Rh7BG376200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000156
Physical Location & Seq
Reverse (-)
40491272 .. 40494901
3630 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG376200.1

Sequence Viewer

Length: 291 bp
ATGACTTCGTATCTTAGCCGGGAATTTGACCACCGGAAATTCGGTTCCCAGCCCACATTTCGTTCCACTACTCCCCACTTCTTGAAGACGAAGGAAAACCTTAAATCCAGTATTACGTCAAACTCAACTCGACCAAGACAAGGTGTATTACTCAATACGACAGGATCAGATCTTAGTGACGAAGCCACGAAGGAGTCCTTCTTGATGAGGTTAACGAGCTGGCTAACTAGTCTCAGGCTTTGTTCATGGAGTTCTGTTCCTCGTAAGTATAATAACGCAGTGTACAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

96

Amino Acids

11.01

Weight (kDa)

10.09

Isoelectric Point (pI)

30.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000156)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49475 AT3G18960 AT3G18960 AT3G18960 AT4G01580
fragaria_vesca FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14670 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14690 FvH4_1g14700 FvH4_1g29250 FvH4_6g29400 FvH4_6g38681 FvH4_6g38690 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_7g02010
malus_domestica MD00G1020600.v1.1 MD00G1022000.v1.1 MD00G1022100.v1.1 MD02G1159700.v1.1 MD02G1159800.v1.1 MD02G1159900.v1.1 MD02G1160000.v1.1 MD02G1160300.v1.1 MD15G1274100.v1.1 MD15G1274200.v1.1 MD15G1274400.v1.1 MD15G1302000.v1.1
prunus_persica Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.3G083400_v2.0.a1 Prupe.6G229600_v2.0.a1 Prupe.7G039600_v2.0.a1 Prupe.7G044500_v2.0.a1 Prupe.7G044800_v2.0.a1 Prupe.7G143100_v2.0.a1 Prupe.7G143500_v2.0.a1 Prupe.7G143600_v2.0.a1 Prupe.7G143700_v2.0.a1 Prupe.7G143800_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.8G072800_v2.0.a1 Prupe.8G072800_v2.0.a1
pyrus_communis pycom02g12620 pycom02g12630 pycom15g23750 pycom15g26490 pycom17g21160
rosa_chinensis RchiOBHm_Chr2g0103421 RchiOBHm_Chr2g0103431 RchiOBHm_Chr2g0103441 RchiOBHm_Chr2g0103491 RchiOBHm_Chr2g0103501 RchiOBHm_Chr2g0103521 RchiOBHm_Chr2g0103541 RchiOBHm_Chr2g0103551 RchiOBHm_Chr2g0103561 RchiOBHm_Chr2g0134821 RchiOBHm_Chr2g0152161 RchiOBHm_Chr2g0152181 RchiOBHm_Chr7g0227261 RchiOBHm_Chr7g0227351 RchiOBHm_Chr7g0227431
rosa_laevigata RLG00000001649 RLG00000001653 RLG00000001659 RLG00000017235 RLG00000017236 RLG00000017240 RLG00000017241 RLG00000017242 RLG00000017243 RLG00000017244 RLG00000017349 RLG00000019424 RLG00000020614 RLG00000020615
rosa_multiflora Rmu_co8247875.1_g000001 Rmu_co8429551.1_g000001 Rmu_sc0000173.1_g000009 Rmu_sc0000718.1_g000004 Rmu_sc0001530.1_g000001 Rmu_sc0001530.1_g000002 Rmu_sc0001530.1_g000004 Rmu_sc0001530.1_g000005 Rmu_sc0001852.1_g000023 Rmu_sc0001852.1_g000024 Rmu_sc0002434.1_g000001 Rmu_sc0002434.1_g000002 Rmu_sc0003043.1_g000016 Rmu_sc0003153.1_g000005 Rmu_sc0011039.1_g000001 Rmu_sc0031822.1_g000001
