FvH4_1g14650

B3 domain-containing transcription factor VRN1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000156
Physical Location & Seq
Reverse (-)
8204664 .. 8209039
4376 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g14650.t4

Sequence Viewer

Length: 924 bp
ATGTATCGTCGCCGGGAACGTCACGGCCGGCCACCATTTTGTGCTCCAACTACAGCTCCTCATTTTTTCAAGTTCATTCTAGACGACACTTCCAGAGACACCAAGCTAAAACTTCCATATAAATTTGTGAAGAAATATGGAGGAGAGCTATCAAGTTCAGCATCTCTAAAGCTTCCGGATGGTTTAGAATGGGAAGTGGATATCACCAGGTGTGATTCTAAGGTTTGGTTCGAGAAGGGTTGGGAAAATTTCTCTTATTTTTACTCCATTGGCCACGGCCACTTTCTGGTTTTTGGATACCAAGGGAATTCTAAATTCGATGTTTGCATATTTGATAGAACAGCCACAGAGATTGACTATTCCCGAACTGTGGAAGATGATGATTCATCTGGTGAAATTTTGGAGGACTGTCTAAGGGGTTCAAGGAATTCAGGTTCTGTTTCTCGCAAGAAAAACAGGAACAATTCAACTGGTAAACCAGAAATGGATGATAACAATGATGAAGGTGATGTGGGTAGTGAGGAGGGTGAGGATGAAGATAATCATTCTAGGAGAATGCATCCGGTCACATCAAGTATTCGAAAGGAAATAGCTCTTCAGAGAGCTAAAGATTATGAACCCGCACTCCCTCATTTTGTGATTGCAATCCGTACCTCAAGTATCCCTGGAGGTTATTTGTATGTGCCATCTGTGTTTAGCAAGACATATCTTGCTACGCAGCCTACTCACATCATGCTTCAAACGGTTTCAAATAAGGAACCCTGGTGTGTAGATATGCATTATGAAAGATCAGCATGCAGATTACGGGCTGGTTGGCCTGGATTTGTGAAAAGCAATAAATTAGTGCTGGGTGATGCTTGTGTCTTTGTGTTAAAAGACAGCAATGCATTTCTATTTGATGTTGTGTTTTACCGGGCCACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

308

Amino Acids

35.1

Weight (kDa)

6.52

Isoelectric Point (pI)

51.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 25 - 113 3.2e-13 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000156)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49475 AT3G18960 AT3G18960 AT3G18960 AT4G01580
fragaria_vesca FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14670 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14690 FvH4_1g14700 FvH4_1g29250 FvH4_6g29400 FvH4_6g38681 FvH4_6g38690 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_7g02010
malus_domestica MD00G1020600.v1.1 MD00G1022000.v1.1 MD00G1022100.v1.1 MD02G1159700.v1.1 MD02G1159800.v1.1 MD02G1159900.v1.1 MD02G1160000.v1.1 MD02G1160300.v1.1 MD15G1274100.v1.1 MD15G1274200.v1.1 MD15G1274400.v1.1 MD15G1302000.v1.1
