Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000173.1

Orthogroup ID

OG0000156

Physical Location & Seq

Genomic Coordinates Forward (+)

46467 .. 48475

Gene Structure 2009 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000173.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

atgggttatgtccctattcaatttcacgcacaaattagggtttcccaagtcggaattgaacaattccaggcagaaattgtagatcacgaagtgaatcgcaaattagggtttcccggggtcgtcggaaagttgaagactttggggcagaggaaacagagagactctcagtcccagagaaacggaaccgagaatggggcaggaattgaacaattgcagatcgcgaagcaaatgggcaaattaggatttcgggaaaaacaaagacttggaacaatctgggggattccggaggactttgtgtctaaatatggaaaagatctatcaaattcagcaacttttaggcttccatgtggttcagaatgggaagtaggattgacaaggtacaatggtgaggtttggtttaagaagggttggccagacttcttgaagttttactctcttggctacaatgacctgctggttttcggatatgaagggaagtctagatttcaggtttccatatttgataaaagcacaattgagattgagtatcccgttacagtgcctaacattgaagaaagtgatgaacatgatgattcctctgttgaaatcttggatgattttccactgtatctaagaaaagcaagagagacatctcgactaccaggtcctcagcctcgcatgaaaaacagaacaggttcaagtggtactgcaaaaatcaatctcagttttgagaagtctacgaaaaagaaagagacacatgggtccaaatcaggaagaaaaagtacgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

255

Amino Acids

28.92

Weight (kDa)

9.31

Isoelectric Point (pI)

