B3 domain-containing
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 699, 796 |
| Acc36I | ACCTGC | 1 cut(s) | 516 |
| AccIII | TCCGGA | 1 cut(s) | 340 |
| AciI | CCGC | 1 cut(s) | 659 |
| AclI | AACGTT | 1 cut(s) | 1164 |
| AcoI | YGGCCR | 2 cut(s) | 143, 467 |
| AcsI | RAATTY | 5 cut(s) | 379, 946, 957, 1547, 1618 |
| AcuI | CTGAAG | 1 cut(s) | 1346 |
| AfaI | GTAC | 3 cut(s) | 437, 742, 1418 |
| AflIII | ACRYGT | 1 cut(s) | 56 |
| AgsI | TTSAA | 7 cut(s) | 608, 641, 735, 996, 1189, 1538, 1618 |
| AjnI | CCWGG | 3 cut(s) | 493, 1230, 1353 |
| AluBI | AGCT | 8 cut(s) | 205, 233, 1213, 1496, 1523, 1594, 1665, 1693 |
| AluI | AGCT | 8 cut(s) | 205, 233, 1213, 1496, 1523, 1594, 1665, 1693 |
| Alw21I | GWGCWC | 3 cut(s) | 168, 1281, 1732 |
| Alw26I | GTCTC | 4 cut(s) | 169, 315, 782, 1579 |
| Ama87I | CYCGRG | 1 cut(s) | 1725 |
| Aor13HI | TCCGGA | 1 cut(s) | 340 |
| AoxI | GGCC | 7 cut(s) | 143, 467, 974, 1135, 1372, 1460, 1472 |
| ApoI | RAATTY | 5 cut(s) | 379, 946, 957, 1547, 1618 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 989, 1021 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 730, 856 |
| AspS9I | GGNCC | 5 cut(s) | 798, 1173, 1351, 1372, 1460 |
| AsuC2I | CCSGG | 1 cut(s) | 242 |
| AsuHPI | GGTGA | 3 cut(s) | 455, 1095, 1138 |
| AvaI | CYCGRG | 1 cut(s) | 1725 |
| AvaII | GGWCC | 3 cut(s) | 798, 1173, 1351 |
| BaeGI | GKGCMC | 1 cut(s) | 45 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 427, 460, 1281, 1314 |
| BalI | TGGCCA | 2 cut(s) | 145, 469 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1497, 1529 |
| Bbv12I | GWGCWC | 3 cut(s) | 168, 1281, 1732 |
| BccI | CCATC | 3 cut(s) | 907, 1078, 1136 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1706, 1740 |
| BciT130I | CCWGG | 3 cut(s) | 495, 1232, 1355 |
| BciVI | GTATCC | 2 cut(s) | 594, 1646 |
| BclI | TGATCA | 1 cut(s) | 1684 |
| BcnI | CCSGG | 1 cut(s) | 242 |
| BcoDI | GTCTC | 4 cut(s) | 169, 315, 782, 1579 |
| BfaI | CTAG | 4 cut(s) | 305, 318, 537, 861 |
| BfmI | CTRYAG | 2 cut(s) | 1284, 1518 |
| BfuAI | ACCTGC | 1 cut(s) | 516 |
| BfuI | GTATCC | 2 cut(s) | 594, 1646 |
| BglII | AGATCT | 1 cut(s) | 370 |
| BlpI | GCTNAGC | 1 cut(s) | 1524 |
| Bme1390I | CCNGG | 4 cut(s) | 242, 495, 1232, 1355 |
| Bme18I | GGWCC | 3 cut(s) | 798, 1173, 1351 |
| BmeT110I | CYCGRG | 1 cut(s) | 1725 |
| BmgT120I | GGNCC | 5 cut(s) | 798, 1173, 1351, 1372, 1460 |
| BmiI | GGNNCC | 3 cut(s) | 799, 1032, 1229 |
| BmrFI | CCNGG | 4 cut(s) | 242, 495, 1232, 1355 |