prunus_persica Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.3G083400_v2.0.a1 Prupe.6G229600_v2.0.a1 Prupe.7G039600_v2.0.a1 Prupe.7G044500_v2.0.a1 Prupe.7G044800_v2.0.a1 Prupe.7G143100_v2.0.a1 Prupe.7G143500_v2.0.a1 Prupe.7G143600_v2.0.a1 Prupe.7G143700_v2.0.a1 Prupe.7G143800_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.8G072800_v2.0.a1 Prupe.8G072800_v2.0.a1
pyrus_communis pycom02g12620 pycom02g12630 pycom15g23750 pycom15g26490 pycom17g21160
rosa_chinensis RchiOBHm_Chr2g0103421 RchiOBHm_Chr2g0103431 RchiOBHm_Chr2g0103441 RchiOBHm_Chr2g0103491 RchiOBHm_Chr2g0103501 RchiOBHm_Chr2g0103521 RchiOBHm_Chr2g0103541 RchiOBHm_Chr2g0103551 RchiOBHm_Chr2g0103561 RchiOBHm_Chr2g0134821 RchiOBHm_Chr2g0152161 RchiOBHm_Chr2g0152181 RchiOBHm_Chr7g0227261 RchiOBHm_Chr7g0227351 RchiOBHm_Chr7g0227431
rosa_laevigata RLG00000001649 RLG00000001653 RLG00000001659 RLG00000017235 RLG00000017236 RLG00000017240 RLG00000017241 RLG00000017242 RLG00000017243 RLG00000017244 RLG00000017349 RLG00000019424 RLG00000020614 RLG00000020615
rosa_multiflora Rmu_co8247875.1_g000001 Rmu_co8429551.1_g000001 Rmu_sc0000173.1_g000009 Rmu_sc0000718.1_g000004 Rmu_sc0001530.1_g000001 Rmu_sc0001530.1_g000002 Rmu_sc0001530.1_g000004 Rmu_sc0001530.1_g000005 Rmu_sc0001852.1_g000023 Rmu_sc0001852.1_g000024 Rmu_sc0002434.1_g000001 Rmu_sc0002434.1_g000002 Rmu_sc0003043.1_g000016 Rmu_sc0003153.1_g000005 Rmu_sc0011039.1_g000001 Rmu_sc0031822.1_g000001
rosa_roxburghii Rroxscaffold_2G00095860 Rroxscaffold_2G00095870 Rroxscaffold_2G00109720 Rroxscaffold_2G00139530 Rroxscaffold_2G00139550 Rroxscaffold_2G00139570 Rroxscaffold_2G00139580 Rroxscaffold_2G00139630 Rroxscaffold_2G00139640 Rroxscaffold_4G00328430 Rroxscaffold_4G00328440 Rroxscaffold_4G00328450
rosa_rugosa Rorug02G0114900 Rorug02G0115000 Rorug02G0115000 Rorug02G0115200 Rorug02G0115300 Rorug02G0115400 Rorug02G0115500 Rorug02G0115600 Rorug02G0115600 Rorug02G0115600 Rorug02G0115700 Rorug02G0320300 Rorug02G0431300 Rorug02G0431300 Rorug06G0028200 Rorug07G0241300
rosa_samantha Rh2AG163200 Rh2AG163300 Rh2AG163700 Rh2AG163800 Rh2AG163900 Rh2AG164000 Rh2AG373400 Rh2AG492600 Rh2BG170300 Rh2BG170400 Rh2BG170800 Rh2BG170900 Rh2BG171000 Rh2BG171100 Rh2BG171200 Rh2BG377800 Rh2BG505000 Rh2BG505100 Rh2BG505200 Rh2CG170300 Rh2CG170700 Rh2CG479000 Rh2DG169100 Rh2DG169200 Rh2DG169300 Rh2DG516400 Rh7AG391200 Rh7BG376200 Rh7CG410200 Rh7CG411500 Rh7CG412000 Rh7CG412700 Rh7DG388800
