Prupe.7G143800_v2.0.a1

B3 domain-containing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0000156
Physical Location & Seq
Forward (+)
15792262 .. 15794112
1851 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G143800.1

Sequence Viewer

Length: 1104 bp
ATGGAAGAAACATATGAAGATGATGGTTTTATTGAAACTGTGGACGATTATCCATCATGCCCAAAAACAAGGAAGAAATCTCCAATAGAACCACAGCCTCACAAGAAAAGCAGAACATGTTCAATTAGAAAAGCAGAAAGCAAAATCAAAGATGTTTGTGGGGCATCTAGGACTCGAAAGTTCCTAGTTCGAGGAACTGAGGTTCCTAGGAGGATTGATCCAGTTGAGGCAACTGGAAAAGATATAGCTCTTCAGAGAGCTAAGGCATTCAAGTCCGAATACCCTTTTTGTTGGGTTCTTATGCATCACTCGTATATCCATAGAAGTTATTTGCGTTTGCCAGCCAAATTTTCCAAGGAACACATTAACTGGACTCATGACAACATCGTACTTCATGTTCCAAATGGAAGAACTTGGCCTGTCAAATTAGGGCAAGATGCCAGAGGAAGAGTAATATACCTGAGTGGTTGGACAACATTTGTGCGAGACAACAATTTGGAAGTTGGTGATGTGTGTGTCTTTGAGTTGATTAACGACGTCAAACCTTTATTTGATGTTGTCTTGTTCTGCGCTACAAAAGCTGCAAATTGTACCTTGTCACCAGCTGATGACGATTCTGGCTATGATTCTGGTGATGATTCTGGTGATGAGTCTGATGATAATTCTATTGAAATCCTAGATGATTTTCCACCCGTCCCAAGAAAAACAAGAGAGAAACCTCCACATATATCTCTTGAAAGAGCTGTTGAGAGAGCAAACTCTTTCGCATCTAAATACCCCTTTTTCAAGATTGCTATGCATGCCACTTATATCCATGGGCATCATATGAACTTGTCATCCTCGTTTGTCAAAGAAAATCTTAACCAGACAAGTACTTATGCCATCCTTCGGGTTTCGGATGGAAGAACATGGTCTGTCAAATTAGACCAATATGGCGATGCAAGAACTAGATTCCAAGGTGGTTGGATGGACTTTGTGAGAGAGAATAGTTTGGTAATTGGTGATGTGTGTGTCTTTGTGTTGGTTAACAACATCAAACCTTTATTTGATGTTGCTTTTTACCGCACCAAATCAAAAGCTGCACATTGCACCTTGAATAATTGA

Protein Analysis

368

Amino Acids

41.83

Weight (kDa)

8.01

Isoelectric Point (pI)

