Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0000156

Physical Location & Seq

Genomic Coordinates Reverse (-)

23292067 .. 23293248

Gene Structure 1182 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G229600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGTCTGCTTCTCGTCGCCAGAAAATTGATCATGAATGGCCAGCATTTTCTGCTACCACTCCACTGTTTCTCAAGATGATCCTAGACGACACTTCTAGAGACACAAAACTTAGAATACCGAAGAGTTTCGTGAAGAAATATGAAAAACATCTATCAAATCCAGTACATTTGAAGCTTCCAAGTGGTTCAGAATGGGAAGTAGAAGTGACAACATGTGATGGTGAGGTTTGGCTTGACAGGGGTTGGCCAGAGTTCTCTAAGTTTTACTCTCTAGAGCAGGGTGGCTCCCTAGTTTTCAAATATGATGTGAACTCAAAATTCCAAGTTTGCATATTGGATGCAAAAACCAATGAGGATGATGAAAATAACTCTGTTGAAATCTTGGAGGATTATGATGATGAAAATGATAATTCTGCTGAAATTTTTGGGGATTATCAACCCTGCCCAAAAACAAGGCAGAAGTCTGGTCCATTGTCATGTCCTCTGCCTCGCAAGAAAACCAGATTAAGTACTCATTCTTCACCTGAAATATCATCATCTTCATCTAAGAGGGTTCATGTACCACTTAGTTTCTCCAAGCATTTCATTAAATTGGAGAAACAAACCGCCAAACTTCTGGTCAGAAAGAAATCGTGTTGTGTGAGTTTGATTGCTCATTCTGTTAACACATTTCCATTTTCTGTTGGCTGGGCCGCTTTTGCAAGGGAAAATTGTTTGAGAGCAAGAGATGTTTGCATCTTCGAGCTTGTCGACAAAAACGACATTTCACTGAAAGTTCACATGTTCAGATGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

265

Amino Acids

30.23

Weight (kDa)

8.3

Isoelectric Point (pI)