rosa_wichuraiana Rw2G012830 Rw2G012840 Rw2G012870 Rw2G012880 Rw2G012890 Rw2G012900 Rw2G030310 Rw2G040470 Rw2G040480 Rw7G032720 Rw7G032730 Rw7G032750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 286
AccIII TCCGGA 1 cut(s) 175
AciI CCGC 1 cut(s) 621
AcoI YGGCCR 4 cut(s) 25, 29, 271, 277
AcsI RAATTY 6 cut(s) 122, 247, 307, 314, 396, 427
AcuI CTGAAG 1 cut(s) 581
AdeI CACNNNGTG 1 cut(s) 210
AfaI GTAC 1 cut(s) 652
AfiI CCNNNNNNNGG 2 cut(s) 286, 370
AgsI TTSAA 5 cut(s) 70, 423, 468, 740, 750
AjnI CCWGG 4 cut(s) 206, 664, 761, 817
AloI GAACNNNNNNTCC 4 cut(s) 418, 450, 609, 641
AluBI AGCT 6 cut(s) 56, 106, 148, 172, 593, 605
AluI AGCT 6 cut(s) 56, 106, 148, 172, 593, 605
Alw21I GWGCWC 1 cut(s) 46
Alw26I GTCTC 1 cut(s) 90
AlwNI CAGNNNCTG 1 cut(s) 437
Aor13HI TCCGGA 1 cut(s) 175
AoxI GGCC 6 cut(s) 25, 29, 271, 277, 815, 915
ApeKI GCWGC 1 cut(s) 718
ApoI RAATTY 6 cut(s) 122, 247, 307, 314, 396, 427
AspS9I GGNCC 1 cut(s) 915
AsuC2I CCSGG 2 cut(s) 14, 914
AsuHPI GGTGA 5 cut(s) 196, 404, 518, 539, 863
AsuII TTCGAA 1 cut(s) 580
BalI TGGCCA 1 cut(s) 273
Bbv12I GWGCWC 1 cut(s) 46
BbvI GCAGC 1 cut(s) 730
BccI CCATC 2 cut(s) 173, 694
BceAI ACGGC 2 cut(s) 40, 292
BciT130I CCWGG 4 cut(s) 208, 666, 763, 819
BciVI GTATCC 2 cut(s) 290, 671
BcnI CCSGG 2 cut(s) 14, 914
BcoDI GTCTC 1 cut(s) 90
BfaI CTAG 2 cut(s) 80, 549
BfmI CTRYAG 1 cut(s) 51
BfuI GTATCC 2 cut(s) 290, 671
BisI GCNGC 1 cut(s) 719
BlsI GCNGC 1 cut(s) 720
Bme1390I CCNGG 6 cut(s) 14, 208, 666, 763, 819, 914
BmgT120I GGNCC 1 cut(s) 915
BmiI GGNNCC 1 cut(s) 759
BmrFI CCNGG 6 cut(s) 14, 208, 666, 763, 819, 914
BmsI GCATC 3 cut(s) 170, 568, 844
BpmI CTGGAG 1 cut(s) 687
Bpu14I TTCGAA 1 cut(s) 580
BpuEI CTTGAG 1 cut(s) 640
BpuMI CCSGG 2 cut(s) 14, 914
BsaBI GATNNNNATC 1 cut(s) 644
BsaJI CCNNGG 4 cut(s) 274, 301, 664, 761
BsaWI WCCGGW 2 cut(s) 175, 562
BsaXI ACNNNNNCTCC 4 cut(s) 40, 70, 609, 639
Bsc4I CCNNNNNNNGG 2 cut(s) 286, 370
Bse118I RCCGGY 1 cut(s) 27
Bse1I ACTGG 1 cut(s) 475
Bse3DI GCAATG 1 cut(s) 889
Bse8I GATNNNNATC 1 cut(s) 644
BseAI TCCGGA 1 cut(s) 175
