Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0000156

Physical Location & Seq

Genomic Coordinates Forward (+)

21382236 .. 21382680

Gene Structure 445 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g26490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGGTTAGTTCCTTTACATCTGAATACCCTTTTCTCAAGGTTGCCATGCAGCCCACATATCTCCAATATTGCTATTTGAGCTTGCGATCCAAGTTTGTCAAGAAACATCTTAGCAAGACTTGTGATCATGTCTTCCTTAGGCGTTCAGATGGGAGAACTTGGCGTGTCAAACTAGAACAATATGAGACTGGAAGATGCAGATTGCTGAGTGGTTGGAAGAAATTTGTGCAAGAGAATAGTTTGGCGATCGGTGATGTGTGTGTCTTTGTGTTGATTGACAACATCAAACCTTTATTCAATGTTATCTTCTTCCCCACCGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

108

Amino Acids

12.58

Weight (kDa)

9.57

Isoelectric Point (pI)

40.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	11 - 97	9e-18	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000156)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49475 AT3G18960 AT3G18960 AT3G18960 AT4G01580
fragaria_vesca	FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14670 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14690 FvH4_1g14700 FvH4_1g29250 FvH4_6g29400 FvH4_6g38681 FvH4_6g38690 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_7g02010
malus_domestica	MD00G1020600.v1.1 MD00G1022000.v1.1 MD00G1022100.v1.1 MD02G1159700.v1.1 MD02G1159800.v1.1 MD02G1159900.v1.1 MD02G1160000.v1.1 MD02G1160300.v1.1 MD15G1274100.v1.1 MD15G1274200.v1.1 MD15G1274400.v1.1 MD15G1302000.v1.1
prunus_persica	Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.3G083400_v2.0.a1 Prupe.6G229600_v2.0.a1 Prupe.7G039600_v2.0.a1 Prupe.7G044500_v2.0.a1 Prupe.7G044800_v2.0.a1 Prupe.7G143100_v2.0.a1 Prupe.7G143500_v2.0.a1 Prupe.7G143600_v2.0.a1 Prupe.7G143700_v2.0.a1 Prupe.7G143800_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.8G072800_v2.0.a1 Prupe.8G072800_v2.0.a1
pyrus_communis	pycom02g12620 pycom02g12630 pycom15g23750 pycom15g26490 pycom17g21160
rosa_chinensis	RchiOBHm_Chr2g0103421 RchiOBHm_Chr2g0103431 RchiOBHm_Chr2g0103441 RchiOBHm_Chr2g0103491 RchiOBHm_Chr2g0103501 RchiOBHm_Chr2g0103521 RchiOBHm_Chr2g0103541 RchiOBHm_Chr2g0103551 RchiOBHm_Chr2g0103561 RchiOBHm_Chr2g0134821 RchiOBHm_Chr2g0152161 RchiOBHm_Chr2g0152181 RchiOBHm_Chr7g0227261 RchiOBHm_Chr7g0227351 RchiOBHm_Chr7g0227431
