MD00G1022000.v1.1

B3 domain-containing

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
Physical Location & Seq
Reverse (-)
3800996 .. 3802245
1250 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1022000.v1.1.491

Sequence Viewer

Length: 1029 bp
ATGTGTGTGTTAGTTTTCAAACTGAAAATTAAGCTCAAACAAATTACAACGCAAATCCTCTCCAAATTACCTGATTCTCTTTCTTTTCAGTATTTGGGAGCCAAGTTTACCAAGGAACACTTTCTTAAGTGGAATTATCATCAAGTAATCCTTCGTGTTTCGGATGGAAGAACTTGGCCTGTCAAATTAAGCAAACGTCAGAAAAACATGGTCCGACTCCAGAATGGTTGGATTACATTTGTGCAAGACAATCATTTGGAAATTGGTGATGTGTGTGTATTTGCGTTGATTAACAACATCAAAGGTTTAATGGATGTTGTTATTTTCCGCACTACAGAAGCTGCACGTTGGAACCTGTCACAAGACGTTGATGGTGAAAAAACAATGTCCGAAACTGAAGAAACTGATGAAGATGATGGTTGTGTTGAAATCTTGGACGATTCTCCACCATGCCTGAAAACAAAGAAAAAATCACCAATTGCAACACAGCCTCACAAGAAAAACAGAGCAGGTTCCATTAGCACTTCAGAAAACCACATGAAGAAGTTTGGTGGCTCGTCTTGTACTAAAGAATTAGTAAAACGAAGACCTAATCAGGTTCCTAGGATGATGAATCCACTTACAGAAAGCGGAACAAATAGAGCTCTTCAGAGAGCAAGGGCTTTCAAATCTGAATACCCTTGTTGCATGGTTGTTATGCGTCCCTCGTATATCCAGGCAAATACTTTGAATTTGGAAGCTAAGTTTGCCCGGGAACATCTTCTAAACAGGACTCATGATAATGTGATTCTTCGTGTTTCGGGTGGAAGAACTTGGCCTGTCAAATTACACCAATATAGCAAAACTGTACTGAAATTCCAGAGTGGCTGGATGACATTTGTGCAAGACAATGGTCTGGAAATCGGTGATGTGTGTGTTTTCATGTTGATCAATAATACCGAACATTTAATTGATGTAGTCATTTTCCGCGGTAGAGAAACTGCTGATTGCACCTTTTCACCAGGTGAGCAAGTTTTCTGTTGGTTGTGA

Protein Analysis

343

Amino Acids

39.23

Weight (kDa)

9.22

Isoelectric Point (pI)