BseBI CCWGG 4 cut(s) 208, 666, 763, 819
BseDI CCNNGG 4 cut(s) 274, 301, 664, 761
BseGI GGATG 4 cut(s) 184, 493, 538, 559
BseJI GATNNNNATC 1 cut(s) 644
BseLI CCNNNNNNNGG 2 cut(s) 286, 370
BseMI GCAATG 1 cut(s) 889
BseNI ACTGG 1 cut(s) 475
BseRI GAGGAG 3 cut(s) 48, 156, 536
BseX3I CGGCCG 1 cut(s) 25
BseXI GCAGC 1 cut(s) 730
BseYI CCCAGC 1 cut(s) 847
Bsh1285I CGRYCG 1 cut(s) 28
BshFI GGCC 6 cut(s) 27, 31, 273, 279, 817, 917
BsiEI CGRYCG 1 cut(s) 28
BsiHKAI GWGCWC 1 cut(s) 46
BsiSI CCGG 5 cut(s) 13, 28, 176, 563, 913
BslI CCNNNNNNNGG 2 cut(s) 286, 370
BsmAI GTCTC 1 cut(s) 90
BsmI GAATGC 1 cut(s) 561
BsnI GGCC 6 cut(s) 27, 31, 273, 279, 817, 917
Bsp119I TTCGAA 1 cut(s) 580
Bsp1286I GDGCHC 1 cut(s) 46
Bsp13I TCCGGA 1 cut(s) 175
Bsp143I GATC 1 cut(s) 788
BspACI CCGC 1 cut(s) 621
BspANI GGCC 6 cut(s) 27, 31, 273, 279, 817, 917
BspEI TCCGGA 1 cut(s) 175
BspLI GGNNCC 1 cut(s) 759
BspQI GCTCTTC 1 cut(s) 600
BspT104I TTCGAA 1 cut(s) 580
BsrDI GCAATG 1 cut(s) 889
BsrFI RCCGGY 1 cut(s) 27
BsrI ACTGG 1 cut(s) 475
BssAI RCCGGY 1 cut(s) 27
BssECI CCNNGG 4 cut(s) 274, 301, 664, 761
BssMI GATC 1 cut(s) 788
BssT1I CCWWGG 1 cut(s) 301
Bst2UI CCWGG 4 cut(s) 208, 666, 763, 819
Bst4CI ACNGT 3 cut(s) 370, 410, 745
Bst6I CTCTTC 1 cut(s) 600
BstBI TTCGAA 1 cut(s) 580
BstC8I GCNNGC 2 cut(s) 29, 796
BstDEI CTNAG 2 cut(s) 219, 413
BstDSI CCRYGG 1 cut(s) 274
BstF5I GGATG 4 cut(s) 184, 493, 538, 559
BstKTI GATC 1 cut(s) 791
BstMAI GTCTC 1 cut(s) 90
BstMBI GATC 1 cut(s) 788
BstMCI CGRYCG 1 cut(s) 28
BstNI CCWGG 4 cut(s) 208, 666, 763, 819
BstNSI RCATGY 1 cut(s) 798
BstSCI CCNGG 6 cut(s) 12, 206, 664, 761, 817, 912
BstSFI CTRYAG 1 cut(s) 51
BstV1I GCAGC 1 cut(s) 730
BstZI CGGCCG 1 cut(s) 25
BsuI GTATCC 2 cut(s) 290, 671
BsuRI GGCC 6 cut(s) 27, 31, 273, 279, 817, 917
BtgI CCRYGG 1 cut(s) 274
BtsCI GGATG 4 cut(s) 184, 493, 538, 559
Cac8I GCNNGC 2 cut(s) 29, 796
CaiI CAGNNNCTG 1 cut(s) 437
Cfr10I RCCGGY 1 cut(s) 27
Cfr13I GGNCC 1 cut(s) 915
CsiI ACCWGGT 1 cut(s) 206
Csp6I GTAC 1 cut(s) 651
CspCI CAANNNNNGTGG 2 cut(s) 334, 369
CviAII CATG 2 cut(s) 733, 795
CviQI GTAC 1 cut(s) 651
DdeI CTNAG 2 cut(s) 219, 413
DpnI GATC 1 cut(s) 790
DpnII GATC 1 cut(s) 788