rosa_laevigata	RLG00000001649 RLG00000001653 RLG00000001659 RLG00000017235 RLG00000017236 RLG00000017240 RLG00000017241 RLG00000017242 RLG00000017243 RLG00000017244 RLG00000017349 RLG00000019424 RLG00000020614 RLG00000020615
rosa_multiflora	Rmu_co8247875.1_g000001 Rmu_co8429551.1_g000001 Rmu_sc0000173.1_g000009 Rmu_sc0000718.1_g000004 Rmu_sc0001530.1_g000001 Rmu_sc0001530.1_g000002 Rmu_sc0001530.1_g000004 Rmu_sc0001530.1_g000005 Rmu_sc0001852.1_g000023 Rmu_sc0001852.1_g000024 Rmu_sc0002434.1_g000001 Rmu_sc0002434.1_g000002 Rmu_sc0003043.1_g000016 Rmu_sc0003153.1_g000005 Rmu_sc0011039.1_g000001 Rmu_sc0031822.1_g000001
rosa_roxburghii	Rroxscaffold_2G00095860 Rroxscaffold_2G00095870 Rroxscaffold_2G00109720 Rroxscaffold_2G00139530 Rroxscaffold_2G00139550 Rroxscaffold_2G00139570 Rroxscaffold_2G00139580 Rroxscaffold_2G00139630 Rroxscaffold_2G00139640 Rroxscaffold_4G00328430 Rroxscaffold_4G00328440 Rroxscaffold_4G00328450
rosa_rugosa	Rorug02G0114900 Rorug02G0115000 Rorug02G0115000 Rorug02G0115200 Rorug02G0115300 Rorug02G0115400 Rorug02G0115500 Rorug02G0115600 Rorug02G0115600 Rorug02G0115600 Rorug02G0115700 Rorug02G0320300 Rorug02G0431300 Rorug02G0431300 Rorug06G0028200 Rorug07G0241300
rosa_samantha	Rh2AG163200 Rh2AG163300 Rh2AG163700 Rh2AG163800 Rh2AG163900 Rh2AG164000 Rh2AG373400 Rh2AG492600 Rh2BG170300 Rh2BG170400 Rh2BG170800 Rh2BG170900 Rh2BG171000 Rh2BG171100 Rh2BG171200 Rh2BG377800 Rh2BG505000 Rh2BG505100 Rh2BG505200 Rh2CG170300 Rh2CG170700 Rh2CG479000 Rh2DG169100 Rh2DG169200 Rh2DG169300 Rh2DG516400 Rh7AG391200 Rh7BG376200 Rh7CG410200 Rh7CG411500 Rh7CG412000 Rh7CG412700 Rh7DG388800
rosa_wichuraiana	Rw2G012830 Rw2G012840 Rw2G012870 Rw2G012880 Rw2G012890 Rw2G012900 Rw2G030310 Rw2G040470 Rw2G040480 Rw7G032720 Rw7G032730 Rw7G032750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	320
AciI	CCGC	1 cut(s)	318
AclWI	GGATC	1 cut(s)	81
AcsI	RAATTY	1 cut(s)	221
AgsI	TTSAA	1 cut(s)	298
AluBI	AGCT	1 cut(s)	81
AluI	AGCT	1 cut(s)	81
Alw26I	GTCTC	1 cut(s)	179
AlwI	GGATC	1 cut(s)	81
ApeKI	GCWGC	1 cut(s)	49
ApoI	RAATTY	1 cut(s)	221
AsuHPI	GGTGA	1 cut(s)	263
AxyI	CCTNAGG	1 cut(s)	137
BbsI	GAAGAC	1 cut(s)	124
BbvI	GCAGC	1 cut(s)	61
BccI	CCATC	1 cut(s)	143
BclI	TGATCA	1 cut(s)	124
BcoDI	GTCTC	1 cut(s)	179
BfaI	CTAG	1 cut(s)	173
BisI	GCNGC	1 cut(s)	50
BlsI	GCNGC	1 cut(s)	51
BmsI	GCATC	1 cut(s)	185
BpiI	GAAGAC	1 cut(s)	124
BpuEI	CTTGAG	1 cut(s)	20
Bse1I	ACTGG	1 cut(s)	193
