Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000156

Physical Location & Seq

Genomic Coordinates Reverse (-)

14980199 .. 14981076

Gene Structure 878 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ47779

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGAGACCTAGTTCCAGAACTCAAAAATTCACTGAAGGAGGACCTGAGGTTCCTAGGAAGATGCCTGGTCCTGTTATGGCAAGTTATGGAAAATACATAGCTCTTCAGAGAGCTAATGGTTTCAAATCTGCAAACCCTGATTTCAGGATTTCATTACATTCCTCGTATATCACTGGACATTATTTGTATTTGCCAGCCAAGTTTGCCAATAGATATCTTGTTAAGCAGCCTAGACATGCCATCCTTCGGGTTGCAAGTAAAAGAACTTGGTCTGTCAACTTACGTTATACTGCAGCAAGAACCACATTCCAAACTGGTTGGTTTGAATTTGTGCAAGATAATGATTTGAAAGAGGGTGGTGCTTGTATTTTCATGTTGACCGACAACATCCAGGTTGTATTTGATGTTGTCTTTTTCCGAGCCACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

142

Amino Acids

16.26

Weight (kDa)

10.16

Isoelectric Point (pI)

46.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	50 - 129	4.2e-16	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000156)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49475 AT3G18960 AT3G18960 AT3G18960 AT4G01580
fragaria_vesca	FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14670 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14690 FvH4_1g14700 FvH4_1g29250 FvH4_6g29400 FvH4_6g38681 FvH4_6g38690 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_7g02010
malus_domestica	MD00G1020600.v1.1 MD00G1022000.v1.1 MD00G1022100.v1.1 MD02G1159700.v1.1 MD02G1159800.v1.1 MD02G1159900.v1.1 MD02G1160000.v1.1 MD02G1160300.v1.1 MD15G1274100.v1.1 MD15G1274200.v1.1 MD15G1274400.v1.1 MD15G1302000.v1.1
prunus_persica	Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.3G083400_v2.0.a1 Prupe.6G229600_v2.0.a1 Prupe.7G039600_v2.0.a1 Prupe.7G044500_v2.0.a1 Prupe.7G044800_v2.0.a1 Prupe.7G143100_v2.0.a1 Prupe.7G143500_v2.0.a1 Prupe.7G143600_v2.0.a1 Prupe.7G143700_v2.0.a1 Prupe.7G143800_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.8G072800_v2.0.a1 Prupe.8G072800_v2.0.a1
pyrus_communis	pycom02g12620 pycom02g12630 pycom15g23750 pycom15g26490 pycom17g21160
rosa_chinensis	RchiOBHm_Chr2g0103421 RchiOBHm_Chr2g0103431 RchiOBHm_Chr2g0103441 RchiOBHm_Chr2g0103491 RchiOBHm_Chr2g0103501 RchiOBHm_Chr2g0103521 RchiOBHm_Chr2g0103541 RchiOBHm_Chr2g0103551 RchiOBHm_Chr2g0103561 RchiOBHm_Chr2g0134821 RchiOBHm_Chr2g0152161 RchiOBHm_Chr2g0152181 RchiOBHm_Chr7g0227261 RchiOBHm_Chr7g0227351 RchiOBHm_Chr7g0227431
rosa_laevigata	RLG00000001649 RLG00000001653 RLG00000001659 RLG00000017235 RLG00000017236 RLG00000017240 RLG00000017241 RLG00000017242 RLG00000017243 RLG00000017244 RLG00000017349 RLG00000019424 RLG00000020614 RLG00000020615
rosa_multiflora	Rmu_co8247875.1_g000001 Rmu_co8429551.1_g000001 Rmu_sc0000173.1_g000009 Rmu_sc0000718.1_g000004 Rmu_sc0001530.1_g000001 Rmu_sc0001530.1_g000002 Rmu_sc0001530.1_g000004 Rmu_sc0001530.1_g000005 Rmu_sc0001852.1_g000023 Rmu_sc0001852.1_g000024 Rmu_sc0002434.1_g000001 Rmu_sc0002434.1_g000002 Rmu_sc0003043.1_g000016 Rmu_sc0003153.1_g000005 Rmu_sc0011039.1_g000001 Rmu_sc0031822.1_g000001
