Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000156

Physical Location & Seq

Genomic Coordinates Reverse (-)

9833520 .. 9834740

Gene Structure 1221 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0115300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGATATCACTGTCGACTGGTCCAATCTTCCAGTCGAACTCTGGCCACTGATCGTAGAAAAGCTCAAGCTCCGCATCGAGTACGTCTCTCCAATTCCGCAGCGTTTGTCATTCATGGCGTTCTTGTTTGCCTCGCTTCCACCCTTCCCTTCCTCCAAAATTCCCTCTCCCATTCTCCGATGGACCCACCTCCTTCCTCGCCCAAAACACCGTCTACCTCCTCCAAACCCCCTCCATGTCATCACTGGCGCCGCCGTCTGGAGGTTGGTTGGTCAAGGTCAAATAGTGCGACAGAATGATTCTTCGAAATCCGATCGCCTCCCGGCGAATCAGGCGGCACACTTTCTAGCAAGGAATGCGCTTATGGTTCCCGACTTTCATGTTTGGGTCAATGACAGCCCTCATTGGCTGTCTTTTATTGTAACCTCTGATAAAGTGATTTTAATGCCTGCTGAGATTGTTGATTGTGCTATTCTGGTTATCTCTGATAAAGGAAATTTGGGTTTTGTTAAAAGTGGAGATGAGAAACTCACACAGTTTAGTAATGGAGGTTTTGTTTTTGATGATGTTATTGTTTATAAGGGTCAGCCATATGTGGTGGATAGCTTAGGTTGTGTTTTTAGGATTGATGTGTCTTCAGAAGCGATGGTGAAGATTTCGTCGAAAGTGGTTGGTTTTGGTGGGAGGAAGCATTTGGTGGAGTCTTGTGGAGAGCTTTATGTGGTCGATAGGTATTTTGATCAAGAACAAAATAAGCAAGAAGCACTACAAGAGAAAATAGCCAAAGCGAGGAATTTCATTGTGACAACTCAAAATTCGTCGCAAAATCTTGGCAAATACGAGGAAATTTCAGTTGTCACACATGATCCCATCGACGACAACCAATTTGTCGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

298

Amino Acids

33.49

Weight (kDa)

6.45

Isoelectric Point (pI)