rosa_roxburghii Rroxscaffold_2G00095860 Rroxscaffold_2G00095870 Rroxscaffold_2G00109720 Rroxscaffold_2G00139530 Rroxscaffold_2G00139550 Rroxscaffold_2G00139570 Rroxscaffold_2G00139580 Rroxscaffold_2G00139630 Rroxscaffold_2G00139640 Rroxscaffold_4G00328430 Rroxscaffold_4G00328440 Rroxscaffold_4G00328450
rosa_rugosa Rorug02G0114900 Rorug02G0115000 Rorug02G0115000 Rorug02G0115200 Rorug02G0115300 Rorug02G0115400 Rorug02G0115500 Rorug02G0115600 Rorug02G0115600 Rorug02G0115600 Rorug02G0115700 Rorug02G0320300 Rorug02G0431300 Rorug02G0431300 Rorug06G0028200 Rorug07G0241300
rosa_samantha Rh2AG163200 Rh2AG163300 Rh2AG163700 Rh2AG163800 Rh2AG163900 Rh2AG164000 Rh2AG373400 Rh2AG492600 Rh2BG170300 Rh2BG170400 Rh2BG170800 Rh2BG170900 Rh2BG171000 Rh2BG171100 Rh2BG171200 Rh2BG377800 Rh2BG505000 Rh2BG505100 Rh2BG505200 Rh2CG170300 Rh2CG170700 Rh2CG479000 Rh2DG169100 Rh2DG169200 Rh2DG169300 Rh2DG516400 Rh7AG391200 Rh7BG376200 Rh7CG410200 Rh7CG411500 Rh7CG412000 Rh7CG412700 Rh7DG388800
rosa_wichuraiana Rw2G012830 Rw2G012840 Rw2G012870 Rw2G012880 Rw2G012890 Rw2G012900 Rw2G030310 Rw2G040470 Rw2G040480 Rw7G032720 Rw7G032730 Rw7G032750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 172
AcsI RAATTY 2 cut(s) 23, 38
AfaI GTAC 1 cut(s) 284
AfiI CCNNNNNNNGG 1 cut(s) 140
AgsI TTSAA 1 cut(s) 85
AhlI ACTAGT 1 cut(s) 227
AloI GAACNNNNNNTCC 2 cut(s) 28, 60
AluBI AGCT 2 cut(s) 219, 288
AluI AGCT 2 cut(s) 219, 288
Alw26I GTCTC 1 cut(s) 236
AlwI GGATC 1 cut(s) 172
ApoI RAATTY 2 cut(s) 23, 38
AsuC2I CCSGG 1 cut(s) 20
BbsI GAAGAC 1 cut(s) 92
BcnI CCSGG 1 cut(s) 20
BcoDI GTCTC 1 cut(s) 236
BcuI ACTAGT 1 cut(s) 227
BfaI CTAG 1 cut(s) 228
BglII AGATCT 1 cut(s) 169
Bme1390I CCNGG 1 cut(s) 20
BmiI GGNNCC 1 cut(s) 46
BmrFI CCNGG 1 cut(s) 20
BpiI GAAGAC 1 cut(s) 92
BpuMI CCSGG 1 cut(s) 20
BsaWI WCCGGW 1 cut(s) 33
Bsc4I CCNNNNNNNGG 1 cut(s) 140
Bse1I ACTGG 1 cut(s) 108
BseLI CCNNNNNNNGG 1 cut(s) 140
BseMII CTCAG 1 cut(s) 247
BseNI ACTGG 1 cut(s) 108
BseYI CCCAGC 1 cut(s) 48
BsiSI CCGG 2 cut(s) 19, 34
BslI CCNNNNNNNGG 1 cut(s) 140
BsmAI GTCTC 1 cut(s) 236
Bsp1407I TGTACA 1 cut(s) 282
Bsp143I GATC 2 cut(s) 164, 169
BspCNI CTCAG 1 cut(s) 246
BspLI GGNNCC 1 cut(s) 46
BspPI GGATC 1 cut(s) 172
BsrGI TGTACA 1 cut(s) 282
BsrI ACTGG 1 cut(s) 108
BssMI GATC 2 cut(s) 164, 169
BstAUI TGTACA 1 cut(s) 282
BstC8I GCNNGC 1 cut(s) 221
BstDEI CTNAG 3 cut(s) 14, 173, 233