43.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 30 - 110 2.2e-15 B3 DNA binding domain
B3 PF02362 231 - 323 1e-16 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000156)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49475 AT3G18960 AT3G18960 AT3G18960 AT4G01580
fragaria_vesca FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14670 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14690 FvH4_1g14700 FvH4_1g29250 FvH4_6g29400 FvH4_6g38681 FvH4_6g38690 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_7g02010
malus_domestica MD00G1020600.v1.1 MD00G1022000.v1.1 MD00G1022100.v1.1 MD02G1159700.v1.1 MD02G1159800.v1.1 MD02G1159900.v1.1 MD02G1160000.v1.1 MD02G1160300.v1.1 MD15G1274100.v1.1 MD15G1274200.v1.1 MD15G1274400.v1.1 MD15G1302000.v1.1
prunus_persica Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.3G083400_v2.0.a1 Prupe.6G229600_v2.0.a1 Prupe.7G039600_v2.0.a1 Prupe.7G044500_v2.0.a1 Prupe.7G044800_v2.0.a1 Prupe.7G143100_v2.0.a1 Prupe.7G143500_v2.0.a1 Prupe.7G143600_v2.0.a1 Prupe.7G143700_v2.0.a1 Prupe.7G143800_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.8G072800_v2.0.a1 Prupe.8G072800_v2.0.a1
pyrus_communis pycom02g12620 pycom02g12630 pycom15g23750 pycom15g26490 pycom17g21160
rosa_chinensis RchiOBHm_Chr2g0103421 RchiOBHm_Chr2g0103431 RchiOBHm_Chr2g0103441 RchiOBHm_Chr2g0103491 RchiOBHm_Chr2g0103501 RchiOBHm_Chr2g0103521 RchiOBHm_Chr2g0103541 RchiOBHm_Chr2g0103551 RchiOBHm_Chr2g0103561 RchiOBHm_Chr2g0134821 RchiOBHm_Chr2g0152161 RchiOBHm_Chr2g0152181 RchiOBHm_Chr7g0227261 RchiOBHm_Chr7g0227351 RchiOBHm_Chr7g0227431
rosa_laevigata RLG00000001649 RLG00000001653 RLG00000001659 RLG00000017235 RLG00000017236 RLG00000017240 RLG00000017241 RLG00000017242 RLG00000017243 RLG00000017244 RLG00000017349 RLG00000019424 RLG00000020614 RLG00000020615
rosa_multiflora Rmu_co8247875.1_g000001 Rmu_co8429551.1_g000001 Rmu_sc0000173.1_g000009 Rmu_sc0000718.1_g000004 Rmu_sc0001530.1_g000001 Rmu_sc0001530.1_g000002 Rmu_sc0001530.1_g000004 Rmu_sc0001530.1_g000005 Rmu_sc0001852.1_g000023 Rmu_sc0001852.1_g000024 Rmu_sc0002434.1_g000001 Rmu_sc0002434.1_g000002 Rmu_sc0003043.1_g000016 Rmu_sc0003153.1_g000005 Rmu_sc0011039.1_g000001 Rmu_sc0031822.1_g000001
rosa_roxburghii Rroxscaffold_2G00095860 Rroxscaffold_2G00095870 Rroxscaffold_2G00109720 Rroxscaffold_2G00139530 Rroxscaffold_2G00139550 Rroxscaffold_2G00139570 Rroxscaffold_2G00139580 Rroxscaffold_2G00139630 Rroxscaffold_2G00139640 Rroxscaffold_4G00328430 Rroxscaffold_4G00328440 Rroxscaffold_4G00328450
rosa_rugosa Rorug02G0114900 Rorug02G0115000 Rorug02G0115000 Rorug02G0115200 Rorug02G0115300 Rorug02G0115400 Rorug02G0115500 Rorug02G0115600 Rorug02G0115600 Rorug02G0115600 Rorug02G0115700 Rorug02G0320300 Rorug02G0431300 Rorug02G0431300 Rorug06G0028200 Rorug07G0241300
rosa_samantha Rh2AG163200 Rh2AG163300 Rh2AG163700 Rh2AG163800 Rh2AG163900 Rh2AG164000 Rh2AG373400 Rh2AG492600 Rh2BG170300 Rh2BG170400 Rh2BG170800 Rh2BG170900 Rh2BG171000 Rh2BG171100 Rh2BG171200 Rh2BG377800 Rh2BG505000 Rh2BG505100 Rh2BG505200 Rh2CG170300 Rh2CG170700 Rh2CG479000 Rh2DG169100 Rh2DG169200 Rh2DG169300 Rh2DG516400 Rh7AG391200 Rh7BG376200 Rh7CG410200 Rh7CG411500 Rh7CG412000 Rh7CG412700 Rh7DG388800