38.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	114 - 256	6.5e-15	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000156)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49475 AT3G18960 AT3G18960 AT3G18960 AT4G01580
fragaria_vesca	FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14670 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14690 FvH4_1g14700 FvH4_1g29250 FvH4_6g29400 FvH4_6g38681 FvH4_6g38690 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_7g02010
malus_domestica	MD00G1020600.v1.1 MD00G1022000.v1.1 MD00G1022100.v1.1 MD02G1159700.v1.1 MD02G1159800.v1.1 MD02G1159900.v1.1 MD02G1160000.v1.1 MD02G1160300.v1.1 MD15G1274100.v1.1 MD15G1274200.v1.1 MD15G1274400.v1.1 MD15G1302000.v1.1
prunus_persica	Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.3G083400_v2.0.a1 Prupe.6G229600_v2.0.a1 Prupe.7G039600_v2.0.a1 Prupe.7G044500_v2.0.a1 Prupe.7G044800_v2.0.a1 Prupe.7G143100_v2.0.a1 Prupe.7G143500_v2.0.a1 Prupe.7G143600_v2.0.a1 Prupe.7G143700_v2.0.a1 Prupe.7G143800_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.8G072800_v2.0.a1 Prupe.8G072800_v2.0.a1
pyrus_communis	pycom02g12620 pycom02g12630 pycom15g23750 pycom15g26490 pycom17g21160
rosa_chinensis	RchiOBHm_Chr2g0103421 RchiOBHm_Chr2g0103431 RchiOBHm_Chr2g0103441 RchiOBHm_Chr2g0103491 RchiOBHm_Chr2g0103501 RchiOBHm_Chr2g0103521 RchiOBHm_Chr2g0103541 RchiOBHm_Chr2g0103551 RchiOBHm_Chr2g0103561 RchiOBHm_Chr2g0134821 RchiOBHm_Chr2g0152161 RchiOBHm_Chr2g0152181 RchiOBHm_Chr7g0227261 RchiOBHm_Chr7g0227351 RchiOBHm_Chr7g0227431
rosa_laevigata	RLG00000001649 RLG00000001653 RLG00000001659 RLG00000017235 RLG00000017236 RLG00000017240 RLG00000017241 RLG00000017242 RLG00000017243 RLG00000017244 RLG00000017349 RLG00000019424 RLG00000020614 RLG00000020615
rosa_multiflora	Rmu_co8247875.1_g000001 Rmu_co8429551.1_g000001 Rmu_sc0000173.1_g000009 Rmu_sc0000718.1_g000004 Rmu_sc0001530.1_g000001 Rmu_sc0001530.1_g000002 Rmu_sc0001530.1_g000004 Rmu_sc0001530.1_g000005 Rmu_sc0001852.1_g000023 Rmu_sc0001852.1_g000024 Rmu_sc0002434.1_g000001 Rmu_sc0002434.1_g000002 Rmu_sc0003043.1_g000016 Rmu_sc0003153.1_g000005 Rmu_sc0011039.1_g000001 Rmu_sc0031822.1_g000001
rosa_roxburghii	Rroxscaffold_2G00095860 Rroxscaffold_2G00095870 Rroxscaffold_2G00109720 Rroxscaffold_2G00139530 Rroxscaffold_2G00139550 Rroxscaffold_2G00139570 Rroxscaffold_2G00139580 Rroxscaffold_2G00139630 Rroxscaffold_2G00139640 Rroxscaffold_4G00328430 Rroxscaffold_4G00328440 Rroxscaffold_4G00328450
rosa_rugosa	Rorug02G0114900 Rorug02G0115000 Rorug02G0115000 Rorug02G0115200 Rorug02G0115300 Rorug02G0115400 Rorug02G0115500 Rorug02G0115600 Rorug02G0115600 Rorug02G0115600 Rorug02G0115700 Rorug02G0320300 Rorug02G0431300 Rorug02G0431300 Rorug06G0028200 Rorug07G0241300
rosa_samantha	Rh2AG163200 Rh2AG163300 Rh2AG163700 Rh2AG163800 Rh2AG163900 Rh2AG164000 Rh2AG373400 Rh2AG492600 Rh2BG170300 Rh2BG170400 Rh2BG170800 Rh2BG170900 Rh2BG171000 Rh2BG171100 Rh2BG171200 Rh2BG377800 Rh2BG505000 Rh2BG505100 Rh2BG505200 Rh2CG170300 Rh2CG170700 Rh2CG479000 Rh2DG169100 Rh2DG169200 Rh2DG169300 Rh2DG516400 Rh7AG391200 Rh7BG376200 Rh7CG410200 Rh7CG411500 Rh7CG412000 Rh7CG412700 Rh7DG388800
rosa_wichuraiana	Rw2G012830 Rw2G012840 Rw2G012870 Rw2G012880 Rw2G012890 Rw2G012900 Rw2G030310 Rw2G040470 Rw2G040480 Rw7G032720 Rw7G032730 Rw7G032750