BstKTI GATC 2 cut(s) 167, 172
BstMAI GTCTC 1 cut(s) 236
BstMBI GATC 2 cut(s) 164, 169
BstSCI CCNGG 1 cut(s) 18
BstV2I GAAGAC 1 cut(s) 92
BstX2I RGATCY 1 cut(s) 169
BstYI RGATCY 1 cut(s) 169
BtsI GCAGTG 1 cut(s) 285
BtsIMutI CAGTG 1 cut(s) 285
Cac8I GCNNGC 1 cut(s) 221
Csp6I GTAC 1 cut(s) 283
CviAII CATG 1 cut(s) 246
CviJI RGCY 7 cut(s) 18, 52, 185, 219, 223, 238, 288
CviKI_1 RGCY 7 cut(s) 18, 52, 185, 219, 223, 238, 288
CviQI GTAC 1 cut(s) 283
DdeI CTNAG 3 cut(s) 14, 173, 233
DpnI GATC 2 cut(s) 166, 171
DpnII GATC 2 cut(s) 164, 169
FaeI CATG 1 cut(s) 249
FaiI YATR 2 cut(s) 247, 270
FalI AAGNNNNNCTT 2 cut(s) 182, 214
FatI CATG 1 cut(s) 245
FspBI CTAG 1 cut(s) 228
GsaI CCCAGC 1 cut(s) 52
HapII CCGG 2 cut(s) 19, 34
Hin1II CATG 1 cut(s) 249
HincII GTYRAC 1 cut(s) 213
HindII GTYRAC 1 cut(s) 213
HinfI GANTC 1 cut(s) 194
HpaI GTTAAC 1 cut(s) 213
HpaII CCGG 2 cut(s) 19, 34
Hpy166II GTNNAC 2 cut(s) 213, 283
Hpy188I TCNGA 1 cut(s) 169
Hpy188III TCNNGA 2 cut(s) 82, 202
Hpy8I GTNNAC 2 cut(s) 213, 283
HpyAV CCTTC 3 cut(s) 85, 184, 208
HpyCH4IV ACGT 1 cut(s) 116
HpyF3I CTNAG 3 cut(s) 14, 173, 233
HpySE526I ACGT 1 cut(s) 116
Hsp92II CATG 1 cut(s) 249
KspAI GTTAAC 1 cut(s) 213
Kzo9I GATC 2 cut(s) 164, 169
LpnPI CCDG 7 cut(s) 32, 47, 62, 121, 147, 205, 220
MaeI CTAG 1 cut(s) 228
MaeII ACGT 1 cut(s) 116
MaeIII GTNAC 1 cut(s) 176
MalI GATC 2 cut(s) 166, 171
MboI GATC 2 cut(s) 164, 169
MboII GAAGA 1 cut(s) 97
MflI RGATCY 1 cut(s) 169
MluCI AATT 2 cut(s) 23, 38
MlyI GAGTC 1 cut(s) 203
MnlI CCTC 2 cut(s) 201, 270
MseI TTAA 2 cut(s) 102, 212
MspI CCGG 2 cut(s) 19, 34
MspR9I CCNGG 1 cut(s) 20
NciI CCSGG 1 cut(s) 20
NdeII GATC 2 cut(s) 164, 169
NlaIII CATG 1 cut(s) 249
NlaIV GGNNCC 1 cut(s) 46
NmuCI GTSAC 1 cut(s) 176
PleI GAGTC 1 cut(s) 202
PpsI GAGTC 1 cut(s) 202
PspFI CCCAGC 1 cut(s) 48
PspN4I GGNNCC 1 cut(s) 46
PsuI RGATCY 1 cut(s) 169
RsaI GTAC 1 cut(s) 284
RsaNI GTAC 1 cut(s) 283
SaqAI TTAA 2 cut(s) 102, 212
Sau3AI GATC 2 cut(s) 164, 169
SchI GAGTC 1 cut(s) 203
ScrFI CCNGG 1 cut(s) 20
SetI ASST 6 cut(s) 102, 119, 145, 212, 221, 290
SpeI ACTAGT 1 cut(s) 227
Sse9I AATT 2 cut(s) 23, 38
SspMI CTAG 1 cut(s) 228
StyD4I CCNGG 1 cut(s) 18
TaiI ACGT 1 cut(s) 119
TaqI TCGA 1 cut(s) 130
TasI AATT 2 cut(s) 23, 38
TatI WGTACW 1 cut(s) 282
Tru1I TTAA 2 cut(s) 102, 212
Tru9I TTAA 2 cut(s) 102, 212
TscAI CASTG 1 cut(s) 285
TseFI GTSAC 1 cut(s) 176
Tsp45I GTSAC 1 cut(s) 176
TspDTI ATGAA 1 cut(s) 234
TspRI CASTG 1 cut(s) 285
XapI RAATTY 2 cut(s) 23, 38
XspI CTAG 1 cut(s) 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.