35.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000156)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49475 AT3G18960 AT3G18960 AT3G18960 AT4G01580
fragaria_vesca	FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14670 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14690 FvH4_1g14700 FvH4_1g29250 FvH4_6g29400 FvH4_6g38681 FvH4_6g38690 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_7g02010
malus_domestica	MD00G1020600.v1.1 MD00G1022000.v1.1 MD00G1022100.v1.1 MD02G1159700.v1.1 MD02G1159800.v1.1 MD02G1159900.v1.1 MD02G1160000.v1.1 MD02G1160300.v1.1 MD15G1274100.v1.1 MD15G1274200.v1.1 MD15G1274400.v1.1 MD15G1302000.v1.1
prunus_persica	Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.3G083400_v2.0.a1 Prupe.6G229600_v2.0.a1 Prupe.7G039600_v2.0.a1 Prupe.7G044500_v2.0.a1 Prupe.7G044800_v2.0.a1 Prupe.7G143100_v2.0.a1 Prupe.7G143500_v2.0.a1 Prupe.7G143600_v2.0.a1 Prupe.7G143700_v2.0.a1 Prupe.7G143800_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.8G072800_v2.0.a1 Prupe.8G072800_v2.0.a1
pyrus_communis	pycom02g12620 pycom02g12630 pycom15g23750 pycom15g26490 pycom17g21160
rosa_chinensis	RchiOBHm_Chr2g0103421 RchiOBHm_Chr2g0103431 RchiOBHm_Chr2g0103441 RchiOBHm_Chr2g0103491 RchiOBHm_Chr2g0103501 RchiOBHm_Chr2g0103521 RchiOBHm_Chr2g0103541 RchiOBHm_Chr2g0103551 RchiOBHm_Chr2g0103561 RchiOBHm_Chr2g0134821 RchiOBHm_Chr2g0152161 RchiOBHm_Chr2g0152181 RchiOBHm_Chr7g0227261 RchiOBHm_Chr7g0227351 RchiOBHm_Chr7g0227431
rosa_laevigata	RLG00000001649 RLG00000001653 RLG00000001659 RLG00000017235 RLG00000017236 RLG00000017240 RLG00000017241 RLG00000017242 RLG00000017243 RLG00000017244 RLG00000017349 RLG00000019424 RLG00000020614 RLG00000020615
rosa_multiflora	Rmu_co8247875.1_g000001 Rmu_co8429551.1_g000001 Rmu_sc0000173.1_g000009 Rmu_sc0000718.1_g000004 Rmu_sc0001530.1_g000001 Rmu_sc0001530.1_g000002 Rmu_sc0001530.1_g000004 Rmu_sc0001530.1_g000005 Rmu_sc0001852.1_g000023 Rmu_sc0001852.1_g000024 Rmu_sc0002434.1_g000001 Rmu_sc0002434.1_g000002 Rmu_sc0003043.1_g000016 Rmu_sc0003153.1_g000005 Rmu_sc0011039.1_g000001 Rmu_sc0031822.1_g000001
rosa_roxburghii	Rroxscaffold_2G00095860 Rroxscaffold_2G00095870 Rroxscaffold_2G00109720 Rroxscaffold_2G00139530 Rroxscaffold_2G00139550 Rroxscaffold_2G00139570 Rroxscaffold_2G00139580 Rroxscaffold_2G00139630 Rroxscaffold_2G00139640 Rroxscaffold_4G00328430 Rroxscaffold_4G00328440 Rroxscaffold_4G00328450