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	579
AccB1I	GGYRCC	1 cut(s)	248
AccI	GTMKAC	2 cut(s)	15, 214
AciI	CCGC	4 cut(s)	73, 98, 252, 335
AclWI	GGATC	1 cut(s)	860
AcoI	YGGCCR	1 cut(s)	44
AcsI	RAATTY	5 cut(s)	159, 496, 793, 814, 846
AcuI	CTGAAG	1 cut(s)	621
AcyI	GRCGYC	1 cut(s)	249
AfaI	GTAC	1 cut(s)	83
AfiI	CCNNNNNNNGG	3 cut(s)	258, 261, 789
AluBI	AGCT	4 cut(s)	64, 70, 606, 715
AluI	AGCT	4 cut(s)	64, 70, 606, 715
Alw26I	GTCTC	1 cut(s)	91
AlwI	GGATC	1 cut(s)	860
AoxI	GGCC	1 cut(s)	44
ApeKI	GCWGC	1 cut(s)	100
ApoI	RAATTY	5 cut(s)	159, 496, 793, 814, 846
ArsI	GACNNNNNNTTYG	1 cut(s)	869
AspLEI	GCGC	2 cut(s)	251, 361
AspS9I	GGNCC	2 cut(s)	21, 183
AsuC2I	CCSGG	1 cut(s)	323
AsuHPI	GGTGA	1 cut(s)	661
AsuII	TTCGAA	1 cut(s)	305
AvaII	GGWCC	2 cut(s)	21, 183
BalI	TGGCCA	1 cut(s)	46
BanI	GGYRCC	1 cut(s)	248
BbsI	GAAGAC	1 cut(s)	627
BbvI	GCAGC	1 cut(s)	112
BccI	CCATC	3 cut(s)	174, 640, 878
BceAI	ACGGC	1 cut(s)	239
BclI	TGATCA	1 cut(s)	739
BcnI	CCSGG	1 cut(s)	323
BcoDI	GTCTC	1 cut(s)	91
BfaI	CTAG	1 cut(s)	347
BfoI	RGCGCY	1 cut(s)	252
BisI	GCNGC	3 cut(s)	101, 252, 336
BlsI	GCNGC	3 cut(s)	102, 253, 337
Bme1390I	CCNGG	1 cut(s)	323
Bme18I	GGWCC	2 cut(s)	21, 183
BmgT120I	GGNCC	2 cut(s)	21, 183
BmiI	GGNNCC	3 cut(s)	185, 250, 369
BmrFI	CCNGG	1 cut(s)	323
BmsI	GCATC	1 cut(s)	84
BpiI	GAAGAC	1 cut(s)	627
BplI	GAGNNNNNCTC	2 cut(s)	71, 103
BpmI	CTGGAG	1 cut(s)	280
Bpu10I	CCTNAGC	1 cut(s)	607
Bpu14I	TTCGAA	1 cut(s)	305
BpuEI	CTTGAG	1 cut(s)	50
BpuMI	CCSGG	1 cut(s)	323
BsaHI	GRCGYC	1 cut(s)	249
BsaXI	ACNNNNNCTCC	2 cut(s)	540, 570
Bsc4I	CCNNNNNNNGG	3 cut(s)	258, 261, 789
Bse1I	ACTGG	3 cut(s)	23, 32, 250
BseLI	CCNNNNNNNGG	3 cut(s)	258, 261, 789
BseMII	CTCAG	1 cut(s)	444
BseNI	ACTGG	3 cut(s)	23, 32, 250
BseRI	GAGGAG	1 cut(s)	210
BseXI	GCAGC	1 cut(s)	112
Bsh1285I	CGRYCG	1 cut(s)	316
BshFI	GGCC	1 cut(s)	46
BshNI	GGYRCC	1 cut(s)	248
BsiEI	CGRYCG	1 cut(s)	316
BsiSI	CCGG	1 cut(s)	323
BslI	CCNNNNNNNGG	3 cut(s)	258, 261, 789
BsmAI	GTCTC	1 cut(s)	91
BsmBI	CGTCTC	1 cut(s)	91
BsmI	GAATGC	1 cut(s)	361
BsnI	GGCC	1 cut(s)	46
Bsp119I	TTCGAA	1 cut(s)	305
Bsp143I	GATC	4 cut(s)	51, 313, 739, 865
BspACI	CCGC	4 cut(s)	73, 98, 252, 335
BspANI	GGCC	1 cut(s)	46
BspCNI	CTCAG	1 cut(s)	445
BspLI	GGNNCC	3 cut(s)	185, 250, 369
BspPI	GGATC	1 cut(s)	860
BspT104I	TTCGAA	1 cut(s)	305
BspT107I	GGYRCC	1 cut(s)	248
BsrI	ACTGG	3 cut(s)	23, 32, 250
BssMI	GATC	4 cut(s)	51, 313, 739, 865
BssNI	GRCGYC	1 cut(s)	249
Bst4CI	ACNGT	3 cut(s)	13, 212, 537
BstACI	GRCGYC	1 cut(s)	249
