2 cut(s) | 21, 228 |
| SstI | GAGCTC | 1 cut(s) | 591 |
| StyI | CCWWGG | 1 cut(s) | 66 |
| TaiI | ACGT | 1 cut(s) | 576 |
| TaqI | TCGA | 2 cut(s) | 14, 585 |
| TasI | AATT | 9 cut(s) | 115, 150, 180, 208, 216, 240, 255, 508, 614 |
| TatI | WGTACW | 1 cut(s) | 17 |
| TfiI | GAWTC | 7 cut(s) | 62, 101, 191, 302, 346, 442, 493 |
| Tru1I | TTAA | 4 cut(s) | 183, 312, 432, 465 |
| Tru9I | TTAA | 4 cut(s) | 183, 312, 432, 465 |
| TseFI | GTSAC | 3 cut(s) | 200, 361, 372 |
| TseI | GCWGC | 3 cut(s) | 410, 536, 625 |
| Tsp45I | GTSAC | 3 cut(s) | 200, 361, 372 |
| TspDTI | ATGAA | 4 cut(s) | 140, 221, 279, 418 |
| XapI | RAATTY | 1 cut(s) | 508 |
| XhoI | CTCGAG | 1 cut(s) | 13 |
| XspI | CTAG | 2 cut(s) | 21, 228 |
| ZrmI | AGTACT | 1 cut(s) | 19 |