| BmrI | ACTGGG | 5 cut(s) | 48, 341, 827, 1233, 1467 |
| BmsI | GCATC | 4 cut(s) | 695, 1152, 1234, 1592 |
| BmuI | ACTGGG | 5 cut(s) | 48, 341, 827, 1233, 1467 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 166, 198 |
| BpmI | CTGGAG | 2 cut(s) | 963, 1193 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1113, 1139 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1524 |
| BpuEI | CTTGAG | 1 cut(s) | 313 |
| BpuMI | CCSGG | 1 cut(s) | 242 |
| BsaJI | CCNNGG | 3 cut(s) | 1132, 1395, 1529 |
| BsaWI | WCCGGW | 2 cut(s) | 340, 1195 |
| Bse1I | ACTGG | 9 cut(s) | 43, 226, 336, 833, 980, 1228, 1344, 1430, 1462 |
| Bse3DI | GCAATG | 1 cut(s) | 257 |
| BseAI | TCCGGA | 1 cut(s) | 340 |
| BseBI | CCWGG | 3 cut(s) | 495, 1232, 1355 |
| BseDI | CCNNGG | 3 cut(s) | 1132, 1395, 1529 |
| BseGI | GGATG | 5 cut(s) | 899, 1046, 1128, 1583, 1738 |
| BseMI | GCAATG | 1 cut(s) | 257 |
| BseMII | CTCAG | 6 cut(s) | 96, 164, 772, 1460, 1515, 1590 |
| BseNI | ACTGG | 9 cut(s) | 43, 226, 336, 833, 980, 1228, 1344, 1430, 1462 |
| BseSI | GKGCMC | 1 cut(s) | 45 |
| BshFI | GGCC | 7 cut(s) | 145, 469, 976, 1137, 1374, 1462, 1474 |
| BsiHKAI | GWGCWC | 3 cut(s) | 168, 1281, 1732 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1725 |
| BsiSI | CCGG | 4 cut(s) | 242, 341, 1196, 1375 |
| BslFI | GGGAC | 1 cut(s) | 1414 |
| BsmAI | GTCTC | 4 cut(s) | 169, 315, 782, 1579 |
| BsmFI | GGGAC | 1 cut(s) | 1414 |
| BsnI | GGCC | 7 cut(s) | 145, 469, 976, 1137, 1374, 1462, 1474 |
| BsoBI | CYCGRG | 1 cut(s) | 1725 |
| Bsp1286I | GDGCHC | 4 cut(s) | 45, 168, 1281, 1732 |
| Bsp13I | TCCGGA | 1 cut(s) | 340 |
| Bsp143I | GATC | 3 cut(s) | 370, 576, 1684 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1524 |
| Bsp19I | CCATGG | 2 cut(s) | 1132, 1395 |
| BspACI | CCGC | 1 cut(s) | 659 |
| BspANI | GGCC | 7 cut(s) | 145, 469, 976, 1137, 1374, 1462, 1474 |
| BspCNI | CTCAG | 6 cut(s) | 97, 165, 771, 1461, 1516, 1589 |
| BspEI | TCCGGA | 1 cut(s) | 340 |
| BspLI | GGNNCC | 3 cut(s) | 799, 1032, 1229 |
| BspMI | ACCTGC | 1 cut(s) | 516 |
| BsrDI | GCAATG | 1 cut(s) | 257 |
| BsrI | ACTGG | 9 cut(s) | 43, 226, 336, 833, 980, 1228, 1344, 1430, 1462 |
| BssECI | CCNNGG | 3 cut(s) | 1132, 1395, 1529 |
| BssMI | GATC | 3 cut(s) | 370, 576, 1684 |
| BssT1I | CCWWGG | 2 cut(s) | 1132, 1395 |
| Bst2UI | CCWGG | 3 cut(s) | 495, 1232, 1355 |
| Bst4CI | ACNGT | 6 cut(s) | 20, 730, 1182, 1294, 1339, 1565 |
| BstC8I | GCNNGC | 1 cut(s) | 1592 |
| BstDSI | CCRYGG | 2 cut(s) | 1132, 1395 |