DraIII CACNNNGTG 1 cut(s) 210
EaeI YGGCCR 4 cut(s) 25, 29, 271, 277
EagI CGGCCG 1 cut(s) 25
Eam1104I CTCTTC 1 cut(s) 600
EarI CTCTTC 1 cut(s) 600
EclXI CGGCCG 1 cut(s) 25
Eco130I CCWWGG 1 cut(s) 301
Eco32I GATATC 1 cut(s) 202
Eco52I CGGCCG 1 cut(s) 25
Eco57I CTGAAG 1 cut(s) 581
EcoRI GAATTC 2 cut(s) 307, 427
EcoRII CCWGG 4 cut(s) 206, 664, 761, 817
EcoRV GATATC 1 cut(s) 202
EcoT14I CCWWGG 1 cut(s) 301
EcoT22I ATGCAT 3 cut(s) 561, 780, 889
ErhI CCWWGG 1 cut(s) 301
FaeI CATG 2 cut(s) 736, 798
FatI CATG 2 cut(s) 732, 794
FauI CCCGC 1 cut(s) 628
Fnu4HI GCNGC 1 cut(s) 719
FokI GGATG 4 cut(s) 191, 500, 545, 546
FseI GGCCGGCC 1 cut(s) 31
Fsp4HI GCNGC 1 cut(s) 719
FspBI CTAG 2 cut(s) 80, 549
GluI GCNGC 1 cut(s) 719
GsaI CCCAGC 1 cut(s) 851
GsuI CTGGAG 1 cut(s) 687
HaeIII GGCC 6 cut(s) 27, 31, 273, 279, 817, 917
HapII CCGG 5 cut(s) 13, 28, 176, 563, 913
Hin1II CATG 2 cut(s) 736, 798
HindIII AAGCTT 1 cut(s) 170
HinfI GANTC 2 cut(s) 215, 383
HpaII CCGG 5 cut(s) 13, 28, 176, 563, 913
HphI GGTGA 5 cut(s) 196, 404, 518, 539, 863
Hpy166II GTNNAC 1 cut(s) 476
Hpy188I TCNGA 1 cut(s) 600
Hpy188III TCNNGA 5 cut(s) 80, 93, 176, 232, 363
Hpy8I GTNNAC 1 cut(s) 476
Hpy99I CGWCG 1 cut(s) 12
HpyAV CCTTC 2 cut(s) 229, 497
HpyCH4III ACNGT 3 cut(s) 370, 410, 745
HpyCH4IV ACGT 1 cut(s) 19
HpyCH4V TGCA 6 cut(s) 327, 559, 644, 778, 798, 887
HpyF3I CTNAG 2 cut(s) 219, 413
HpySE526I ACGT 1 cut(s) 19
Hsp92II CATG 2 cut(s) 736, 798
Kpn2I TCCGGA 1 cut(s) 175
KroI GCCGGC 1 cut(s) 27
KroNI GCCGGC 1 cut(s) 29
Kzo9I GATC 1 cut(s) 788
LguI GCTCTTC 1 cut(s) 600
LmnI GCTCC 2 cut(s) 49, 61
Lsp1109I GCAGC 1 cut(s) 730
LweI GCATC 3 cut(s) 170, 568, 844
MabI ACCWGGT 1 cut(s) 206
MaeI CTAG 2 cut(s) 80, 549
MaeII ACGT 1 cut(s) 19
MaeIII GTNAC 2 cut(s) 20, 565
MalI GATC 1 cut(s) 790
MboI GATC 1 cut(s) 788
MboII GAAGA 4 cut(s) 142, 386, 548, 587
MhlI GDGCHC 1 cut(s) 46
MlsI TGGCCA 1 cut(s) 273
MluCI AATT 8 cut(s) 122, 247, 307, 314, 396, 427, 463, 839
MluNI TGGCCA 1 cut(s) 273
MmeI TCCRAC 1 cut(s) 71
MnlI CCTC 9 cut(s) 69, 134, 397, 514, 517, 523, 639, 662, 664
Mox20I TGGCCA 1 cut(s) 273
Mph1103I ATGCAT 3 cut(s) 561, 780, 889
MroI TCCGGA 1 cut(s) 175
MroNI GCCGGC 1 cut(s) 27
MscI TGGCCA 1 cut(s) 273
