Rroxscaffold_2G00139530

B3 domain-containing

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
77889742 .. 77892492
2751 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00139530.1

Sequence Viewer

Length: 969 bp
ATGAGTGGTGTTTGGCCTACGTTTTGTTCCACAACTCCCCATTTTTTCAAGATCATTCTGGAGAATACTTCTAGAGACATCAAACTTAAAATTCCAAAGAAATTTGTCAAGAGATATGGAGAACATCTCTCAAATTCAGTATGTCTTAAGATCCCAAGTGGTTGTGAATGGGAAGTGGGAGTGACGCAAAGCGGCAATAAGGTTTGGTTTGAGAAGGGCTGGCCTGCATTCTCTAAATTTTACTCCCTAGACTATGGTGCCTTCTTACTTTTTGGATATGAAGGAAATTCTAAATTCCAGGTTTGTATATTTGATACTAGTGCCACAGAGATTGCCTATCCCATCCATATAGAAGAATCTGATAACATTAATTGTGAAGATGACAACTCTGTTGAAGTCCTGGACGATTTCCCACATTCCTGCCCAAAAACAAGGGAGAAATCTCCATTACCATCTCCTATGCCTCACAAGAGAAGAAGAATAAGTTCAAATAGTAAAGAAAATTTTCAAGGGAAAAATGCTATTATCGGAAAAGACTATGGTGGAGGCTTGTCTAGCACTCAAAGTTTTCGAAAAGGAACACATAAGGTTTGTGGGAGGATGCATTCGTCAACAGCTAATGCAAAAACTATAGCTCTTGAAAGAGCTAATGATTTCAAATCCGAAAAACCTTTTTCAGTAGTCACCATTCATCCGTCATATCTCCATTATAATACTTTGAATGTACGAGCCAGTTTTGTCAAGAGTTTTGCTACACAAGAGCAACAGCTTGTGAAGCTTCAGGTGGGAGATAGATCTTGGCCTGTGAAGTTGAATTTCTATGATAAACATTCAACAGCTAAATTTTCTGCTGGATGGCATGCATTTTCCAACGACAATTGTTTGACTGATGGAGATGTTTGCATATTTGAGCTCATACAAATGAATGACGTTGTGCTGAAAGTTCACATTTTTAGATCCGTTGATTAG

Protein Analysis

322

Amino Acids

36.49

Weight (kDa)

8.73

Isoelectric Point (pI)