| BstF5I | GGATG | 5 cut(s) | 899, 1046, 1128, 1583, 1738 |
| BstKTI | GATC | 3 cut(s) | 373, 579, 1687 |
| BstMAI | GTCTC | 4 cut(s) | 169, 315, 782, 1579 |
| BstMBI | GATC | 3 cut(s) | 370, 576, 1684 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 683, 861, 973 |
| BstNI | CCWGG | 3 cut(s) | 495, 1232, 1355 |
| BstNSI | RCATGY | 4 cut(s) | 60, 136, 1319, 1717 |
| BstSCI | CCNGG | 4 cut(s) | 240, 493, 1230, 1353 |
| BstSFI | CTRYAG | 2 cut(s) | 1284, 1518 |
| BstSLI | GKGCMC | 1 cut(s) | 45 |
| BstX2I | RGATCY | 1 cut(s) | 370 |
| BstYI | RGATCY | 1 cut(s) | 370 |
| BsuI | GTATCC | 2 cut(s) | 594, 1646 |
| BsuRI | GGCC | 7 cut(s) | 145, 469, 976, 1137, 1374, 1462, 1474 |
| BtgI | CCRYGG | 2 cut(s) | 1132, 1395 |
| BtsCI | GGATG | 5 cut(s) | 899, 1046, 1128, 1583, 1738 |
| BtsIMutI | CAGTG | 7 cut(s) | 102, 840, 1178, 1351, 1370, 1437, 1466 |
| BveI | ACCTGC | 1 cut(s) | 516 |
| Cac8I | GCNNGC | 1 cut(s) | 1592 |
| Cfr13I | GGNCC | 5 cut(s) | 798, 1173, 1351, 1372, 1460 |
| CsiI | ACCWGGT | 2 cut(s) | 1230, 1353 |
| Csp6I | GTAC | 3 cut(s) | 436, 741, 1417 |
| CviQI | GTAC | 3 cut(s) | 436, 741, 1417 |
| DpnI | GATC | 3 cut(s) | 372, 578, 1686 |
| DpnII | GATC | 3 cut(s) | 370, 576, 1684 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 699, 796 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 699, 796 |
| EaeI | YGGCCR | 2 cut(s) | 143, 467 |
| Eco130I | CCWWGG | 2 cut(s) | 1132, 1395 |
| Eco47I | GGWCC | 3 cut(s) | 798, 1173, 1351 |
| Eco57I | CTGAAG | 1 cut(s) | 1346 |
| Eco88I | CYCGRG | 1 cut(s) | 1725 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1351 |
| EcoRI | GAATTC | 4 cut(s) | 946, 957, 1547, 1618 |
| EcoRII | CCWGG | 3 cut(s) | 493, 1230, 1353 |
| EcoT14I | CCWWGG | 2 cut(s) | 1132, 1395 |
| EcoT22I | ATGCAT | 1 cut(s) | 1719 |
| ErhI | CCWWGG | 2 cut(s) | 1132, 1395 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 111, 143 |
| FaqI | GGGAC | 1 cut(s) | 1414 |
| FbaI | TGATCA | 1 cut(s) | 1684 |
| FokI | GGATG | 5 cut(s) | 886, 1033, 1115, 1570, 1725 |
| FspBI | CTAG | 4 cut(s) | 305, 318, 537, 861 |
| GsuI | CTGGAG | 2 cut(s) | 963, 1193 |
| HaeIII | GGCC | 7 cut(s) | 145, 469, 976, 1137, 1374, 1462, 1474 |
| HapII | CCGG | 4 cut(s) | 242, 341, 1196, 1375 |
| HindIII | AAGCTT | 1 cut(s) | 1663 |
| HinfI | GANTC | 6 cut(s) | 177, 337, 629, 873, 1154, 1258 |
| HpaII | CCGG | 4 cut(s) | 242, 341, 1196, 1375 |
| HphI | GGTGA | 3 cut(s) | 455, 1095, 1138 |
| Hpy166II | GTNNAC | 1 cut(s) | 1176 |