MseI TTAA 1 cut(s) 872
Msp20I TGGCCA 1 cut(s) 273
MspI CCGG 5 cut(s) 13, 28, 176, 563, 913
MspR9I CCNGG 6 cut(s) 14, 208, 666, 763, 819, 914
Mva1269I GAATGC 1 cut(s) 561
MvaI CCWGG 4 cut(s) 208, 666, 763, 819
NaeI GCCGGC 1 cut(s) 29
NciI CCSGG 2 cut(s) 14, 914
NdeII GATC 1 cut(s) 788
NgoMIV GCCGGC 1 cut(s) 27
NlaIII CATG 2 cut(s) 736, 798
NlaIV GGNNCC 1 cut(s) 759
NmuCI GTSAC 2 cut(s) 20, 565
NsiI ATGCAT 3 cut(s) 561, 780, 889
NspI RCATGY 1 cut(s) 798
NspV TTCGAA 1 cut(s) 580
PaeI GCATGC 1 cut(s) 798
PciSI GCTCTTC 1 cut(s) 600
PcsI WCGNNNNNNNCGW 1 cut(s) 16
PctI GAATGC 1 cut(s) 561
PdiI GCCGGC 1 cut(s) 29
PfeI GAWTC 2 cut(s) 215, 383
PflMI CCANNNNNTGG 1 cut(s) 286
PkrI GCNGC 1 cut(s) 720
Psp6I CCWGG 4 cut(s) 206, 664, 761, 817
PspFI CCCAGC 1 cut(s) 847
PspGI CCWGG 4 cut(s) 206, 664, 761, 817
PspN4I GGNNCC 1 cut(s) 759
PspPI GGNCC 1 cut(s) 915
PstNI CAGNNNCTG 1 cut(s) 437
RigI GGCCGGCC 1 cut(s) 31
RsaI GTAC 1 cut(s) 652
RsaNI GTAC 1 cut(s) 651
SapI GCTCTTC 1 cut(s) 600
SaqAI TTAA 1 cut(s) 872
SatI GCNGC 1 cut(s) 719
Sau3AI GATC 1 cut(s) 788
Sau96I GGNCC 1 cut(s) 915
ScrFI CCNGG 6 cut(s) 14, 208, 666, 763, 819, 914
SduI GDGCHC 1 cut(s) 46
SexAI ACCWGGT 1 cut(s) 206
SfaNI GCATC 3 cut(s) 170, 568, 844
SfcI CTRYAG 1 cut(s) 51
SfuI TTCGAA 1 cut(s) 580
SmlI CTYRAG 1 cut(s) 655
SmoI CTYRAG 1 cut(s) 655
SphI GCATGC 1 cut(s) 798
Sse9I AATT 8 cut(s) 122, 247, 307, 314, 396, 427, 463, 839
SsiI CCGC 1 cut(s) 621
SspMI CTAG 2 cut(s) 80, 549
StyD4I CCNGG 6 cut(s) 12, 206, 664, 761, 817, 912
StyI CCWWGG 1 cut(s) 301
TaaI ACNGT 3 cut(s) 370, 410, 745
TaiI ACGT 1 cut(s) 22
TaqI TCGA 3 cut(s) 231, 318, 580
TasI AATT 8 cut(s) 122, 247, 307, 314, 396, 427, 463, 839
TfiI GAWTC 2 cut(s) 215, 383
Tru1I TTAA 1 cut(s) 872
Tru9I TTAA 1 cut(s) 872
TseFI GTSAC 2 cut(s) 20, 565
TseI GCWGC 1 cut(s) 718
Tsp45I GTSAC 2 cut(s) 20, 565
TspDTI ATGAA 6 cut(s) 64, 375, 516, 549, 630, 798
TspGWI ACGGA 1 cut(s) 638
Van91I CCANNNNNTGG 1 cut(s) 286
XapI RAATTY 6 cut(s) 122, 247, 307, 314, 396, 427
XbaI TCTAGA 1 cut(s) 79
XceI RCATGY 1 cut(s) 798
XspI CTAG 2 cut(s) 80, 549
Zsp2I ATGCAT 3 cut(s) 561, 780, 889
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.