rosa_wichuraiana Rw2G012830 Rw2G012840 Rw2G012870 Rw2G012880 Rw2G012890 Rw2G012900 Rw2G030310 Rw2G040470 Rw2G040480 Rw7G032720 Rw7G032730 Rw7G032750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 500
AccII CGCG 1 cut(s) 969
AciI CCGC 4 cut(s) 328, 630, 967, 969
AcsI RAATTY 2 cut(s) 730, 854
AcuI CTGAAG 3 cut(s) 417, 510, 632
AdeI CACNNNGTG 1 cut(s) 1004
AfaI GTAC 2 cut(s) 565, 849
AflII CTTAAG 1 cut(s) 125
AgsI TTSAA 4 cut(s) 19, 428, 667, 730
AjnI CCWGG 2 cut(s) 714, 1000
AluBI AGCT 4 cut(s) 34, 341, 644, 740
AluI AGCT 4 cut(s) 34, 341, 644, 740
Alw21I GWGCWC 1 cut(s) 646
AlwNI CAGNNNCTG 1 cut(s) 341
Ama87I CYCGRG 1 cut(s) 750
AoxI GGCC 2 cut(s) 176, 815
ApeKI GCWGC 1 cut(s) 341
ApoI RAATTY 2 cut(s) 730, 854
Asp700I GAANNNNTTC 2 cut(s) 120, 759
AspA2I CCTAGG 1 cut(s) 602
AspS9I GGNCC 1 cut(s) 211
AsuC2I CCSGG 2 cut(s) 751, 752
AsuHPI GGTGA 6 cut(s) 278, 386, 465, 917, 990, 1016
AvaI CYCGRG 1 cut(s) 750
AvaII GGWCC 1 cut(s) 211
AvrII CCTAGG 1 cut(s) 602
BanII GRGCYC 1 cut(s) 646
BbsI GAAGAC 1 cut(s) 592
Bbv12I GWGCWC 1 cut(s) 646
BbvI GCAGC 1 cut(s) 328
BccI CCATC 3 cut(s) 158, 365, 410
BciT130I CCWGG 2 cut(s) 716, 1002
BclI TGATCA 1 cut(s) 927
BcnI CCSGG 2 cut(s) 751, 752
BfaI CTAG 1 cut(s) 603
BfmI CTRYAG 1 cut(s) 333
BfrI CTTAAG 1 cut(s) 125
BfuAI ACCTGC 1 cut(s) 500
BisI GCNGC 1 cut(s) 342
BlnI CCTAGG 1 cut(s) 602
BlsI GCNGC 1 cut(s) 343
Bme1390I CCNGG 4 cut(s) 716, 751, 752, 1002
Bme18I GGWCC 1 cut(s) 211
BmeT110I CYCGRG 1 cut(s) 750
BmgT120I GGNCC 1 cut(s) 211
BmiI GGNNCC 4 cut(s) 100, 353, 514, 600
BmrFI CCNGG 4 cut(s) 716, 751, 752, 1002
BoxI GACNNNNGTC 1 cut(s) 891
BpiI GAAGAC 1 cut(s) 592
BpmI CTGGAG 1 cut(s) 203
BpuMI CCSGG 2 cut(s) 751, 752
BsaJI CCNNGG 4 cut(s) 111, 602, 750, 967
BseBI CCWGG 2 cut(s) 716, 1002
BseDI CCNNGG 4 cut(s) 111, 602, 750, 967
BseGI GGATG 4 cut(s) 169, 319, 612, 876
BseXI GCAGC 1 cut(s) 328
BsgI GTGCAG 1 cut(s) 327
Bsh1236I CGCG 1 cut(s) 969
BshFI GGCC 2 cut(s) 178, 817
BsiHKAI GWGCWC 1 cut(s) 646
BsiHKCI CYCGRG 1 cut(s) 750
BsiSI CCGG 1 cut(s) 751
BslFI GGGAC 1 cut(s) 687
BsmFI GGGAC 1 cut(s) 687
BsnI GGCC 2 cut(s) 178, 817
BsoBI CYCGRG 1 cut(s) 750
Bsp1286I GDGCHC 1 cut(s) 646
Bsp143I GATC 1 cut(s) 927
BspACI CCGC 4 cut(s) 328, 630, 967, 969
BspANI GGCC 2 cut(s) 178, 817
BspFNI CGCG 1 cut(s) 969
BspHI TCATGA 1 cut(s) 775
BspLI GGNNCC 4 cut(s) 100, 353, 514, 600
BspMI ACCTGC 1 cut(s) 500
BspQI GCTCTTC 1 cut(s) 651
BspTI CTTAAG 1 cut(s) 125
BssECI CCNNGG 4 cut(s) 111, 602, 750, 967
BssMI GATC 1 cut(s) 927
BssT1I CCWWGG 2 cut(s) 111, 602
Bst2UI CCWGG 2 cut(s) 716, 1002
Bst4CI ACNGT 1 cut(s) 847
Bst6I CTCTTC 1 cut(s) 651
BstAFI CTTAAG 1 cut(s) 125
BstDEI CTNAG 1 cut(s) 741
BstDSI CCRYGG 1 cut(s) 967
BstF5I GGATG 4 cut(s) 169, 319, 612, 876
BstFNI CGCG 1 cut(s) 969
BstKTI GATC 1 cut(s) 930
BstMBI GATC 1 cut(s) 927
BstMWI GCNNNNNNNGC 1 cut(s) 746