40.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000156)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49475 AT3G18960 AT3G18960 AT3G18960 AT4G01580
fragaria_vesca	FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14670 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14690 FvH4_1g14700 FvH4_1g29250 FvH4_6g29400 FvH4_6g38681 FvH4_6g38690 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_7g02010
malus_domestica	MD00G1020600.v1.1 MD00G1022000.v1.1 MD00G1022100.v1.1 MD02G1159700.v1.1 MD02G1159800.v1.1 MD02G1159900.v1.1 MD02G1160000.v1.1 MD02G1160300.v1.1 MD15G1274100.v1.1 MD15G1274200.v1.1 MD15G1274400.v1.1 MD15G1302000.v1.1
prunus_persica	Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.3G083400_v2.0.a1 Prupe.6G229600_v2.0.a1 Prupe.7G039600_v2.0.a1 Prupe.7G044500_v2.0.a1 Prupe.7G044800_v2.0.a1 Prupe.7G143100_v2.0.a1 Prupe.7G143500_v2.0.a1 Prupe.7G143600_v2.0.a1 Prupe.7G143700_v2.0.a1 Prupe.7G143800_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.8G072800_v2.0.a1 Prupe.8G072800_v2.0.a1
pyrus_communis	pycom02g12620 pycom02g12630 pycom15g23750 pycom15g26490 pycom17g21160
rosa_chinensis	RchiOBHm_Chr2g0103421 RchiOBHm_Chr2g0103431 RchiOBHm_Chr2g0103441 RchiOBHm_Chr2g0103491 RchiOBHm_Chr2g0103501 RchiOBHm_Chr2g0103521 RchiOBHm_Chr2g0103541 RchiOBHm_Chr2g0103551 RchiOBHm_Chr2g0103561 RchiOBHm_Chr2g0134821 RchiOBHm_Chr2g0152161 RchiOBHm_Chr2g0152181 RchiOBHm_Chr7g0227261 RchiOBHm_Chr7g0227351 RchiOBHm_Chr7g0227431
rosa_laevigata	RLG00000001649 RLG00000001653 RLG00000001659 RLG00000017235 RLG00000017236 RLG00000017240 RLG00000017241 RLG00000017242 RLG00000017243 RLG00000017244 RLG00000017349 RLG00000019424 RLG00000020614 RLG00000020615
rosa_multiflora	Rmu_co8247875.1_g000001 Rmu_co8429551.1_g000001 Rmu_sc0000173.1_g000009 Rmu_sc0000718.1_g000004 Rmu_sc0001530.1_g000001 Rmu_sc0001530.1_g000002 Rmu_sc0001530.1_g000004 Rmu_sc0001530.1_g000005 Rmu_sc0001852.1_g000023 Rmu_sc0001852.1_g000024 Rmu_sc0002434.1_g000001 Rmu_sc0002434.1_g000002 Rmu_sc0003043.1_g000016 Rmu_sc0003153.1_g000005 Rmu_sc0011039.1_g000001 Rmu_sc0031822.1_g000001
rosa_roxburghii	Rroxscaffold_2G00095860 Rroxscaffold_2G00095870 Rroxscaffold_2G00109720 Rroxscaffold_2G00139530 Rroxscaffold_2G00139550 Rroxscaffold_2G00139570 Rroxscaffold_2G00139580 Rroxscaffold_2G00139630 Rroxscaffold_2G00139640 Rroxscaffold_4G00328430 Rroxscaffold_4G00328440 Rroxscaffold_4G00328450
rosa_rugosa	Rorug02G0114900 Rorug02G0115000 Rorug02G0115000 Rorug02G0115200 Rorug02G0115300 Rorug02G0115400 Rorug02G0115500 Rorug02G0115600 Rorug02G0115600 Rorug02G0115600 Rorug02G0115700 Rorug02G0320300 Rorug02G0431300 Rorug02G0431300 Rorug06G0028200 Rorug07G0241300
rosa_samantha	Rh2AG163200 Rh2AG163300 Rh2AG163700 Rh2AG163800 Rh2AG163900 Rh2AG164000 Rh2AG373400 Rh2AG492600 Rh2BG170300 Rh2BG170400 Rh2BG170800 Rh2BG170900 Rh2BG171000 Rh2BG171100 Rh2BG171200 Rh2BG377800 Rh2BG505000 Rh2BG505100 Rh2BG505200 Rh2CG170300 Rh2CG170700 Rh2CG479000 Rh2DG169100 Rh2DG169200 Rh2DG169300 Rh2DG516400 Rh7AG391200 Rh7BG376200 Rh7CG410200 Rh7CG411500 Rh7CG412000 Rh7CG412700 Rh7DG388800