| Hpy188I | TCNGA | 5 cut(s) | 174, 412, 521, 1533, 1579 |
| Hpy8I | GTNNAC | 1 cut(s) | 1176 |
| HpyAV | CCTTC | 5 cut(s) | 454, 521, 1116, 1363, 1499 |
| HpyCH4III | ACNGT | 6 cut(s) | 20, 730, 1182, 1294, 1339, 1565 |
| HpyCH4IV | ACGT | 1 cut(s) | 1164 |
| HpyCH4V | TGCA | 6 cut(s) | 714, 746, 1247, 1315, 1555, 1717 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 683, 861, 973 |
| HpySE526I | ACGT | 1 cut(s) | 1164 |
| Kpn2I | TCCGGA | 1 cut(s) | 340 |
| Ksp22I | TGATCA | 1 cut(s) | 1684 |
| Kzo9I | GATC | 3 cut(s) | 370, 576, 1684 |
| LweI | GCATC | 4 cut(s) | 695, 1152, 1234, 1592 |
| MabI | ACCWGGT | 2 cut(s) | 1230, 1353 |
| MaeI | CTAG | 4 cut(s) | 305, 318, 537, 861 |
| MaeII | ACGT | 1 cut(s) | 1164 |
| MaeIII | GTNAC | 5 cut(s) | 385, 1005, 1198, 1255, 1339 |
| MalI | GATC | 3 cut(s) | 372, 578, 1686 |
| MboI | GATC | 3 cut(s) | 370, 576, 1684 |
| MboII | GAAGA | 2 cut(s) | 620, 822 |
| MfeI | CAATTG | 1 cut(s) | 570 |
| MflI | RGATCY | 1 cut(s) | 370 |
| MhlI | GDGCHC | 4 cut(s) | 45, 168, 1281, 1732 |
| MlsI | TGGCCA | 2 cut(s) | 145, 469 |
| MluNI | TGGCCA | 2 cut(s) | 145, 469 |
| MlyI | GAGTC | 3 cut(s) | 171, 1148, 1252 |
| MmeI | TCCRAC | 1 cut(s) | 1482 |
| Mox20I | TGGCCA | 2 cut(s) | 145, 469 |
| Mph1103I | ATGCAT | 1 cut(s) | 1719 |
| MroI | TCCGGA | 1 cut(s) | 340 |
| MroXI | GAANNNNTTC | 2 cut(s) | 730, 856 |
| MscI | TGGCCA | 2 cut(s) | 145, 469 |
| MseI | TTAA | 4 cut(s) | 96, 228, 327, 591 |
| Msp20I | TGGCCA | 2 cut(s) | 145, 469 |
| MspA1I | CMGCKG | 1 cut(s) | 661 |
| MspI | CCGG | 4 cut(s) | 242, 341, 1196, 1375 |
| MspR9I | CCNGG | 4 cut(s) | 242, 495, 1232, 1355 |
| MunI | CAATTG | 1 cut(s) | 570 |
| MvaI | CCWGG | 3 cut(s) | 495, 1232, 1355 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 683, 861, 973 |
| NciI | CCSGG | 1 cut(s) | 242 |
| NcoI | CCATGG | 2 cut(s) | 1132, 1395 |
| NdeII | GATC | 3 cut(s) | 370, 576, 1684 |
| NlaIV | GGNNCC | 3 cut(s) | 799, 1032, 1229 |
| NmuCI | GTSAC | 2 cut(s) | 1005, 1255 |
| NsiI | ATGCAT | 1 cut(s) | 1719 |
| NspI | RCATGY | 4 cut(s) | 60, 136, 1319, 1717 |
| PaeR7I | CTCGAG | 1 cut(s) | 1725 |
| PciI | ACATGT | 1 cut(s) | 56 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 585 |
| PdmI | GAANNNNTTC | 2 cut(s) | 730, 856 |
| PfeI | GAWTC | 3 cut(s) | 337, 629, 873 |
| PflFI | GACNNNGTC | 1 cut(s) | 1629 |
| PfoI | TCCNGGA | 1 cut(s) | 240 |
| PleI | GAGTC | 3 cut(s) | 171, 1148, 1252 |
| PpsI | GAGTC | 3 cut(s) | 171, 1148, 1252 |