rosa_rugosa	Rorug02G0114900 Rorug02G0115000 Rorug02G0115000 Rorug02G0115200 Rorug02G0115300 Rorug02G0115400 Rorug02G0115500 Rorug02G0115600 Rorug02G0115600 Rorug02G0115600 Rorug02G0115700 Rorug02G0320300 Rorug02G0431300 Rorug02G0431300 Rorug06G0028200 Rorug07G0241300
rosa_samantha	Rh2AG163200 Rh2AG163300 Rh2AG163700 Rh2AG163800 Rh2AG163900 Rh2AG164000 Rh2AG373400 Rh2AG492600 Rh2BG170300 Rh2BG170400 Rh2BG170800 Rh2BG170900 Rh2BG171000 Rh2BG171100 Rh2BG171200 Rh2BG377800 Rh2BG505000 Rh2BG505100 Rh2BG505200 Rh2CG170300 Rh2CG170700 Rh2CG479000 Rh2DG169100 Rh2DG169200 Rh2DG169300 Rh2DG516400 Rh7AG391200 Rh7BG376200 Rh7CG410200 Rh7CG411500 Rh7CG412000 Rh7CG412700 Rh7DG388800
rosa_wichuraiana	Rw2G012830 Rw2G012840 Rw2G012870 Rw2G012880 Rw2G012890 Rw2G012900 Rw2G030310 Rw2G040470 Rw2G040480 Rw7G032720 Rw7G032730 Rw7G032750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	642, 739
Acc36I	ACCTGC	1 cut(s)	459
AccI	GTMKAC	1 cut(s)	716
AccII	CGCG	1 cut(s)	221
AccIII	TCCGGA	1 cut(s)	283
AcoI	YGGCCR	1 cut(s)	410
AcsI	RAATTY	1 cut(s)	322
AdeI	CACNNNGTG	1 cut(s)	91
AfaI	GTAC	3 cut(s)	380, 685, 763
AfiI	CCNNNNNNNGG	1 cut(s)	192
AgsI	TTSAA	8 cut(s)	20, 59, 133, 206, 424, 551, 584, 678
AhdI	GACNNNNNGTC	2 cut(s)	166, 295
AjnI	CCWGG	2 cut(s)	66, 640
Alw26I	GTCTC	3 cut(s)	153, 620, 725
Ama87I	CYCGRG	1 cut(s)	113
Aor13HI	TCCGGA	1 cut(s)	283
AoxI	GGCC	1 cut(s)	410
ApoI	RAATTY	1 cut(s)	322
Asp700I	GAANNNNTTC	1 cut(s)	673
AspS9I	GGNCC	2 cut(s)	644, 741
AsuC2I	CCSGG	2 cut(s)	114, 115
AsuHPI	GGTGA	1 cut(s)	398
AvaI	CYCGRG	1 cut(s)	113
AvaII	GGWCC	2 cut(s)	644, 741
BaeI	ACNNNNGTAYC	2 cut(s)	370, 403
BalI	TGGCCA	1 cut(s)	412
BarI	GAAGNNNNNNTAC	1 cut(s)	745
BbsI	GAAGAC	1 cut(s)	140
BbvCI	CCTCAGC	1 cut(s)	648
BciT130I	CCWGG	2 cut(s)	68, 642
BciVI	GTATCC	1 cut(s)	537
BcnI	CCSGG	2 cut(s)	114, 115
BcoDI	GTCTC	3 cut(s)	153, 620, 725
BfaI	CTAG	1 cut(s)	480
BfuAI	ACCTGC	1 cut(s)	459
BfuI	GTATCC	1 cut(s)	537
BglII	AGATCT	1 cut(s)	313
Bme1390I	CCNGG	4 cut(s)	68, 114, 115, 642
Bme18I	GGWCC	2 cut(s)	644, 741
BmeRI	GACNNNNNGTC	2 cut(s)	166, 295
BmeT110I	CYCGRG	1 cut(s)	113
BmgT120I	GGNCC	2 cut(s)	644, 741
BmiI	GGNNCC	2 cut(s)	184, 742
BmrFI	CCNGG	4 cut(s)	68, 114, 115, 642
BpiI	GAAGAC	1 cut(s)	140
BplI	GAGNNNNNCTC	2 cut(s)	148, 180
Bpu10I	CCTNAGC	1 cut(s)	648
BpuMI	CCSGG	2 cut(s)	114, 115
BsaAI	YACGTR	1 cut(s)	765
BsaJI	CCNNGG	2 cut(s)	113, 114
BsaWI	WCCGGW	1 cut(s)	283
Bsc4I	CCNNNNNNNGG	1 cut(s)	192
BseAI	TCCGGA	1 cut(s)	283
BseBI	CCWGG	2 cut(s)	68, 642
BseDI	CCNNGG	2 cut(s)	113, 114
BseGI	GGATG	1 cut(s)	598
BseLI	CCNNNNNNNGG	1 cut(s)	192
BseMII	CTCAG	3 cut(s)	179, 662, 715
Bsh1236I	CGCG	1 cut(s)	221
BshFI	GGCC	1 cut(s)	412