46.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000156)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49475 AT3G18960 AT3G18960 AT3G18960 AT4G01580
fragaria_vesca FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14670 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14690 FvH4_1g14700 FvH4_1g29250 FvH4_6g29400 FvH4_6g38681 FvH4_6g38690 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_7g02010
malus_domestica MD00G1020600.v1.1 MD00G1022000.v1.1 MD00G1022100.v1.1 MD02G1159700.v1.1 MD02G1159800.v1.1 MD02G1159900.v1.1 MD02G1160000.v1.1 MD02G1160300.v1.1 MD15G1274100.v1.1 MD15G1274200.v1.1 MD15G1274400.v1.1 MD15G1302000.v1.1
prunus_persica Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.3G083400_v2.0.a1 Prupe.6G229600_v2.0.a1 Prupe.7G039600_v2.0.a1 Prupe.7G044500_v2.0.a1 Prupe.7G044800_v2.0.a1 Prupe.7G143100_v2.0.a1 Prupe.7G143500_v2.0.a1 Prupe.7G143600_v2.0.a1 Prupe.7G143700_v2.0.a1 Prupe.7G143800_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.8G072800_v2.0.a1 Prupe.8G072800_v2.0.a1
pyrus_communis pycom02g12620 pycom02g12630 pycom15g23750 pycom15g26490 pycom17g21160
rosa_chinensis RchiOBHm_Chr2g0103421 RchiOBHm_Chr2g0103431 RchiOBHm_Chr2g0103441 RchiOBHm_Chr2g0103491 RchiOBHm_Chr2g0103501 RchiOBHm_Chr2g0103521 RchiOBHm_Chr2g0103541 RchiOBHm_Chr2g0103551 RchiOBHm_Chr2g0103561 RchiOBHm_Chr2g0134821 RchiOBHm_Chr2g0152161 RchiOBHm_Chr2g0152181 RchiOBHm_Chr7g0227261 RchiOBHm_Chr7g0227351 RchiOBHm_Chr7g0227431
rosa_laevigata RLG00000001649 RLG00000001653 RLG00000001659 RLG00000017235 RLG00000017236 RLG00000017240 RLG00000017241 RLG00000017242 RLG00000017243 RLG00000017244 RLG00000017349 RLG00000019424 RLG00000020614 RLG00000020615
rosa_multiflora Rmu_co8247875.1_g000001 Rmu_co8429551.1_g000001 Rmu_sc0000173.1_g000009 Rmu_sc0000718.1_g000004 Rmu_sc0001530.1_g000001 Rmu_sc0001530.1_g000002 Rmu_sc0001530.1_g000004 Rmu_sc0001530.1_g000005 Rmu_sc0001852.1_g000023 Rmu_sc0001852.1_g000024 Rmu_sc0002434.1_g000001 Rmu_sc0002434.1_g000002 Rmu_sc0003043.1_g000016 Rmu_sc0003153.1_g000005 Rmu_sc0011039.1_g000001 Rmu_sc0031822.1_g000001
rosa_roxburghii Rroxscaffold_2G00095860 Rroxscaffold_2G00095870 Rroxscaffold_2G00109720 Rroxscaffold_2G00139530 Rroxscaffold_2G00139550 Rroxscaffold_2G00139570 Rroxscaffold_2G00139580 Rroxscaffold_2G00139630 Rroxscaffold_2G00139640 Rroxscaffold_4G00328430 Rroxscaffold_4G00328440 Rroxscaffold_4G00328450
rosa_rugosa Rorug02G0114900 Rorug02G0115000 Rorug02G0115000 Rorug02G0115200 Rorug02G0115300 Rorug02G0115400 Rorug02G0115500 Rorug02G0115600 Rorug02G0115600 Rorug02G0115600 Rorug02G0115700 Rorug02G0320300 Rorug02G0431300 Rorug02G0431300 Rorug06G0028200 Rorug07G0241300
