B3 domain-containing
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| B3 | PF02362 | 34 - 118 | 5.9e-13 | B3 DNA binding domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 489, 586 |
| Acc36I | ACCTGC | 1 cut(s) | 306 |
| AccIII | TCCGGA | 1 cut(s) | 130 |
| AcoI | YGGCCR | 1 cut(s) | 257 |
| AcsI | RAATTY | 3 cut(s) | 23, 38, 169 |
| AfaI | GTAC | 2 cut(s) | 227, 610 |
| AgsI | TTSAA | 3 cut(s) | 398, 431, 525 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 142 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 28, 60 |
| Alw26I | GTCTC | 2 cut(s) | 105, 467 |
| Aor13HI | TCCGGA | 1 cut(s) | 130 |
| AoxI | GGCC | 1 cut(s) | 257 |
| ApoI | RAATTY | 3 cut(s) | 23, 38, 169 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 520 |
| AspS9I | GGNCC | 1 cut(s) | 588 |
| AsuC2I | CCSGG | 1 cut(s) | 20 |
| AsuHPI | GGTGA | 1 cut(s) | 245 |
| AvaII | GGWCC | 1 cut(s) | 588 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 217, 250 |
| BalI | TGGCCA | 1 cut(s) | 259 |
| BarI | GAAGNNNNNNTAC | 1 cut(s) | 592 |
| BciVI | GTATCC | 1 cut(s) | 384 |
| BcnI | CCSGG | 1 cut(s) | 20 |
| BcoDI | GTCTC | 2 cut(s) | 105, 467 |
| BfaI | CTAG | 3 cut(s) | 95, 108, 327 |
| BfuAI | ACCTGC | 1 cut(s) | 306 |
| BfuI | GTATCC | 1 cut(s) | 384 |
| BglII | AGATCT | 1 cut(s) | 160 |
| Bme1390I | CCNGG | 1 cut(s) | 20 |
| Bme18I | GGWCC | 1 cut(s) | 588 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 142 |
| BmgT120I | GGNCC | 1 cut(s) | 588 |
| BmiI | GGNNCC | 2 cut(s) | 46, 589 |
| BmrFI | CCNGG | 1 cut(s) | 20 |
| BmrI | ACTGGG | 1 cut(s) | 131 |
| BmuI | ACTGGG | 1 cut(s) | 131 |
| BpuEI | CTTGAG | 1 cut(s) | 103 |
| BpuMI | CCSGG | 1 cut(s) | 20 |
| BsaAI | YACGTR | 1 cut(s) | 612 |
| BsaWI | WCCGGW | 2 cut(s) | 33, 130 |
| Bse1I | ACTGG | 1 cut(s) | 126 |
| BseAI | TCCGGA | 1 cut(s) | 130 |
| BseMII | CTCAG | 1 cut(s) | 562 |
| BseNI | ACTGG | 1 cut(s) | 126 |
| BseYI | CCCAGC | 1 cut(s) | 48 |
| BshFI | GGCC | 1 cut(s) | 259 |
| BsiSI | CCGG | 3 cut(s) | 19, 34, 131 |
| BsmAI | GTCTC | 2 cut(s) | 105, 467 |
| BsmBI | CGTCTC | 1 cut(s) | 105 |
| BsnI | GGCC | 1 cut(s) | 259 |
| Bsp13I | TCCGGA | 1 cut(s) | 130 |
| Bsp143I | GATC | 2 cut(s) | 160, 366 |
| BspANI | GGCC | 1 cut(s) | 259 |
| BspCNI | CTCAG | 1 cut(s) | 561 |
| BspEI | TCCGGA | 1 cut(s) | 130 |
| BspLI | GGNNCC | 2 cut(s) | 46, 589 |
| BspMI | ACCTGC | 1 cut(s) | 306 |
| BsrI | ACTGG | 1 cut(s) | 126 |