| PpuMI | RGGWCCY | 1 cut(s) | 1351 |
| PscI | ACATGT | 1 cut(s) | 56 |
| Psp1406I | AACGTT | 1 cut(s) | 1164 |
| Psp5II | RGGWCCY | 1 cut(s) | 1351 |
| Psp6I | CCWGG | 3 cut(s) | 493, 1230, 1353 |
| PspGI | CCWGG | 3 cut(s) | 493, 1230, 1353 |
| PspN4I | GGNNCC | 3 cut(s) | 799, 1032, 1229 |
| PspPI | GGNCC | 5 cut(s) | 798, 1173, 1351, 1372, 1460 |
| PspPPI | RGGWCCY | 1 cut(s) | 1351 |
| PspXI | VCTCGAGB | 1 cut(s) | 1725 |
| PsuI | RGATCY | 1 cut(s) | 370 |
| PsyI | GACNNNGTC | 1 cut(s) | 1629 |
| RsaI | GTAC | 3 cut(s) | 437, 742, 1418 |
| RsaNI | GTAC | 3 cut(s) | 436, 741, 1417 |
| SaqAI | TTAA | 4 cut(s) | 96, 228, 327, 591 |
| Sau3AI | GATC | 3 cut(s) | 370, 576, 1684 |
| Sau96I | GGNCC | 5 cut(s) | 798, 1173, 1351, 1372, 1460 |
| SchI | GAGTC | 3 cut(s) | 171, 1148, 1252 |
| ScrFI | CCNGG | 4 cut(s) | 242, 495, 1232, 1355 |
| SduI | GDGCHC | 4 cut(s) | 45, 168, 1281, 1732 |
| SexAI | ACCWGGT | 2 cut(s) | 1230, 1353 |
| SfaNI | GCATC | 4 cut(s) | 695, 1152, 1234, 1592 |
| SfcI | CTRYAG | 2 cut(s) | 1284, 1518 |
| Sfr274I | CTCGAG | 1 cut(s) | 1725 |
| SinI | GGWCC | 3 cut(s) | 798, 1173, 1351 |
| SlaI | CTCGAG | 1 cut(s) | 1725 |
| SmlI | CTYRAG | 2 cut(s) | 292, 1725 |
| SmoI | CTYRAG | 2 cut(s) | 292, 1725 |
| SsiI | CCGC | 1 cut(s) | 659 |
| SspMI | CTAG | 4 cut(s) | 305, 318, 537, 861 |
| StyD4I | CCNGG | 4 cut(s) | 240, 493, 1230, 1353 |
| StyI | CCWWGG | 2 cut(s) | 1132, 1395 |
| TaaI | ACNGT | 6 cut(s) | 20, 730, 1182, 1294, 1339, 1565 |
| TaiI | ACGT | 1 cut(s) | 1167 |
| TaqI | TCGA | 5 cut(s) | 479, 579, 691, 944, 1726 |
| TfiI | GAWTC | 3 cut(s) | 337, 629, 873 |
| Tru1I | TTAA | 4 cut(s) | 96, 228, 327, 591 |
| Tru9I | TTAA | 4 cut(s) | 96, 228, 327, 591 |
| TscAI | CASTG | 7 cut(s) | 109, 840, 1185, 1351, 1370, 1437, 1473 |
| TseFI | GTSAC | 2 cut(s) | 1005, 1255 |
| Tsp45I | GTSAC | 2 cut(s) | 1005, 1255 |
| TspDTI | ATGAA | 9 cut(s) | 17, 132, 263, 540, 633, 731, 791, 939, 1463 |
| TspRI | CASTG | 7 cut(s) | 109, 840, 1185, 1351, 1370, 1437, 1473 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1629 |
| VpaK11BI | GGWCC | 3 cut(s) | 798, 1173, 1351 |
| XapI | RAATTY | 5 cut(s) | 379, 946, 957, 1547, 1618 |
| XbaI | TCTAGA | 3 cut(s) | 304, 317, 536 |
| XceI | RCATGY | 4 cut(s) | 60, 136, 1319, 1717 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1351 |
| XhoI | CTCGAG | 1 cut(s) | 1725 |
| XmnI | GAANNNNTTC | 2 cut(s) | 730, 856 |
| XspI | CTAG | 4 cut(s) | 305, 318, 537, 861 |
| Zsp2I | ATGCAT | 1 cut(s) | 1719 |