45.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 15 - 106 2e-14 B3 DNA binding domain
B3 PF02362 225 - 320 1.3e-13 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000156)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49475 AT3G18960 AT3G18960 AT3G18960 AT4G01580
fragaria_vesca FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14670 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14690 FvH4_1g14700 FvH4_1g29250 FvH4_6g29400 FvH4_6g38681 FvH4_6g38690 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_7g02010
malus_domestica MD00G1020600.v1.1 MD00G1022000.v1.1 MD00G1022100.v1.1 MD02G1159700.v1.1 MD02G1159800.v1.1 MD02G1159900.v1.1 MD02G1160000.v1.1 MD02G1160300.v1.1 MD15G1274100.v1.1 MD15G1274200.v1.1 MD15G1274400.v1.1 MD15G1302000.v1.1
prunus_persica Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.3G083400_v2.0.a1 Prupe.6G229600_v2.0.a1 Prupe.7G039600_v2.0.a1 Prupe.7G044500_v2.0.a1 Prupe.7G044800_v2.0.a1 Prupe.7G143100_v2.0.a1 Prupe.7G143500_v2.0.a1 Prupe.7G143600_v2.0.a1 Prupe.7G143700_v2.0.a1 Prupe.7G143800_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.8G072800_v2.0.a1 Prupe.8G072800_v2.0.a1
pyrus_communis pycom02g12620 pycom02g12630 pycom15g23750 pycom15g26490 pycom17g21160
rosa_chinensis RchiOBHm_Chr2g0103421 RchiOBHm_Chr2g0103431 RchiOBHm_Chr2g0103441 RchiOBHm_Chr2g0103491 RchiOBHm_Chr2g0103501 RchiOBHm_Chr2g0103521 RchiOBHm_Chr2g0103541 RchiOBHm_Chr2g0103551 RchiOBHm_Chr2g0103561 RchiOBHm_Chr2g0134821 RchiOBHm_Chr2g0152161 RchiOBHm_Chr2g0152181 RchiOBHm_Chr7g0227261 RchiOBHm_Chr7g0227351 RchiOBHm_Chr7g0227431
rosa_laevigata RLG00000001649 RLG00000001653 RLG00000001659 RLG00000017235 RLG00000017236 RLG00000017240 RLG00000017241 RLG00000017242 RLG00000017243 RLG00000017244 RLG00000017349 RLG00000019424 RLG00000020614 RLG00000020615
rosa_multiflora Rmu_co8247875.1_g000001 Rmu_co8429551.1_g000001 Rmu_sc0000173.1_g000009 Rmu_sc0000718.1_g000004 Rmu_sc0001530.1_g000001 Rmu_sc0001530.1_g000002 Rmu_sc0001530.1_g000004 Rmu_sc0001530.1_g000005 Rmu_sc0001852.1_g000023 Rmu_sc0001852.1_g000024 Rmu_sc0002434.1_g000001 Rmu_sc0002434.1_g000002 Rmu_sc0003043.1_g000016 Rmu_sc0003153.1_g000005 Rmu_sc0011039.1_g000001 Rmu_sc0031822.1_g000001
rosa_roxburghii Rroxscaffold_2G00095860 Rroxscaffold_2G00095870 Rroxscaffold_2G00109720 Rroxscaffold_2G00139530 Rroxscaffold_2G00139550 Rroxscaffold_2G00139570 Rroxscaffold_2G00139580 Rroxscaffold_2G00139630 Rroxscaffold_2G00139640 Rroxscaffold_4G00328430 Rroxscaffold_4G00328440 Rroxscaffold_4G00328450