rosa_wichuraiana	Rw2G012830 Rw2G012840 Rw2G012870 Rw2G012880 Rw2G012890 Rw2G012900 Rw2G030310 Rw2G040470 Rw2G040480 Rw7G032720 Rw7G032730 Rw7G032750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	750
AciI	CCGC	2 cut(s)	606, 693
AclWI	GGATC	1 cut(s)	73
AcoI	YGGCCR	2 cut(s)	38, 245
AcsI	RAATTY	2 cut(s)	317, 420
AfaI	GTAC	3 cut(s)	165, 511, 561
AflIII	ACRYGT	2 cut(s)	212, 780
AgsI	TTSAA	3 cut(s)	172, 298, 377
AluBI	AGCT	2 cut(s)	175, 745
AluI	AGCT	2 cut(s)	175, 745
Alw26I	GTCTC	1 cut(s)	93
AlwI	GGATC	1 cut(s)	73
AlwNI	CAGNNNCTG	1 cut(s)	792
AoxI	GGCC	3 cut(s)	38, 245, 690
ApoI	RAATTY	2 cut(s)	317, 420
ArsI	GACNNNNNNTTYG	2 cut(s)	603, 635
Asp700I	GAANNNNTTC	1 cut(s)	125
AspS9I	GGNCC	2 cut(s)	467, 690
AsuHPI	GGTGA	2 cut(s)	233, 513
AvaII	GGWCC	1 cut(s)	467
BalI	TGGCCA	2 cut(s)	40, 247
BarI	GAAGNNNNNNTAC	2 cut(s)	502, 534
BccI	CCATC	1 cut(s)	212
BclI	TGATCA	1 cut(s)	28
BcoDI	GTCTC	1 cut(s)	93
BfaI	CTAG	4 cut(s)	83, 96, 272, 290
BisI	GCNGC	1 cut(s)	693
BlsI	GCNGC	1 cut(s)	694
BmcAI	AGTACT	1 cut(s)	511
Bme18I	GGWCC	1 cut(s)	467
BmgT120I	GGNCC	2 cut(s)	467, 690
BmiI	GGNNCC	1 cut(s)	286
BmsI	GCATC	3 cut(s)	328, 744, 779
BpuEI	CTTGAG	1 cut(s)	56
Bse1I	ACTGG	1 cut(s)	161
BseGI	GGATG	2 cut(s)	343, 361
BseNI	ACTGG	1 cut(s)	161
BseYI	CCCAGC	1 cut(s)	687
BshFI	GGCC	3 cut(s)	40, 247, 692
BsmAI	GTCTC	1 cut(s)	93
BsnI	GGCC	3 cut(s)	40, 247, 692
Bsp143I	GATC	2 cut(s)	28, 78
BspACI	CCGC	2 cut(s)	606, 693
BspANI	GGCC	3 cut(s)	40, 247, 692
BspHI	TCATGA	1 cut(s)	31
BspLI	GGNNCC	1 cut(s)	286
BspPI	GGATC	1 cut(s)	73
BsrI	ACTGG	1 cut(s)	161
BssMI	GATC	2 cut(s)	28, 78
Bst4CI	ACNGT	1 cut(s)	66
Bst6I	CTCTTC	1 cut(s)	116
BstAPI	GCANNNNNTGC	1 cut(s)	50
BstC8I	GCNNGC	1 cut(s)	42
BstDEI	CTNAG	4 cut(s)	110, 258, 546, 566
BstF5I	GGATG	2 cut(s)	343, 361
BstKTI	GATC	2 cut(s)	31, 81
BstMAI	GTCTC	1 cut(s)	93
BstMBI	GATC	2 cut(s)	28, 78
BstMWI	GCNNNNNNNGC	2 cut(s)	50, 698
BstNSI	RCATGY	2 cut(s)	216, 784
BstXI	CCANNNNNNTGG	1 cut(s)	616
BsuRI	GGCC	3 cut(s)	40, 247, 692
BtsCI	GGATG	2 cut(s)	343, 361
BtsIMutI	CAGTG	2 cut(s)	62, 767
Cac8I	GCNNGC	1 cut(s)	42
CaiI	CAGNNNCTG	1 cut(s)	792
CciI	TCATGA	1 cut(s)	31
Cfr13I	GGNCC	2 cut(s)	467, 690
Csp6I	GTAC	3 cut(s)	164, 510, 560
CviAII	CATG	5 cut(s)	32, 213, 477, 557, 781
CviJI	RGCY	8 cut(s)	40, 175, 232, 247, 285, 687, 692, 745
CviKI_1	RGCY	8 cut(s)	40, 175, 232, 247, 285, 687, 692, 745
CviQI	GTAC	3 cut(s)	164, 510, 560
DdeI	CTNAG	4 cut(s)	110, 258, 546, 566
DpnI	GATC	2 cut(s)	30, 80
DpnII	GATC	2 cut(s)	28, 78
EaeI	YGGCCR	2 cut(s)	38, 245
Eam1104I	CTCTTC	1 cut(s)	116
EarI	CTCTTC	1 cut(s)	116
Eco47I	GGWCC	1 cut(s)	467
FaeI	CATG	5 cut(s)	35, 216, 480, 560, 784
FaiI	YATR	9 cut(s)	33, 141, 214, 303, 332, 393, 478, 558, 782
FatI	CATG	5 cut(s)	31, 212, 476, 556, 780
FbaI	TGATCA	1 cut(s)	28
FblI	GTMKAC	1 cut(s)	750
Fnu4HI	GCNGC	1 cut(s)	693
FokI	GGATG	2 cut(s)	350, 368
Fsp4HI	GCNGC	1 cut(s)	693
FspBI	CTAG	4 cut(s)	83, 96, 272, 290