rosa_samantha Rh2AG163200 Rh2AG163300 Rh2AG163700 Rh2AG163800 Rh2AG163900 Rh2AG164000 Rh2AG373400 Rh2AG492600 Rh2BG170300 Rh2BG170400 Rh2BG170800 Rh2BG170900 Rh2BG171000 Rh2BG171100 Rh2BG171200 Rh2BG377800 Rh2BG505000 Rh2BG505100 Rh2BG505200 Rh2CG170300 Rh2CG170700 Rh2CG479000 Rh2DG169100 Rh2DG169200 Rh2DG169300 Rh2DG516400 Rh7AG391200 Rh7BG376200 Rh7CG410200 Rh7CG411500 Rh7CG412000 Rh7CG412700 Rh7DG388800
rosa_wichuraiana Rw2G012830 Rw2G012840 Rw2G012870 Rw2G012880 Rw2G012890 Rw2G012900 Rw2G030310 Rw2G040470 Rw2G040480 Rw7G032720 Rw7G032730 Rw7G032750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 540
AciI CCGC 1 cut(s) 1063
AclWI GGATC 1 cut(s) 212
AcsI RAATTY 1 cut(s) 347
AcuI CTGAAG 1 cut(s) 236
AcyI GRCGYC 1 cut(s) 537
AfaI GTAC 3 cut(s) 390, 592, 874
AfiI CCNNNNNNNGG 1 cut(s) 888
AflIII ACRYGT 1 cut(s) 116
AgsI TTSAA 7 cut(s) 35, 123, 271, 671, 737, 787, 1096
AloI GAACNNNNNNTCC 6 cut(s) 186, 187, 218, 219, 821, 853
AluBI AGCT 6 cut(s) 248, 260, 581, 605, 743, 1079
AluI AGCT 6 cut(s) 248, 260, 581, 605, 743, 1079
Alw26I GTCTC 1 cut(s) 480
AlwI GGATC 1 cut(s) 212
AoxI GGCC 1 cut(s) 416
ApeKI GCWGC 2 cut(s) 581, 1079
ApoI RAATTY 1 cut(s) 347
Asp700I GAANNNNTTC 1 cut(s) 118
AspA2I CCTAGG 1 cut(s) 206
AspLEI GCGC 1 cut(s) 572
AsuHPI GGTGA 5 cut(s) 518, 591, 644, 656, 1013
AvrII CCTAGG 1 cut(s) 206
BbvI GCAGC 2 cut(s) 568, 1066
BccI CCATC 5 cut(s) 17, 61, 890, 893, 961
BcoDI GTCTC 1 cut(s) 480
BfaI CTAG 5 cut(s) 168, 185, 207, 677, 948
BisI GCNGC 2 cut(s) 582, 1080
BlnI CCTAGG 1 cut(s) 206
BlsI GCNGC 2 cut(s) 583, 1081
BmcAI AGTACT 1 cut(s) 874
BmiI GGNNCC 1 cut(s) 204
BmsI GCATC 6 cut(s) 173, 313, 427, 776, 829, 928
Bpu10I CCTNAGC 1 cut(s) 261
BsaHI GRCGYC 1 cut(s) 537
BsaJI CCNNGG 4 cut(s) 206, 354, 814, 955
Bsc4I CCNNNNNNNGG 1 cut(s) 888
Bse1I ACTGG 3 cut(s) 221, 238, 374
Bse3DI GCAATG 1 cut(s) 1084
BseDI CCNNGG 4 cut(s) 206, 354, 814, 955
BseGI GGATG 4 cut(s) 836, 882, 904, 972
BseLI CCNNNNNNNGG 1 cut(s) 888
BseMI GCAATG 1 cut(s) 1084
BseMII CTCAG 2 cut(s) 189, 452
BseNI ACTGG 3 cut(s) 221, 238, 374
BseXI GCAGC 2 cut(s) 568, 1066
BsgI GTGCAG 1 cut(s) 1065
BshFI GGCC 1 cut(s) 418
BslFI GGGAC 1 cut(s) 680
BslI CCNNNNNNNGG 1 cut(s) 888
BsmAI GTCTC 1 cut(s) 480
BsmFI GGGAC 1 cut(s) 680
BsmI GAATGC 1 cut(s) 266
BsnI GGCC 1 cut(s) 418
Bsp143I GATC 1 cut(s) 217
Bsp19I CCATGG 1 cut(s) 814
BspACI CCGC 1 cut(s) 1063
BspANI GGCC 1 cut(s) 418
BspCNI CTCAG 2 cut(s) 190, 453
BspHI TCATGA 1 cut(s) 376
BspLI GGNNCC 1 cut(s) 204