rosa_rugosa Rorug02G0114900 Rorug02G0115000 Rorug02G0115000 Rorug02G0115200 Rorug02G0115300 Rorug02G0115400 Rorug02G0115500 Rorug02G0115600 Rorug02G0115600 Rorug02G0115600 Rorug02G0115700 Rorug02G0320300 Rorug02G0431300 Rorug02G0431300 Rorug06G0028200 Rorug07G0241300
rosa_samantha Rh2AG163200 Rh2AG163300 Rh2AG163700 Rh2AG163800 Rh2AG163900 Rh2AG164000 Rh2AG373400 Rh2AG492600 Rh2BG170300 Rh2BG170400 Rh2BG170800 Rh2BG170900 Rh2BG171000 Rh2BG171100 Rh2BG171200 Rh2BG377800 Rh2BG505000 Rh2BG505100 Rh2BG505200 Rh2CG170300 Rh2CG170700 Rh2CG479000 Rh2DG169100 Rh2DG169200 Rh2DG169300 Rh2DG516400 Rh7AG391200 Rh7BG376200 Rh7CG410200 Rh7CG411500 Rh7CG412000 Rh7CG412700 Rh7DG388800
rosa_wichuraiana Rw2G012830 Rw2G012840 Rw2G012870 Rw2G012880 Rw2G012890 Rw2G012900 Rw2G030310 Rw2G040470 Rw2G040480 Rw7G032720 Rw7G032730 Rw7G032750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 711
AccB1I GGYRCC 1 cut(s) 257
AciI CCGC 1 cut(s) 192
AclWI GGATC 2 cut(s) 145, 951
AcsI RAATTY 9 cut(s) 90, 101, 133, 236, 286, 293, 502, 814, 842
AcuI CTGAAG 1 cut(s) 764
AfaI GTAC 1 cut(s) 726
AflII CTTAAG 1 cut(s) 146
AgsI TTSAA 9 cut(s) 49, 395, 489, 509, 641, 658, 721, 814, 834
AhlI ACTAGT 1 cut(s) 317
AjnI CCWGG 2 cut(s) 297, 399
AluBI AGCT 7 cut(s) 617, 635, 647, 769, 778, 839, 913
AluI AGCT 7 cut(s) 617, 635, 647, 769, 778, 839, 913
Alw21I GWGCWC 1 cut(s) 915
Alw26I GTCTC 1 cut(s) 69
AlwI GGATC 2 cut(s) 145, 951
AoxI GGCC 3 cut(s) 14, 221, 800
ApoI RAATTY 9 cut(s) 90, 101, 133, 236, 286, 293, 502, 814, 842
AseI ATTAAT 1 cut(s) 369
Asp700I GAANNNNTTC 2 cut(s) 484, 504
AsuHPI GGTGA 1 cut(s) 676
AsuII TTCGAA 1 cut(s) 571
BanI GGYRCC 1 cut(s) 257
BanII GRGCYC 1 cut(s) 915
Bbv12I GWGCWC 1 cut(s) 915
BccI CCATC 4 cut(s) 350, 460, 849, 884
BciT130I CCWGG 2 cut(s) 299, 401
BcoDI GTCTC 1 cut(s) 69
BcuI ACTAGT 1 cut(s) 317
BfaI CTAG 4 cut(s) 72, 248, 318, 555
BfmI CTRYAG 1 cut(s) 630
BfrI CTTAAG 1 cut(s) 146
BglII AGATCT 1 cut(s) 794
BisI GCNGC 1 cut(s) 193
BlsI GCNGC 1 cut(s) 194
Bme1390I CCNGG 2 cut(s) 299, 401
BmiI GGNNCC 1 cut(s) 259
BmrFI CCNGG 2 cut(s) 299, 401
BmsI GCATC 1 cut(s) 591
BplI GAGNNNNNCTC 2 cut(s) 111, 143
BpmI CTGGAG 1 cut(s) 80
Bpu14I TTCGAA 1 cut(s) 571
Bse1I ACTGG 1 cut(s) 732
BseBI CCWGG 2 cut(s) 299, 401
BseGI GGATG 4 cut(s) 342, 606, 691, 860
BseNI ACTGG 1 cut(s) 732
BshFI GGCC 3 cut(s) 16, 223, 802