Bse21I	CCTNAGG	1 cut(s)	137
BseMII	CTCAG	1 cut(s)	197
BseNI	ACTGG	1 cut(s)	193
BseXI	GCAGC	1 cut(s)	61
Bsh1236I	CGCG	1 cut(s)	320
Bsh1285I	CGRYCG	1 cut(s)	249
BsiEI	CGRYCG	1 cut(s)	249
BsmAI	GTCTC	1 cut(s)	179
Bsp143I	GATC	3 cut(s)	86, 124, 246
BspACI	CCGC	1 cut(s)	318
BspCNI	CTCAG	1 cut(s)	198
BspFNI	CGCG	1 cut(s)	320
BspPI	GGATC	1 cut(s)	81
BsrI	ACTGG	1 cut(s)	193
BssMI	GATC	3 cut(s)	86, 124, 246
BstC8I	GCNNGC	1 cut(s)	83
BstDEI	CTNAG	3 cut(s)	110, 137, 206
BstFNI	CGCG	1 cut(s)	320
BstKTI	GATC	3 cut(s)	89, 127, 249
BstMAI	GTCTC	1 cut(s)	179
BstMBI	GATC	3 cut(s)	86, 124, 246
BstMCI	CGRYCG	1 cut(s)	249
BstMWI	GCNNNNNNNGC	1 cut(s)	78
BstUI	CGCG	1 cut(s)	320
BstV1I	GCAGC	1 cut(s)	61
BstV2I	GAAGAC	1 cut(s)	124
Bsu36I	CCTNAGG	1 cut(s)	137
Cac8I	GCNNGC	1 cut(s)	83
CviAII	CATG	2 cut(s)	46, 128
CviJI	RGCY	2 cut(s)	52, 81
CviKI_1	RGCY	2 cut(s)	52, 81
DdeI	CTNAG	3 cut(s)	110, 137, 206
DpnI	GATC	3 cut(s)	88, 126, 248
DpnII	GATC	3 cut(s)	86, 124, 246
Eco81I	CCTNAGG	1 cut(s)	137
FaeI	CATG	2 cut(s)	49, 131
FaiI	YATR	4 cut(s)	47, 58, 129, 183
FatI	CATG	2 cut(s)	45, 127
FbaI	TGATCA	1 cut(s)	124
Fnu4HI	GCNGC	1 cut(s)	50
Fsp4HI	GCNGC	1 cut(s)	50
FspBI	CTAG	1 cut(s)	173
GluI	GCNGC	1 cut(s)	50
Hin1II	CATG	2 cut(s)	49, 131
HphI	GGTGA	1 cut(s)	263
Hpy188I	TCNGA	2 cut(s)	22, 148
Hpy188III	TCNNGA	1 cut(s)	100
HpyCH4V	TGCA	3 cut(s)	49, 198, 229
HpyF10VI	GCNNNNNNNGC	1 cut(s)	78
HpyF3I	CTNAG	3 cut(s)	110, 137, 206
Hsp92II	CATG	2 cut(s)	49, 131
Ksp22I	TGATCA	1 cut(s)	124
Kzo9I	GATC	3 cut(s)	86, 124, 246
LpnPI	CCDG	1 cut(s)	174
Lsp1109I	GCAGC	1 cut(s)	61
LweI	GCATC	1 cut(s)	185
MaeI	CTAG	1 cut(s)	173
MalI	GATC	3 cut(s)	88, 126, 248
MboI	GATC	3 cut(s)	86, 124, 246
MboII	GAAGA	5 cut(s)	124, 204, 229, 298, 301
MluCI	AATT	1 cut(s)	221
MmeI	TCCRAC	1 cut(s)	194
MvnI	CGCG	1 cut(s)	320
MwoI	GCNNNNNNNGC	1 cut(s)	78
NdeII	GATC	3 cut(s)	86, 124, 246
NlaIII	CATG	2 cut(s)	49, 131
PkrI	GCNGC	1 cut(s)	51
Ple19I	CGATCG	1 cut(s)	249
PvuI	CGATCG	1 cut(s)	249
SatI	GCNGC	1 cut(s)	50
Sau3AI	GATC	3 cut(s)	86, 124, 246
SetI	ASST	3 cut(s)	42, 83, 292
SfaNI	GCATC	1 cut(s)	185
SmlI	CTYRAG	1 cut(s)	35
SmoI	CTYRAG	1 cut(s)	35
Sse9I	AATT	1 cut(s)	221
SsiI	CCGC	1 cut(s)	318
SspI	AATATT	1 cut(s)	68
SspMI	CTAG	1 cut(s)	173
TasI	AATT	1 cut(s)	221
TseI	GCWGC	1 cut(s)	49
XapI	RAATTY	1 cut(s)	221
XspI	CTAG	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.