rosa_roxburghii	Rroxscaffold_2G00095860 Rroxscaffold_2G00095870 Rroxscaffold_2G00109720 Rroxscaffold_2G00139530 Rroxscaffold_2G00139550 Rroxscaffold_2G00139570 Rroxscaffold_2G00139580 Rroxscaffold_2G00139630 Rroxscaffold_2G00139640 Rroxscaffold_4G00328430 Rroxscaffold_4G00328440 Rroxscaffold_4G00328450
rosa_rugosa	Rorug02G0114900 Rorug02G0115000 Rorug02G0115000 Rorug02G0115200 Rorug02G0115300 Rorug02G0115400 Rorug02G0115500 Rorug02G0115600 Rorug02G0115600 Rorug02G0115600 Rorug02G0115700 Rorug02G0320300 Rorug02G0431300 Rorug02G0431300 Rorug06G0028200 Rorug07G0241300
rosa_samantha	Rh2AG163200 Rh2AG163300 Rh2AG163700 Rh2AG163800 Rh2AG163900 Rh2AG164000 Rh2AG373400 Rh2AG492600 Rh2BG170300 Rh2BG170400 Rh2BG170800 Rh2BG170900 Rh2BG171000 Rh2BG171100 Rh2BG171200 Rh2BG377800 Rh2BG505000 Rh2BG505100 Rh2BG505200 Rh2CG170300 Rh2CG170700 Rh2CG479000 Rh2DG169100 Rh2DG169200 Rh2DG169300 Rh2DG516400 Rh7AG391200 Rh7BG376200 Rh7CG410200 Rh7CG411500 Rh7CG412000 Rh7CG412700 Rh7DG388800
rosa_wichuraiana	Rw2G012830 Rw2G012840 Rw2G012870 Rw2G012880 Rw2G012890 Rw2G012900 Rw2G030310 Rw2G040470 Rw2G040480 Rw7G032720 Rw7G032730 Rw7G032750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	26, 326
AcuI	CTGAAG	2 cut(s)	54, 89
AfiI	CCNNNNNNNGG	1 cut(s)	246
AgsI	TTSAA	3 cut(s)	124, 326, 349
AjnI	CCWGG	2 cut(s)	64, 390
AloI	GAACNNNNNNTCC	2 cut(s)	33, 65
AluBI	AGCT	2 cut(s)	101, 113
AluI	AGCT	2 cut(s)	101, 113
ApeKI	GCWGC	2 cut(s)	226, 293
ApoI	RAATTY	2 cut(s)	26, 326
AspA2I	CCTAGG	1 cut(s)	53
AspS9I	GGNCC	2 cut(s)	41, 68
AvaII	GGWCC	2 cut(s)	41, 68
AvrII	CCTAGG	1 cut(s)	53
AxyI	CCTNAGG	1 cut(s)	45
BbvI	GCAGC	2 cut(s)	238, 305
BccI	CCATC	1 cut(s)	248
BciT130I	CCWGG	2 cut(s)	66, 392
BfaI	CTAG	3 cut(s)	9, 54, 231
BfmI	CTRYAG	1 cut(s)	291
BisI	GCNGC	2 cut(s)	227, 294
BlnI	CCTAGG	1 cut(s)	53
BlsI	GCNGC	2 cut(s)	228, 295
Bme1390I	CCNGG	2 cut(s)	66, 392
Bme18I	GGWCC	2 cut(s)	41, 68
BmgT120I	GGNCC	2 cut(s)	41, 68
BmiI	GGNNCC	1 cut(s)	51
BmrFI	CCNGG	2 cut(s)	66, 392
BmsI	GCATC	1 cut(s)	51
BsaJI	CCNNGG	1 cut(s)	53
Bsc4I	CCNNNNNNNGG	1 cut(s)	246
Bse1I	ACTGG	2 cut(s)	178, 319
Bse21I	CCTNAGG	1 cut(s)	45
BseBI	CCWGG	2 cut(s)	66, 392
BseDI	CCNNGG	1 cut(s)	53
BseGI	GGATG	2 cut(s)	240, 387
BseLI	CCNNNNNNNGG	1 cut(s)	246
BseMII	CTCAG	1 cut(s)	36
BseNI	ACTGG	2 cut(s)	178, 319
BseXI	GCAGC	2 cut(s)	238, 305
BslI	CCNNNNNNNGG	1 cut(s)	246
BspCNI	CTCAG	1 cut(s)	37
BspLI	GGNNCC	1 cut(s)	51
BspMAI	CTGCAG	1 cut(s)	295
BspQI	GCTCTTC	1 cut(s)	108
BsrI	ACTGG	2 cut(s)	178, 319
BssECI	CCNNGG	1 cut(s)	53
BssT1I	CCWWGG	1 cut(s)	53
Bst2UI	CCWGG	2 cut(s)	66, 392
Bst6I	CTCTTC	1 cut(s)	108
BstC8I	GCNNGC	1 cut(s)	195
BstDEI	CTNAG	1 cut(s)	45
BstF5I	GGATG	2 cut(s)	240, 387
BstMWI	GCNNNNNNNGC	1 cut(s)	203
BstNI	CCWGG	2 cut(s)	66, 392
BstNSI	RCATGY	1 cut(s)	239
BstSCI	CCNGG	2 cut(s)	64, 390