BspPI GGATC 1 cut(s) 212
BspQI GCTCTTC 1 cut(s) 255
BsrDI GCAATG 1 cut(s) 1084
BsrI ACTGG 3 cut(s) 221, 238, 374
BssECI CCNNGG 4 cut(s) 206, 354, 814, 955
BssMI GATC 1 cut(s) 217
BssNI GRCGYC 1 cut(s) 537
BssT1I CCWWGG 4 cut(s) 206, 354, 814, 955
Bst4CI ACNGT 1 cut(s) 40
Bst6I CTCTTC 2 cut(s) 255, 442
BstACI GRCGYC 1 cut(s) 537
BstC8I GCNNGC 2 cut(s) 342, 801
BstDEI CTNAG 3 cut(s) 198, 261, 461
BstDSI CCRYGG 1 cut(s) 814
BstF5I GGATG 4 cut(s) 836, 882, 904, 972
BstHHI GCGC 1 cut(s) 572
BstKTI GATC 1 cut(s) 220
BstMAI GTCTC 1 cut(s) 480
BstMBI GATC 1 cut(s) 217
BstMWI GCNNNNNNNGC 2 cut(s) 578, 800
BstNSI RCATGY 2 cut(s) 120, 803
BstV1I GCAGC 2 cut(s) 568, 1066
BsuRI GGCC 1 cut(s) 418
BtgI CCRYGG 1 cut(s) 814
BtgZI GCGATG 1 cut(s) 951
BtsCI GGATG 4 cut(s) 836, 882, 904, 972
Cac8I GCNNGC 2 cut(s) 342, 801
CciI TCATGA 1 cut(s) 376
CfoI GCGC 1 cut(s) 572
Csp6I GTAC 3 cut(s) 389, 591, 873
CviAII CATG 7 cut(s) 57, 117, 377, 395, 800, 815, 909
CviQI GTAC 3 cut(s) 389, 591, 873
DdeI CTNAG 3 cut(s) 198, 261, 461
DpnI GATC 1 cut(s) 219
DpnII GATC 1 cut(s) 217
Eam1104I CTCTTC 2 cut(s) 255, 442
EarI CTCTTC 2 cut(s) 255, 442
Eco130I CCWWGG 4 cut(s) 206, 354, 814, 955
Eco57I CTGAAG 1 cut(s) 236
EcoT14I CCWWGG 4 cut(s) 206, 354, 814, 955
EcoT22I ATGCAT 2 cut(s) 306, 801
ErhI CCWWGG 4 cut(s) 206, 354, 814, 955
FaeI CATG 7 cut(s) 60, 120, 380, 398, 803, 818, 912
FalI AAGNNNNNCTT 2 cut(s) 843, 875
FaqI GGGAC 1 cut(s) 680
FatI CATG 7 cut(s) 56, 116, 376, 394, 799, 814, 908
FauNDI CATATG 2 cut(s) 13, 825
Fnu4HI GCNGC 2 cut(s) 582, 1080
FokI GGATG 4 cut(s) 823, 869, 911, 979
Fsp4HI GCNGC 2 cut(s) 582, 1080
FspBI CTAG 5 cut(s) 168, 185, 207, 677, 948
GlaI GCGC 1 cut(s) 571
GluI GCNGC 2 cut(s) 582, 1080
HaeIII GGCC 1 cut(s) 418
HhaI GCGC 1 cut(s) 572
Hin1I GRCGYC 1 cut(s) 537
Hin1II CATG 7 cut(s) 60, 120, 380, 398, 803, 818, 912
Hin6I GCGC 1 cut(s) 570
HinP1I GCGC 1 cut(s) 570
HincII GTYRAC 1 cut(s) 1027
HindII GTYRAC 1 cut(s) 1027
HinfI GANTC 7 cut(s) 172, 373, 614, 626, 638, 650, 951
HpaI GTTAAC 1 cut(s) 1027
HphI GGTGA 5 cut(s) 518, 591, 644, 656, 1013
Hpy166II GTNNAC 2 cut(s) 43, 1027
Hpy188I TCNGA 4 cut(s) 255, 277, 655, 898
Hpy188III TCNNGA 3 cut(s) 377, 734, 787
Hpy8I GTNNAC 2 cut(s) 43, 1027
Hpy99I CGWCG 1 cut(s) 539
HpyAV CCTTC 1 cut(s) 896
HpyCH4III ACNGT 1 cut(s) 40
HpyCH4IV ACGT 1 cut(s) 537
HpyCH4V TGCA 6 cut(s) 304, 584, 799, 941, 1082, 1089
HpyF10VI GCNNNNNNNGC 2 cut(s) 578, 800
HpyF3I CTNAG 3 cut(s) 198, 261, 461
HpySE526I ACGT 1 cut(s) 537
Hsp92I GRCGYC 1 cut(s) 537
Hsp92II CATG 7 cut(s) 60, 120, 380, 398, 803, 818, 912
HspAI GCGC 1 cut(s) 570