BshNI GGYRCC 1 cut(s) 257
BsiHKAI GWGCWC 1 cut(s) 915
BsmAI GTCTC 1 cut(s) 69
BsmI GAATGC 2 cut(s) 227, 604
BsnI GGCC 3 cut(s) 16, 223, 802
Bsp119I TTCGAA 1 cut(s) 571
Bsp1286I GDGCHC 1 cut(s) 915
Bsp143I GATC 4 cut(s) 51, 150, 794, 956
BspACI CCGC 1 cut(s) 192
BspANI GGCC 3 cut(s) 16, 223, 802
BspLI GGNNCC 1 cut(s) 259
BspPI GGATC 2 cut(s) 145, 951
BspT104I TTCGAA 1 cut(s) 571
BspT107I GGYRCC 1 cut(s) 257
BspTI CTTAAG 1 cut(s) 146
BsrI ACTGG 1 cut(s) 732
BssMI GATC 4 cut(s) 51, 150, 794, 956
Bst2UI CCWGG 2 cut(s) 299, 401
BstAFI CTTAAG 1 cut(s) 146
BstBI TTCGAA 1 cut(s) 571
BstC8I GCNNGC 3 cut(s) 221, 225, 861
BstF5I GGATG 4 cut(s) 342, 606, 691, 860
BstKTI GATC 4 cut(s) 54, 153, 797, 959
BstMAI GTCTC 1 cut(s) 69
BstMBI GATC 4 cut(s) 51, 150, 794, 956
BstMWI GCNNNNNNNGC 2 cut(s) 555, 775
BstNI CCWGG 2 cut(s) 299, 401
BstNSI RCATGY 1 cut(s) 863
BstSCI CCNGG 2 cut(s) 297, 399
BstSFI CTRYAG 1 cut(s) 630
BstX2I RGATCY 3 cut(s) 150, 794, 956
BstYI RGATCY 3 cut(s) 150, 794, 956
BsuRI GGCC 3 cut(s) 16, 223, 802
BtsCI GGATG 4 cut(s) 342, 606, 691, 860
Cac8I GCNNGC 3 cut(s) 221, 225, 861
CseI GACGC 1 cut(s) 193
Csp6I GTAC 1 cut(s) 725
CspCI CAANNNNNGTGG 2 cut(s) 313, 348
CviAII CATG 1 cut(s) 860
CviQI GTAC 1 cut(s) 725
DpnI GATC 4 cut(s) 53, 152, 796, 958
DpnII GATC 4 cut(s) 51, 150, 794, 956
Ecl136II GAGCTC 1 cut(s) 913
Eco24I GRGCYC 1 cut(s) 915
Eco53kI GAGCTC 1 cut(s) 913
Eco57I CTGAAG 1 cut(s) 764
EcoICRI GAGCTC 1 cut(s) 913
EcoRII CCWGG 2 cut(s) 297, 399
EcoT22I ATGCAT 2 cut(s) 606, 865
EcoT38I GRGCYC 1 cut(s) 915
FaeI CATG 1 cut(s) 863
FatI CATG 1 cut(s) 859
Fnu4HI GCNGC 1 cut(s) 193
FokI GGATG 4 cut(s) 329, 613, 678, 867
FriOI GRGCYC 1 cut(s) 915
Fsp4HI GCNGC 1 cut(s) 193
FspBI CTAG 4 cut(s) 72, 248, 318, 555
GluI GCNGC 1 cut(s) 193
GsuI CTGGAG 1 cut(s) 80
HaeIII GGCC 3 cut(s) 16, 223, 802
HgaI GACGC 1 cut(s) 193
Hin1II CATG 1 cut(s) 863
HincII GTYRAC 1 cut(s) 612
HindII GTYRAC 1 cut(s) 612
HindIII AAGCTT 1 cut(s) 776
HinfI GANTC 1 cut(s) 356
HphI GGTGA 1 cut(s) 676
Hpy166II GTNNAC 2 cut(s) 612, 946
Hpy188I TCNGA 3 cut(s) 361, 530, 664
Hpy188III TCNNGA 6 cut(s) 49, 59, 72, 109, 638, 742
Hpy8I GTNNAC 2 cut(s) 612, 946
HpyAV CCTTC 3 cut(s) 208, 271, 275
HpyCH4IV ACGT 2 cut(s) 20, 930
HpyCH4V TGCA 5 cut(s) 227, 604, 623, 863, 903
HpyF10VI GCNNNNNNNGC 2 cut(s) 555, 775
HpySE526I ACGT 2 cut(s) 20, 930
Hsp92II CATG 1 cut(s) 863
Kzo9I GATC 4 cut(s) 51, 150, 794, 956
LweI GCATC 1 cut(s) 591