| BssMI | GATC | 2 cut(s) | 160, 366 |
| Bst4CI | ACNGT | 2 cut(s) | 453, 520 |
| BstBAI | YACGTR | 1 cut(s) | 612 |
| BstDEI | CTNAG | 3 cut(s) | 14, 458, 548 |
| BstKTI | GATC | 2 cut(s) | 163, 369 |
| BstMAI | GTCTC | 2 cut(s) | 105, 467 |
| BstMBI | GATC | 2 cut(s) | 160, 366 |
| BstSCI | CCNGG | 1 cut(s) | 18 |
| BstSNI | TACGTA | 1 cut(s) | 612 |
| BstX2I | RGATCY | 1 cut(s) | 160 |
| BstYI | RGATCY | 1 cut(s) | 160 |
| BsuI | GTATCC | 1 cut(s) | 384 |
| BsuRI | GGCC | 1 cut(s) | 259 |
| BtsI | GCAGTG | 1 cut(s) | 531 |
| BtsIMutI | CAGTG | 2 cut(s) | 449, 531 |
| BveI | ACCTGC | 1 cut(s) | 306 |
| Cfr13I | GGNCC | 1 cut(s) | 588 |
| Csp6I | GTAC | 2 cut(s) | 226, 609 |
| CviAII | CATG | 4 cut(s) | 192, 413, 505, 584 |
| CviJI | RGCY | 5 cut(s) | 18, 52, 187, 259, 288 |
| CviKI_1 | RGCY | 5 cut(s) | 18, 52, 187, 259, 288 |
| CviQI | GTAC | 2 cut(s) | 226, 609 |
| DdeI | CTNAG | 3 cut(s) | 14, 458, 548 |
| DpnI | GATC | 2 cut(s) | 162, 368 |
| DpnII | GATC | 2 cut(s) | 160, 366 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 489, 586 |
| DriI | GACNNNNNGTC | 1 cut(s) | 142 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 489, 586 |
| EaeI | YGGCCR | 1 cut(s) | 257 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 142 |
| Eco105I | TACGTA | 1 cut(s) | 612 |
| Eco47I | GGWCC | 1 cut(s) | 588 |
| Esp3I | CGTCTC | 1 cut(s) | 105 |
| FaeI | CATG | 4 cut(s) | 195, 416, 508, 587 |
| FaiI | YATR | 8 cut(s) | 153, 193, 315, 344, 414, 506, 566, 585 |
| FatI | CATG | 4 cut(s) | 191, 412, 504, 583 |
| FspBI | CTAG | 3 cut(s) | 95, 108, 327 |
| GsaI | CCCAGC | 1 cut(s) | 52 |
| HaeIII | GGCC | 1 cut(s) | 259 |
| HapII | CCGG | 3 cut(s) | 19, 34, 131 |
| Hin1II | CATG | 4 cut(s) | 195, 416, 508, 587 |
| HinfI | GANTC | 2 cut(s) | 127, 419 |
| HpaII | CCGG | 3 cut(s) | 19, 34, 131 |
| HphI | GGTGA | 1 cut(s) | 245 |
| Hpy188I | TCNGA | 2 cut(s) | 202, 311 |
| Hpy188III | TCNNGA | 8 cut(s) | 82, 95, 108, 131, 268, 327, 480, 597 |
| HpyAV | CCTTC | 2 cut(s) | 244, 311 |
| HpyCH4III | ACNGT | 2 cut(s) | 453, 520 |
| HpyCH4IV | ACGT | 2 cut(s) | 114, 611 |
| HpyCH4V | TGCA | 1 cut(s) | 536 |
| HpyF3I | CTNAG | 3 cut(s) | 14, 458, 548 |
| HpySE526I | ACGT | 2 cut(s) | 114, 611 |
| Hsp92II | CATG | 4 cut(s) | 195, 416, 508, 587 |
| Kpn2I | TCCGGA | 1 cut(s) | 130 |
| Kzo9I | GATC | 2 cut(s) | 160, 366 |
| MaeI | CTAG | 3 cut(s) | 95, 108, 327 |