GluI	GCNGC	1 cut(s)	693
GsaI	CCCAGC	1 cut(s)	691
HaeIII	GGCC	3 cut(s)	40, 247, 692
Hin1II	CATG	5 cut(s)	35, 216, 480, 560, 784
HincII	GTYRAC	2 cut(s)	664, 751
HindII	GTYRAC	2 cut(s)	664, 751
HindIII	AAGCTT	1 cut(s)	173
HpaI	GTTAAC	1 cut(s)	664
HphI	GGTGA	2 cut(s)	233, 513
Hpy166II	GTNNAC	4 cut(s)	310, 664, 751, 778
Hpy188I	TCNGA	3 cut(s)	190, 623, 788
Hpy188III	TCNNGA	5 cut(s)	32, 73, 96, 130, 272
Hpy8I	GTNNAC	4 cut(s)	310, 664, 751, 778
Hpy99I	CGWCG	1 cut(s)	18
HpyCH4III	ACNGT	1 cut(s)	66
HpyCH4V	TGCA	4 cut(s)	330, 341, 701, 735
HpyF10VI	GCNNNNNNNGC	2 cut(s)	50, 698
HpyF3I	CTNAG	4 cut(s)	110, 258, 546, 566
Hsp92II	CATG	5 cut(s)	35, 216, 480, 560, 784
Ksp22I	TGATCA	1 cut(s)	28
KspAI	GTTAAC	1 cut(s)	664
Kzo9I	GATC	2 cut(s)	28, 78
LmnI	GCTCC	1 cut(s)	290
LweI	GCATC	3 cut(s)	328, 744, 779
MaeI	CTAG	4 cut(s)	83, 96, 272, 290
MaeIII	GTNAC	1 cut(s)	205
MalI	GATC	2 cut(s)	30, 80
MboI	GATC	2 cut(s)	28, 78
MboII	GAAGA	5 cut(s)	133, 145, 510, 531, 730
MlsI	TGGCCA	2 cut(s)	40, 247
MluCI	AATT	6 cut(s)	24, 317, 409, 420, 590, 709
MluNI	TGGCCA	2 cut(s)	40, 247
MnlI	CCTC	6 cut(s)	217, 346, 379, 492, 498, 543
Mox20I	TGGCCA	2 cut(s)	40, 247
MroXI	GAANNNNTTC	1 cut(s)	125
MscI	TGGCCA	2 cut(s)	40, 247
MseI	TTAA	3 cut(s)	506, 588, 663
MslI	CAYNNNNRTG	1 cut(s)	475
Msp20I	TGGCCA	2 cut(s)	40, 247
MwoI	GCNNNNNNNGC	2 cut(s)	50, 698
NdeII	GATC	2 cut(s)	28, 78
NlaIII	CATG	5 cut(s)	35, 216, 480, 560, 784
NlaIV	GGNNCC	1 cut(s)	286
NmuCI	GTSAC	1 cut(s)	205
NspI	RCATGY	2 cut(s)	216, 784
PagI	TCATGA	1 cut(s)	31
PciI	ACATGT	2 cut(s)	212, 780
PcsI	WCGNNNNNNNCGW	2 cut(s)	747, 756
PdmI	GAANNNNTTC	1 cut(s)	125
PkrI	GCNGC	1 cut(s)	694
PscI	ACATGT	2 cut(s)	212, 780
PspFI	CCCAGC	1 cut(s)	687
PspN4I	GGNNCC	1 cut(s)	286
PspPI	GGNCC	2 cut(s)	467, 690
PstNI	CAGNNNCTG	1 cut(s)	792
RsaI	GTAC	3 cut(s)	165, 511, 561
RsaNI	GTAC	3 cut(s)	164, 510, 560
RseI	CAYNNNNRTG	1 cut(s)	475
SalI	GTCGAC	1 cut(s)	749
SaqAI	TTAA	3 cut(s)	506, 588, 663
SatI	GCNGC	1 cut(s)	693
Sau3AI	GATC	2 cut(s)	28, 78
Sau96I	GGNCC	2 cut(s)	467, 690
ScaI	AGTACT	1 cut(s)	511
SetI	ASST	4 cut(s)	177, 228, 526, 747
SfaNI	GCATC	3 cut(s)	328, 744, 779
SinI	GGWCC	1 cut(s)	467
SmiMI	CAYNNNNRTG	1 cut(s)	475
SmlI	CTYRAG	1 cut(s)	71
SmoI	CTYRAG	1 cut(s)	71
Sse9I	AATT	6 cut(s)	24, 317, 409, 420, 590, 709
SsiI	CCGC	2 cut(s)	606, 693
SspMI	CTAG	4 cut(s)	83, 96, 272, 290
TaaI	ACNGT	1 cut(s)	66
TaqI	TCGA	2 cut(s)	741, 750
TasI	AATT	6 cut(s)	24, 317, 409, 420, 590, 709
TatI	WGTACW	2 cut(s)	163, 509
TauI	GCSGC	1 cut(s)	695
Tru1I	TTAA	3 cut(s)	506, 588, 663
Tru9I	TTAA	3 cut(s)	506, 588, 663
TscAI	CASTG	2 cut(s)	69, 774
TseFI	GTSAC	1 cut(s)	205
Tsp45I	GTSAC	1 cut(s)	205
TspDTI	ATGAA	7 cut(s)	48, 156, 375, 414, 531, 545, 574
TspRI	CASTG	2 cut(s)	69, 774
VpaK11BI	GGWCC	1 cut(s)	467
XapI	RAATTY	2 cut(s)	317, 420
XbaI	TCTAGA	2 cut(s)	95, 271
XceI	RCATGY	2 cut(s)	216, 784
XmiI	GTMKAC	1 cut(s)	750
XmnI	GAANNNNTTC	1 cut(s)	125
XspI	CTAG	4 cut(s)	83, 96, 272, 290
ZrmI	AGTACT	1 cut(s)	511

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.