BstAPI	GCANNNNNTGC	1 cut(s)	356
BstBI	TTCGAA	1 cut(s)	305
BstC8I	GCNNGC	1 cut(s)	450
BstDEI	CTNAG	2 cut(s)	453, 607
BstH2I	RGCGCY	1 cut(s)	252
BstHHI	GCGC	2 cut(s)	251, 361
BstKTI	GATC	4 cut(s)	54, 316, 742, 868
BstMAI	GTCTC	1 cut(s)	91
BstMBI	GATC	4 cut(s)	51, 313, 739, 865
BstMCI	CGRYCG	1 cut(s)	316
BstMWI	GCNNNNNNNGC	2 cut(s)	332, 356
BstSCI	CCNGG	1 cut(s)	321
BstV1I	GCAGC	1 cut(s)	112
BstV2I	GAAGAC	1 cut(s)	627
BsuRI	GGCC	1 cut(s)	46
BtgZI	GCGATG	1 cut(s)	659
BtsIMutI	CAGTG	3 cut(s)	9, 47, 243
Cac8I	GCNNGC	1 cut(s)	450
CfoI	GCGC	2 cut(s)	251, 361
Cfr13I	GGNCC	2 cut(s)	21, 183
Csp6I	GTAC	1 cut(s)	82
CviAII	CATG	4 cut(s)	115, 236, 380, 863
CviJI	RGCY	9 cut(s)	46, 64, 70, 399, 409, 589, 606, 715, 782
CviKI_1	RGCY	9 cut(s)	46, 64, 70, 399, 409, 589, 606, 715, 782
CviQI	GTAC	1 cut(s)	82
DdeI	CTNAG	2 cut(s)	453, 607
DinI	GGCGCC	1 cut(s)	250
DpnI	GATC	4 cut(s)	53, 315, 741, 867
DpnII	GATC	4 cut(s)	51, 313, 739, 865
EaeI	YGGCCR	1 cut(s)	44
Eco32I	GATATC	1 cut(s)	7
Eco47I	GGWCC	2 cut(s)	21, 183
Eco57I	CTGAAG	1 cut(s)	621
EcoRV	GATATC	1 cut(s)	7
EgeI	GGCGCC	1 cut(s)	250
EheI	GGCGCC	1 cut(s)	250
Esp3I	CGTCTC	1 cut(s)	91
FaeI	CATG	4 cut(s)	118, 239, 383, 866
FatI	CATG	4 cut(s)	114, 235, 379, 862
FauNDI	CATATG	1 cut(s)	592
FbaI	TGATCA	1 cut(s)	739
FblI	GTMKAC	2 cut(s)	15, 214
Fnu4HI	GCNGC	3 cut(s)	101, 252, 336
Fsp4HI	GCNGC	3 cut(s)	101, 252, 336
FspBI	CTAG	1 cut(s)	347
GlaI	GCGC	2 cut(s)	250, 360
GluI	GCNGC	3 cut(s)	101, 252, 336
GsuI	CTGGAG	1 cut(s)	280
HaeII	RGCGCY	1 cut(s)	252
HaeIII	GGCC	1 cut(s)	46
HapII	CCGG	1 cut(s)	323
HhaI	GCGC	2 cut(s)	251, 361
Hin1I	GRCGYC	1 cut(s)	249
Hin1II	CATG	4 cut(s)	118, 239, 383, 866
Hin6I	GCGC	2 cut(s)	249, 359
HinP1I	GCGC	2 cut(s)	249, 359
HincII	GTYRAC	1 cut(s)	16
HindII	GTYRAC	1 cut(s)	16
HinfI	GANTC	3 cut(s)	299, 328, 701
HpaII	CCGG	1 cut(s)	323
HphI	GGTGA	1 cut(s)	661
Hpy166II	GTNNAC	2 cut(s)	16, 215
Hpy188I	TCNGA	5 cut(s)	179, 313, 430, 487, 640
Hpy188III	TCNNGA	3 cut(s)	259, 371, 743
Hpy8I	GTNNAC	2 cut(s)	16, 215
Hpy99I	CGWCG	3 cut(s)	664, 823, 878
HpyAV	CCTTC	3 cut(s)	154, 159, 203
HpyCH4III	ACNGT	3 cut(s)	13, 212, 537
HpyCH4IV	ACGT	1 cut(s)	84
HpyF10VI	GCNNNNNNNGC	2 cut(s)	332, 356
HpyF3I	CTNAG	2 cut(s)	453, 607
HpySE526I	ACGT	1 cut(s)	84
Hsp92I	GRCGYC	1 cut(s)	249
Hsp92II	CATG	4 cut(s)	118, 239, 383, 866
HspAI	GCGC	2 cut(s)	249, 359
KasI	GGCGCC	1 cut(s)	248
Ksp22I	TGATCA	1 cut(s)	739
Kzo9I	GATC	4 cut(s)	51, 313, 739, 865
LmnI	GCTCC	1 cut(s)	75