MaeI CTAG 4 cut(s) 72, 248, 318, 555
MaeII ACGT 2 cut(s) 20, 930
MaeIII GTNAC 2 cut(s) 181, 682
MalI GATC 4 cut(s) 53, 152, 796, 958
MboI GATC 4 cut(s) 51, 150, 794, 956
MboII GAAGA 4 cut(s) 365, 389, 486, 489
MfeI CAATTG 1 cut(s) 877
MflI RGATCY 3 cut(s) 150, 794, 956
MhlI GDGCHC 1 cut(s) 915
MmeI TCCRAC 1 cut(s) 894
MnlI CCTC 3 cut(s) 474, 539, 591
Mph1103I ATGCAT 2 cut(s) 606, 865
MroXI GAANNNNTTC 2 cut(s) 484, 504
MseI TTAA 3 cut(s) 87, 147, 369
MslI CAYNNNNRTG 1 cut(s) 920
MspCI CTTAAG 1 cut(s) 146
MspR9I CCNGG 2 cut(s) 299, 401
MunI CAATTG 1 cut(s) 877
Mva1269I GAATGC 2 cut(s) 227, 604
MvaI CCWGG 2 cut(s) 299, 401
MwoI GCNNNNNNNGC 2 cut(s) 555, 775
NdeII GATC 4 cut(s) 51, 150, 794, 956
NlaIII CATG 1 cut(s) 863
NlaIV GGNNCC 1 cut(s) 259
NmuCI GTSAC 2 cut(s) 181, 682
NsiI ATGCAT 2 cut(s) 606, 865
NspI RCATGY 1 cut(s) 863
NspV TTCGAA 1 cut(s) 571
PaeI GCATGC 1 cut(s) 863
PctI GAATGC 2 cut(s) 227, 604
PdmI GAANNNNTTC 2 cut(s) 484, 504
PfeI GAWTC 1 cut(s) 356
PfoI TCCNGGA 1 cut(s) 399
PkrI GCNGC 1 cut(s) 194
PshBI ATTAAT 1 cut(s) 369
PsiI TTATAA 1 cut(s) 711
Psp124BI GAGCTC 1 cut(s) 915
Psp6I CCWGG 2 cut(s) 297, 399
PspGI CCWGG 2 cut(s) 297, 399
PspN4I GGNNCC 1 cut(s) 259
PsuI RGATCY 3 cut(s) 150, 794, 956
RsaI GTAC 1 cut(s) 726
RsaNI GTAC 1 cut(s) 725
RseI CAYNNNNRTG 1 cut(s) 920
SacI GAGCTC 1 cut(s) 915
SaqAI TTAA 3 cut(s) 87, 147, 369
SatI GCNGC 1 cut(s) 193
Sau3AI GATC 4 cut(s) 51, 150, 794, 956
ScrFI CCNGG 2 cut(s) 299, 401
SduI GDGCHC 1 cut(s) 915
SfaNI GCATC 1 cut(s) 591
SfcI CTRYAG 1 cut(s) 630
SfuI TTCGAA 1 cut(s) 571
SmiMI CAYNNNNRTG 1 cut(s) 920
SmlI CTYRAG 1 cut(s) 146
SmoI CTYRAG 1 cut(s) 146
SpeI ACTAGT 1 cut(s) 317
SphI GCATGC 1 cut(s) 863
SsiI CCGC 1 cut(s) 192
SspMI CTAG 4 cut(s) 72, 248, 318, 555
SstI GAGCTC 1 cut(s) 915
StyD4I CCNGG 2 cut(s) 297, 399
TaiI ACGT 2 cut(s) 23, 933
TaqI TCGA 1 cut(s) 571
TauI GCSGC 1 cut(s) 195
TfiI GAWTC 1 cut(s) 356
Tru1I TTAA 3 cut(s) 87, 147, 369
Tru9I TTAA 3 cut(s) 87, 147, 369
TseFI GTSAC 2 cut(s) 181, 682
Tsp45I GTSAC 2 cut(s) 181, 682
TspDTI ATGAA 3 cut(s) 294, 680, 938
TspGWI ACGGA 2 cut(s) 684, 949
Vha464I CTTAAG 1 cut(s) 146
VspI ATTAAT 1 cut(s) 369
XapI RAATTY 9 cut(s) 90, 101, 133, 236, 286, 293, 502, 814, 842
XbaI TCTAGA 1 cut(s) 71
XceI RCATGY 1 cut(s) 863
XmnI GAANNNNTTC 2 cut(s) 484, 504
XspI CTAG 4 cut(s) 72, 248, 318, 555
Zsp2I ATGCAT 2 cut(s) 606, 865
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.