| MaeII | ACGT | 2 cut(s) | 114, 611 |
| MaeIII | GTNAC | 1 cut(s) | 175 |
| MalI | GATC | 2 cut(s) | 162, 368 |
| MboI | GATC | 2 cut(s) | 160, 366 |
| MboII | GAAGA | 3 cut(s) | 410, 414, 612 |
| MfeI | CAATTG | 1 cut(s) | 360 |
| MflI | RGATCY | 1 cut(s) | 160 |
| MlsI | TGGCCA | 1 cut(s) | 259 |
| MluCI | AATT | 4 cut(s) | 23, 38, 169, 360 |
| MluNI | TGGCCA | 1 cut(s) | 259 |
| MnlI | CCTC | 5 cut(s) | 127, 229, 433, 504, 510 |
| Mox20I | TGGCCA | 1 cut(s) | 259 |
| MroI | TCCGGA | 1 cut(s) | 130 |
| MroXI | GAANNNNTTC | 1 cut(s) | 520 |
| MscI | TGGCCA | 1 cut(s) | 259 |
| MseI | TTAA | 2 cut(s) | 117, 381 |
| Msp20I | TGGCCA | 1 cut(s) | 259 |
| MspI | CCGG | 3 cut(s) | 19, 34, 131 |
| MspR9I | CCNGG | 1 cut(s) | 20 |
| MunI | CAATTG | 1 cut(s) | 360 |
| NciI | CCSGG | 1 cut(s) | 20 |
| NdeII | GATC | 2 cut(s) | 160, 366 |
| NlaIII | CATG | 4 cut(s) | 195, 416, 508, 587 |
| NlaIV | GGNNCC | 2 cut(s) | 46, 589 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 375 |
| PdmI | GAANNNNTTC | 1 cut(s) | 520 |
| PfeI | GAWTC | 2 cut(s) | 127, 419 |
| Ppu21I | YACGTR | 1 cut(s) | 612 |
| PspFI | CCCAGC | 1 cut(s) | 48 |
| PspN4I | GGNNCC | 2 cut(s) | 46, 589 |
| PspPI | GGNCC | 1 cut(s) | 588 |
| PsuI | RGATCY | 1 cut(s) | 160 |
| RsaI | GTAC | 2 cut(s) | 227, 610 |
| RsaNI | GTAC | 2 cut(s) | 226, 609 |
| SaqAI | TTAA | 2 cut(s) | 117, 381 |
| Sau3AI | GATC | 2 cut(s) | 160, 366 |
| Sau96I | GGNCC | 1 cut(s) | 588 |
| ScrFI | CCNGG | 1 cut(s) | 20 |
| SetI | ASST | 6 cut(s) | 117, 227, 240, 300, 339, 614 |
| SinI | GGWCC | 1 cut(s) | 588 |
| SmlI | CTYRAG | 1 cut(s) | 82 |
| SmoI | CTYRAG | 1 cut(s) | 82 |
| SnaBI | TACGTA | 1 cut(s) | 612 |
| Sse9I | AATT | 4 cut(s) | 23, 38, 169, 360 |
| SspMI | CTAG | 3 cut(s) | 95, 108, 327 |
| StyD4I | CCNGG | 1 cut(s) | 18 |
| TaaI | ACNGT | 2 cut(s) | 453, 520 |
| TaiI | ACGT | 2 cut(s) | 117, 614 |
| TaqI | TCGA | 3 cut(s) | 269, 369, 481 |
| TasI | AATT | 4 cut(s) | 23, 38, 169, 360 |
| TfiI | GAWTC | 2 cut(s) | 127, 419 |
| Tru1I | TTAA | 2 cut(s) | 117, 381 |
| Tru9I | TTAA | 2 cut(s) | 117, 381 |
| TscAI | CASTG | 2 cut(s) | 456, 538 |
| TspDTI | ATGAA | 4 cut(s) | 330, 423, 521, 581 |
| TspRI | CASTG | 2 cut(s) | 456, 538 |
| VpaK11BI | GGWCC | 1 cut(s) | 588 |
| XapI | RAATTY | 3 cut(s) | 23, 38, 169 |
| XbaI | TCTAGA | 3 cut(s) | 94, 107, 326 |
| XmnI | GAANNNNTTC | 1 cut(s) | 520 |
| XspI | CTAG | 3 cut(s) | 95, 108, 327 |