LpnPI	CCDG	9 cut(s)	4, 28, 45, 231, 244, 317, 336, 461, 462
Lsp1109I	GCAGC	1 cut(s)	112
LweI	GCATC	1 cut(s)	84
MaeI	CTAG	1 cut(s)	347
MaeII	ACGT	1 cut(s)	84
MaeIII	GTNAC	3 cut(s)	421, 802, 856
MalI	GATC	4 cut(s)	53, 315, 741, 867
MboI	GATC	4 cut(s)	51, 313, 739, 865
MboII	GAAGA	4 cut(s)	20, 294, 627, 664
MlsI	TGGCCA	1 cut(s)	46
MluCI	AATT	7 cut(s)	93, 159, 496, 793, 814, 846, 884
MluNI	TGGCCA	1 cut(s)	46
Mly113I	GGCGCC	1 cut(s)	249
MlyI	GAGTC	1 cut(s)	710
Mox20I	TGGCCA	1 cut(s)	46
MscI	TGGCCA	1 cut(s)	46
MseI	TTAA	2 cut(s)	443, 510
Msp20I	TGGCCA	1 cut(s)	46
MspI	CCGG	1 cut(s)	323
MspR9I	CCNGG	1 cut(s)	323
Mva1269I	GAATGC	1 cut(s)	361
MwoI	GCNNNNNNNGC	2 cut(s)	332, 356
NarI	GGCGCC	1 cut(s)	249
NciI	CCSGG	1 cut(s)	323
NdeI	CATATG	1 cut(s)	592
NdeII	GATC	4 cut(s)	51, 313, 739, 865
NlaIII	CATG	4 cut(s)	118, 239, 383, 866
NlaIV	GGNNCC	3 cut(s)	185, 250, 369
NmuCI	GTSAC	2 cut(s)	802, 856
NspV	TTCGAA	1 cut(s)	305
PctI	GAATGC	1 cut(s)	361
PfeI	GAWTC	2 cut(s)	299, 328
PkrI	GCNGC	3 cut(s)	102, 253, 337
Ple19I	CGATCG	1 cut(s)	316
PleI	GAGTC	1 cut(s)	709
PluTI	GGCGCC	1 cut(s)	252
PpsI	GAGTC	1 cut(s)	709
PsiI	TTATAA	1 cut(s)	579
PspN4I	GGNNCC	3 cut(s)	185, 250, 369
PspPI	GGNCC	2 cut(s)	21, 183
PvuI	CGATCG	1 cut(s)	316
RsaI	GTAC	1 cut(s)	83
RsaNI	GTAC	1 cut(s)	82
SalI	GTCGAC	1 cut(s)	14
SaqAI	TTAA	2 cut(s)	443, 510
SatI	GCNGC	3 cut(s)	101, 252, 336
Sau3AI	GATC	4 cut(s)	51, 313, 739, 865
Sau96I	GGNCC	2 cut(s)	21, 183
SchI	GAGTC	1 cut(s)	710
ScrFI	CCNGG	1 cut(s)	323
SfaNI	GCATC	1 cut(s)	84
SfoI	GGCGCC	1 cut(s)	250
SfuI	TTCGAA	1 cut(s)	305
SinI	GGWCC	2 cut(s)	21, 183
SmlI	CTYRAG	1 cut(s)	65
SmoI	CTYRAG	1 cut(s)	65
Sse9I	AATT	7 cut(s)	93, 159, 496, 793, 814, 846, 884
SsiI	CCGC	4 cut(s)	73, 98, 252, 335
SspDI	GGCGCC	1 cut(s)	248
SspMI	CTAG	1 cut(s)	347
StyD4I	CCNGG	1 cut(s)	321
TaaI	ACNGT	3 cut(s)	13, 212, 537
TaiI	ACGT	1 cut(s)	87
TaqI	TCGA	7 cut(s)	15, 36, 78, 305, 662, 726, 873
TasI	AATT	7 cut(s)	93, 159, 496, 793, 814, 846, 884
TauI	GCSGC	2 cut(s)	254, 338
TfiI	GAWTC	2 cut(s)	299, 328
Tru1I	TTAA	2 cut(s)	443, 510
Tru9I	TTAA	2 cut(s)	443, 510
TscAI	CASTG	3 cut(s)	16, 54, 250
TseFI	GTSAC	2 cut(s)	802, 856
TseI	GCWGC	1 cut(s)	100
Tsp45I	GTSAC	2 cut(s)	802, 856
TspDTI	ATGAA	3 cut(s)	103, 368, 787
TspRI	CASTG	3 cut(s)	16, 54, 250
VpaK11BI	GGWCC	2 cut(s)	21, 183
XapI	RAATTY	5 cut(s)	159, 496, 793, 814, 846
XcmI	CCANNNNNNNNNTGG	2 cut(s)	39, 242
XmiI	GTMKAC	2 cut(s)	15, 214
XspI	CTAG	1 cut(s)	347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.