BsiHKCI	CYCGRG	1 cut(s)	113
BsiSI	CCGG	2 cut(s)	114, 284
BslFI	GGGAC	1 cut(s)	154
BslI	CCNNNNNNNGG	1 cut(s)	192
BsmAI	GTCTC	3 cut(s)	153, 620, 725
BsmFI	GGGAC	1 cut(s)	154
BsnI	GGCC	1 cut(s)	412
BsoBI	CYCGRG	1 cut(s)	113
Bsp13I	TCCGGA	1 cut(s)	283
Bsp143I	GATC	3 cut(s)	82, 216, 313
Bsp68I	TCGCGA	1 cut(s)	221
BspANI	GGCC	1 cut(s)	412
BspCNI	CTCAG	3 cut(s)	178, 661, 714
BspEI	TCCGGA	1 cut(s)	283
BspFNI	CGCG	1 cut(s)	221
BspLI	GGNNCC	2 cut(s)	184, 742
BspMI	ACCTGC	1 cut(s)	459
BssECI	CCNNGG	2 cut(s)	113, 114
BssMI	GATC	3 cut(s)	82, 216, 313
Bst2UI	CCWGG	2 cut(s)	68, 642
Bst4CI	ACNGT	2 cut(s)	538, 606
BstBAI	YACGTR	1 cut(s)	765
BstDEI	CTNAG	4 cut(s)	165, 611, 648, 701
BstF5I	GGATG	1 cut(s)	598
BstFNI	CGCG	1 cut(s)	221
BstKTI	GATC	3 cut(s)	85, 219, 316
BstMAI	GTCTC	3 cut(s)	153, 620, 725
BstMBI	GATC	3 cut(s)	82, 216, 313
BstNI	CCWGG	2 cut(s)	68, 642
BstSCI	CCNGG	4 cut(s)	66, 112, 113, 640
BstSNI	TACGTA	1 cut(s)	765
BstUI	CGCG	1 cut(s)	221
BstV2I	GAAGAC	1 cut(s)	140
BstX2I	RGATCY	1 cut(s)	313
BstYI	RGATCY	1 cut(s)	313
BsuI	GTATCC	1 cut(s)	537
BsuRI	GGCC	1 cut(s)	412
BtsCI	GGATG	1 cut(s)	598
BtsIMutI	CAGTG	2 cut(s)	543, 602
BtuMI	TCGCGA	1 cut(s)	221
BveI	ACCTGC	1 cut(s)	459
Cfr13I	GGNCC	2 cut(s)	644, 741
Cfr9I	CCCGGG	1 cut(s)	113
CsiI	ACCWGGT	1 cut(s)	640
Csp6I	GTAC	3 cut(s)	379, 684, 762
CviAII	CATG	4 cut(s)	345, 566, 658, 737
CviJI	RGCY	4 cut(s)	340, 412, 441, 652
CviKI_1	RGCY	4 cut(s)	340, 412, 441, 652
CviQI	GTAC	3 cut(s)	379, 684, 762
DdeI	CTNAG	4 cut(s)	165, 611, 648, 701
DpnI	GATC	3 cut(s)	84, 218, 315
DpnII	GATC	3 cut(s)	82, 216, 313
DraIII	CACNNNGTG	1 cut(s)	91
DrdI	GACNNNNNNGTC	2 cut(s)	642, 739
DriI	GACNNNNNGTC	2 cut(s)	166, 295
DseDI	GACNNNNNNGTC	2 cut(s)	642, 739
EaeI	YGGCCR	1 cut(s)	410
Eam1105I	GACNNNNNGTC	2 cut(s)	166, 295
Eco105I	TACGTA	1 cut(s)	765
Eco47I	GGWCC	2 cut(s)	644, 741
Eco88I	CYCGRG	1 cut(s)	113
EcoO109I	RGGNCCY	1 cut(s)	644
EcoRII	CCWGG	2 cut(s)	66, 640
FaeI	CATG	4 cut(s)	348, 569, 661, 740
FaiI	YATR	8 cut(s)	9, 306, 346, 468, 497, 567, 659, 738
FaqI	GGGAC	1 cut(s)	154
FatI	CATG	4 cut(s)	344, 565, 657, 736
FblI	GTMKAC	1 cut(s)	716
FokI	GGATG	1 cut(s)	605
FspBI	CTAG	1 cut(s)	480
HaeIII	GGCC	1 cut(s)	412
HapII	CCGG	2 cut(s)	114, 284
Hin1II	CATG	4 cut(s)	348, 569, 661, 740
HinfI	GANTC	4 cut(s)	94, 161, 280, 572
HpaII	CCGG	2 cut(s)	114, 284
HphI	GGTGA	1 cut(s)	398
Hpy166II	GTNNAC	1 cut(s)	717
Hpy188I	TCNGA	4 cut(s)	53, 125, 355, 464
Hpy188III	TCNNGA	8 cut(s)	86, 220, 248, 284, 421, 480, 633, 750
Hpy8I	GTNNAC	1 cut(s)	717
Hpy99I	CGWCG	1 cut(s)	125
HpyAV	CCTTC	2 cut(s)	397, 464