KspAI GTTAAC 1 cut(s) 1027
Kzo9I GATC 1 cut(s) 217
LguI GCTCTTC 1 cut(s) 255
Lsp1109I GCAGC 2 cut(s) 568, 1066
LweI GCATC 6 cut(s) 173, 313, 427, 776, 829, 928
MaeI CTAG 5 cut(s) 168, 185, 207, 677, 948
MaeII ACGT 1 cut(s) 537
MaeIII GTNAC 1 cut(s) 597
MalI GATC 1 cut(s) 219
MboI GATC 1 cut(s) 217
MboII GAAGA 7 cut(s) 17, 29, 85, 242, 420, 459, 915
MluCI AATT 9 cut(s) 123, 347, 425, 493, 586, 661, 920, 996, 1099
MlyI GAGTC 3 cut(s) 166, 367, 659
MmeI TCCRAC 2 cut(s) 449, 944
MnlI CCTC 8 cut(s) 108, 185, 193, 204, 220, 437, 729, 850
Mph1103I ATGCAT 2 cut(s) 306, 801
MroXI GAANNNNTTC 1 cut(s) 118
MseI TTAA 4 cut(s) 366, 531, 861, 1026
MspA1I CMGCKG 1 cut(s) 605
Mva1269I GAATGC 1 cut(s) 266
MwoI GCNNNNNNNGC 2 cut(s) 578, 800
NcoI CCATGG 1 cut(s) 814
NdeI CATATG 2 cut(s) 13, 825
NdeII GATC 1 cut(s) 217
NlaIII CATG 7 cut(s) 60, 120, 380, 398, 803, 818, 912
NlaIV GGNNCC 1 cut(s) 204
NmuCI GTSAC 1 cut(s) 597
NsiI ATGCAT 2 cut(s) 306, 801
NspI RCATGY 2 cut(s) 120, 803
PaeI GCATGC 1 cut(s) 803
PagI TCATGA 1 cut(s) 376
PciI ACATGT 1 cut(s) 116
PciSI GCTCTTC 1 cut(s) 255
PctI GAATGC 1 cut(s) 266
PdmI GAANNNNTTC 1 cut(s) 118
PfeI GAWTC 4 cut(s) 614, 626, 638, 951
PkrI GCNGC 2 cut(s) 583, 1081
PleI GAGTC 3 cut(s) 166, 367, 658
PpsI GAGTC 3 cut(s) 166, 367, 658
PscI ACATGT 1 cut(s) 116
PspN4I GGNNCC 1 cut(s) 204
PsrI GAACNNNNNNTAC 2 cut(s) 381, 413
PvuII CAGCTG 1 cut(s) 605
RsaI GTAC 3 cut(s) 390, 592, 874
RsaNI GTAC 3 cut(s) 389, 591, 873
SapI GCTCTTC 1 cut(s) 255
SaqAI TTAA 4 cut(s) 366, 531, 861, 1026
SatI GCNGC 2 cut(s) 582, 1080
Sau3AI GATC 1 cut(s) 217
ScaI AGTACT 1 cut(s) 874
SchI GAGTC 3 cut(s) 166, 367, 659
SfaNI GCATC 6 cut(s) 173, 313, 427, 776, 829, 928
SphI GCATGC 1 cut(s) 803
Sse9I AATT 9 cut(s) 123, 347, 425, 493, 586, 661, 920, 996, 1099
SsiI CCGC 1 cut(s) 1063
SspMI CTAG 5 cut(s) 168, 185, 207, 677, 948
StyI CCWWGG 4 cut(s) 206, 354, 814, 955
TaaI ACNGT 1 cut(s) 40
TaiI ACGT 1 cut(s) 540
TaqI TCGA 2 cut(s) 175, 190
TasI AATT 9 cut(s) 123, 347, 425, 493, 586, 661, 920, 996, 1099
TatI WGTACW 1 cut(s) 872
TfiI GAWTC 4 cut(s) 614, 626, 638, 951
Tru1I TTAA 4 cut(s) 366, 531, 861, 1026
Tru9I TTAA 4 cut(s) 366, 531, 861, 1026
TseFI GTSAC 1 cut(s) 597
TseI GCWGC 2 cut(s) 581, 1079
Tsp45I GTSAC 1 cut(s) 597
TspDTI ATGAA 3 cut(s) 30, 383, 842
XapI RAATTY 1 cut(s) 347
XceI RCATGY 2 cut(s) 120, 803
XmaJI CCTAGG 1 cut(s) 206
XmnI GAANNNNTTC 1 cut(s) 118
XspI CTAG 5 cut(s) 168, 185, 207, 677, 948
ZraI GACGTC 1 cut(s) 538
ZrmI AGTACT 1 cut(s) 874
Zsp2I ATGCAT 2 cut(s) 306, 801
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.