BstSFI	CTRYAG	1 cut(s)	291
BstV1I	GCAGC	2 cut(s)	238, 305
Bsu36I	CCTNAGG	1 cut(s)	45
BtsCI	GGATG	2 cut(s)	240, 387
BtsIMutI	CAGTG	2 cut(s)	30, 171
Cac8I	GCNNGC	1 cut(s)	195
Cfr13I	GGNCC	2 cut(s)	41, 68
CviAII	CATG	2 cut(s)	236, 373
CviJI	RGCY	5 cut(s)	101, 113, 197, 229, 422
CviKI_1	RGCY	5 cut(s)	101, 113, 197, 229, 422
DdeI	CTNAG	1 cut(s)	45
Eam1104I	CTCTTC	1 cut(s)	108
EarI	CTCTTC	1 cut(s)	108
Eco130I	CCWWGG	1 cut(s)	53
Eco32I	GATATC	1 cut(s)	215
Eco47I	GGWCC	2 cut(s)	41, 68
Eco57I	CTGAAG	2 cut(s)	54, 89
Eco81I	CCTNAGG	1 cut(s)	45
EcoO109I	RGGNCCY	1 cut(s)	41
EcoRII	CCWGG	2 cut(s)	64, 390
EcoRV	GATATC	1 cut(s)	215
EcoT14I	CCWWGG	1 cut(s)	53
ErhI	CCWWGG	1 cut(s)	53
FaeI	CATG	2 cut(s)	239, 376
FaiI	YATR	8 cut(s)	77, 87, 98, 168, 237, 288, 374, 427
FatI	CATG	2 cut(s)	235, 372
Fnu4HI	GCNGC	2 cut(s)	227, 294
FokI	GGATG	2 cut(s)	227, 374
Fsp4HI	GCNGC	2 cut(s)	227, 294
FspBI	CTAG	3 cut(s)	9, 54, 231
GluI	GCNGC	2 cut(s)	227, 294
Hin1II	CATG	2 cut(s)	239, 376
HincII	GTYRAC	2 cut(s)	277, 378
HindII	GTYRAC	2 cut(s)	277, 378
Hpy166II	GTNNAC	2 cut(s)	277, 378
Hpy188I	TCNGA	2 cut(s)	108, 419
Hpy188III	TCNNGA	2 cut(s)	15, 145
Hpy8I	GTNNAC	2 cut(s)	277, 378
HpyAV	CCTTC	2 cut(s)	29, 254
HpyCH4IV	ACGT	1 cut(s)	283
HpyCH4V	TGCA	4 cut(s)	131, 254, 293, 334
HpyF10VI	GCNNNNNNNGC	1 cut(s)	203
HpyF3I	CTNAG	1 cut(s)	45
HpySE526I	ACGT	1 cut(s)	283
Hsp92II	CATG	2 cut(s)	239, 376
LguI	GCTCTTC	1 cut(s)	108
Lsp1109I	GCAGC	2 cut(s)	238, 305
LweI	GCATC	1 cut(s)	51
MaeI	CTAG	3 cut(s)	9, 54, 231
MaeII	ACGT	1 cut(s)	283
MboII	GAAGA	2 cut(s)	70, 95
MluCI	AATT	2 cut(s)	26, 326
MnlI	CCTC	4 cut(s)	32, 40, 172, 346
MseI	TTAA	1 cut(s)	222
MspR9I	CCNGG	2 cut(s)	66, 392
MvaI	CCWGG	2 cut(s)	66, 392
MwoI	GCNNNNNNNGC	1 cut(s)	203
NlaIII	CATG	2 cut(s)	239, 376
NlaIV	GGNNCC	1 cut(s)	51
NspI	RCATGY	1 cut(s)	239
PciSI	GCTCTTC	1 cut(s)	108
PkrI	GCNGC	2 cut(s)	228, 295
PpuMI	RGGWCCY	1 cut(s)	41
Psp5II	RGGWCCY	1 cut(s)	41
Psp6I	CCWGG	2 cut(s)	64, 390
PspGI	CCWGG	2 cut(s)	64, 390
PspN4I	GGNNCC	1 cut(s)	51
PspPI	GGNCC	2 cut(s)	41, 68
PspPPI	RGGWCCY	1 cut(s)	41
PstI	CTGCAG	1 cut(s)	295
SapI	GCTCTTC	1 cut(s)	108
SaqAI	TTAA	1 cut(s)	222
SatI	GCNGC	2 cut(s)	227, 294
Sau96I	GGNCC	2 cut(s)	41, 68
ScrFI	CCNGG	2 cut(s)	66, 392
SetI	ASST	7 cut(s)	10, 46, 51, 103, 115, 286, 396
SfaNI	GCATC	1 cut(s)	51
SfcI	CTRYAG	1 cut(s)	291
SinI	GGWCC	2 cut(s)	41, 68
Sse9I	AATT	2 cut(s)	26, 326
SspMI	CTAG	3 cut(s)	9, 54, 231
StyD4I	CCNGG	2 cut(s)	64, 390
StyI	CCWWGG	1 cut(s)	53
TaiI	ACGT	1 cut(s)	286
TaqII	GACCGA	1 cut(s)	395
TasI	AATT	2 cut(s)	26, 326
Tru1I	TTAA	1 cut(s)	222
Tru9I	TTAA	1 cut(s)	222
TscAI	CASTG	2 cut(s)	37, 178
TseI	GCWGC	2 cut(s)	226, 293
TspDTI	ATGAA	2 cut(s)	141, 361
TspRI	CASTG	2 cut(s)	37, 178
VpaK11BI	GGWCC	2 cut(s)	41, 68
XapI	RAATTY	2 cut(s)	26, 326
XceI	RCATGY	1 cut(s)	239
XmaJI	CCTAGG	1 cut(s)	53
XspI	CTAG	3 cut(s)	9, 54, 231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.