HpyCH4III	ACNGT	2 cut(s)	538, 606
HpyCH4IV	ACGT	1 cut(s)	764
HpyCH4V	TGCA	2 cut(s)	214, 689
HpyF3I	CTNAG	4 cut(s)	165, 611, 648, 701
HpySE526I	ACGT	1 cut(s)	764
Hsp92II	CATG	4 cut(s)	348, 569, 661, 740
Kpn2I	TCCGGA	1 cut(s)	283
Kzo9I	GATC	3 cut(s)	82, 216, 313
MabI	ACCWGGT	1 cut(s)	640
MaeI	CTAG	1 cut(s)	480
MaeII	ACGT	1 cut(s)	764
MaeIII	GTNAC	1 cut(s)	532
MalI	GATC	3 cut(s)	84, 218, 315
MboI	GATC	3 cut(s)	82, 216, 313
MboII	GAAGA	3 cut(s)	145, 563, 765
MfeI	CAATTG	2 cut(s)	209, 513
MflI	RGATCY	1 cut(s)	313
MlsI	TGGCCA	1 cut(s)	412
MluNI	TGGCCA	1 cut(s)	412
MlyI	GAGTC	1 cut(s)	155
MmeI	TCCRAC	2 cut(s)	31, 103
MnlI	CCTC	6 cut(s)	141, 280, 382, 586, 657, 663
Mox20I	TGGCCA	1 cut(s)	412
MroI	TCCGGA	1 cut(s)	283
MroXI	GAANNNNTTC	1 cut(s)	673
MscI	TGGCCA	1 cut(s)	412
MseI	TTAA	1 cut(s)	399
Msp20I	TGGCCA	1 cut(s)	412
MspI	CCGG	2 cut(s)	114, 284
MspR9I	CCNGG	4 cut(s)	68, 114, 115, 642
MunI	CAATTG	2 cut(s)	209, 513
MvaI	CCWGG	2 cut(s)	68, 642
MvnI	CGCG	1 cut(s)	221
NciI	CCSGG	2 cut(s)	114, 115
NdeII	GATC	3 cut(s)	82, 216, 313
NlaIII	CATG	4 cut(s)	348, 569, 661, 740
NlaIV	GGNNCC	2 cut(s)	184, 742
NruI	TCGCGA	1 cut(s)	221
PdmI	GAANNNNTTC	1 cut(s)	673
PfeI	GAWTC	3 cut(s)	94, 280, 572
PleI	GAGTC	1 cut(s)	155
PpsI	GAGTC	1 cut(s)	155
Ppu21I	YACGTR	1 cut(s)	765
PpuMI	RGGWCCY	1 cut(s)	644
Psp5II	RGGWCCY	1 cut(s)	644
Psp6I	CCWGG	2 cut(s)	66, 640
PspGI	CCWGG	2 cut(s)	66, 640
PspN4I	GGNNCC	2 cut(s)	184, 742
PspPI	GGNCC	2 cut(s)	644, 741
PspPPI	RGGWCCY	1 cut(s)	644
PsuI	RGATCY	1 cut(s)	313
RruI	TCGCGA	1 cut(s)	221
RsaI	GTAC	3 cut(s)	380, 685, 763
RsaNI	GTAC	3 cut(s)	379, 684, 762
SaqAI	TTAA	1 cut(s)	399
Sau3AI	GATC	3 cut(s)	82, 216, 313
Sau96I	GGNCC	2 cut(s)	644, 741
SchI	GAGTC	1 cut(s)	155
ScrFI	CCNGG	4 cut(s)	68, 114, 115, 642
SetI	ASST	7 cut(s)	380, 393, 453, 492, 646, 676, 767
SexAI	ACCWGGT	1 cut(s)	640
SinI	GGWCC	2 cut(s)	644, 741
SmaI	CCCGGG	1 cut(s)	115
SnaBI	TACGTA	1 cut(s)	765
SspMI	CTAG	1 cut(s)	480
StyD4I	CCNGG	4 cut(s)	66, 112, 113, 640
TaaI	ACNGT	2 cut(s)	538, 606
TaiI	ACGT	1 cut(s)	767
TaqI	TCGA	1 cut(s)	634
TfiI	GAWTC	3 cut(s)	94, 280, 572
Tru1I	TTAA	1 cut(s)	399
Tru9I	TTAA	1 cut(s)	399
TscAI	CASTG	2 cut(s)	543, 609
TspDTI	ATGAA	3 cut(s)	483, 576, 674
TspGWI	ACGGA	1 cut(s)	195
TspMI	CCCGGG	1 cut(s)	113
TspRI	CASTG	2 cut(s)	543, 609
VpaK11BI	GGWCC	2 cut(s)	644, 741
XapI	RAATTY	1 cut(s)	322
XbaI	TCTAGA	1 cut(s)	479
XmaI	CCCGGG	1 cut(s)	113
XmiI	GTMKAC	1 cut(s)	716
XmnI	GAANNNNTTC	1 cut(s)	673
XspI	CTAG	1 cut(s)	480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.