BstNI CCWGG 2 cut(s) 716, 1002
BstPAI GACNNNNGTC 1 cut(s) 891
BstSCI CCNGG 4 cut(s) 714, 749, 750, 1000
BstSFI CTRYAG 1 cut(s) 333
BstUI CGCG 1 cut(s) 969
BstV1I GCAGC 1 cut(s) 328
BstV2I GAAGAC 1 cut(s) 592
BsuRI GGCC 2 cut(s) 178, 817
BtgI CCRYGG 1 cut(s) 967
BtsCI GGATG 4 cut(s) 169, 319, 612, 876
BveI ACCTGC 1 cut(s) 500
CaiI CAGNNNCTG 1 cut(s) 341
CciI TCATGA 1 cut(s) 775
Cfr13I GGNCC 1 cut(s) 211
Cfr42I CCGCGG 1 cut(s) 970
Cfr9I CCCGGG 1 cut(s) 750
CseI GACGC 1 cut(s) 689
CsiI ACCWGGT 1 cut(s) 1000
Csp6I GTAC 2 cut(s) 564, 848
CviAII CATG 6 cut(s) 208, 450, 538, 688, 776, 922
CviQI GTAC 2 cut(s) 564, 848
DdeI CTNAG 1 cut(s) 741
DpnI GATC 1 cut(s) 929
DpnII GATC 1 cut(s) 927
DraIII CACNNNGTG 1 cut(s) 1004
Eam1104I CTCTTC 1 cut(s) 651
EarI CTCTTC 1 cut(s) 651
Ecl136II GAGCTC 1 cut(s) 644
Eco130I CCWWGG 2 cut(s) 111, 602
Eco24I GRGCYC 1 cut(s) 646
Eco47I GGWCC 1 cut(s) 211
Eco53kI GAGCTC 1 cut(s) 644
Eco57I CTGAAG 3 cut(s) 417, 510, 632
Eco88I CYCGRG 1 cut(s) 750
EcoICRI GAGCTC 1 cut(s) 644
EcoRII CCWGG 2 cut(s) 714, 1000
EcoT14I CCWWGG 2 cut(s) 111, 602
EcoT38I GRGCYC 1 cut(s) 646
ErhI CCWWGG 2 cut(s) 111, 602
FaeI CATG 6 cut(s) 211, 453, 541, 691, 779, 925
FaiI YATR 9 cut(s) 209, 451, 539, 689, 698, 711, 777, 837, 923
FalI AAGNNNNNCTT 4 cut(s) 104, 136, 135, 167
FaqI GGGAC 1 cut(s) 687
FatI CATG 6 cut(s) 207, 449, 537, 687, 775, 921
FbaI TGATCA 1 cut(s) 927
Fnu4HI GCNGC 1 cut(s) 342
FokI GGATG 4 cut(s) 176, 326, 619, 883
FriOI GRGCYC 1 cut(s) 646
Fsp4HI GCNGC 1 cut(s) 342
FspBI CTAG 1 cut(s) 603
GluI GCNGC 1 cut(s) 342
GsuI CTGGAG 1 cut(s) 203
HaeIII GGCC 2 cut(s) 178, 817
HapII CCGG 1 cut(s) 751
HgaI GACGC 1 cut(s) 689
Hin1II CATG 6 cut(s) 211, 453, 541, 691, 779, 925
HinfI GANTC 6 cut(s) 74, 216, 440, 613, 772, 787
HpaII CCGG 1 cut(s) 751
HphI GGTGA 6 cut(s) 278, 386, 465, 917, 990, 1016
Hpy166II GTNNAC 1 cut(s) 108
Hpy188I TCNGA 7 cut(s) 163, 201, 215, 391, 529, 651, 673
Hpy188III TCNNGA 4 cut(s) 220, 776, 859, 896
Hpy8I GTNNAC 1 cut(s) 108
HpyAV CCTTC 1 cut(s) 161
HpyCH4III ACNGT 1 cut(s) 847
HpyCH4IV ACGT 3 cut(s) 196, 346, 366
HpyCH4V TGCA 6 cut(s) 244, 344, 482, 687, 883, 990
HpyF10VI GCNNNNNNNGC 1 cut(s) 746
HpyF3I CTNAG 1 cut(s) 741
HpySE526I ACGT 3 cut(s) 196, 346, 366
Hsp92II CATG 6 cut(s) 211, 453, 541, 691, 779, 925
Ksp22I TGATCA 1 cut(s) 927
KspI CCGCGG 1 cut(s) 970
Kzo9I GATC 1 cut(s) 927
LguI GCTCTTC 1 cut(s) 651
LmnI GCTCC 1 cut(s) 98
Lsp1109I GCAGC 1 cut(s) 328
MabI ACCWGGT 1 cut(s) 1000
MaeI CTAG 1 cut(s) 603
MaeII ACGT 3 cut(s) 196, 346, 366
MaeIII GTNAC 1 cut(s) 357
MalI GATC 1 cut(s) 929
MboI GATC 1 cut(s) 927
MboII GAAGA 9 cut(s) 180, 410, 422, 553, 597, 638, 752, 782, 819
MfeI CAATTG 1 cut(s) 477
MhlI GDGCHC 1 cut(s) 646
MlyI GAGTC 2 cut(s) 210, 766
MmeI TCCRAC 3 cut(s) 209, 238, 329
MnlI CCTC 3 cut(s) 68, 501, 715
MroXI GAANNNNTTC 2 cut(s) 120, 759
MseI TTAA 6 cut(s) 30, 126, 188, 291, 308, 947
MslI CAYNNNNRTG 1 cut(s) 780
MspA1I CMGCKG 1 cut(s) 969
MspCI CTTAAG 1 cut(s) 125
MspI CCGG 1 cut(s) 751
MspR9I CCNGG 4 cut(s) 716, 751, 752, 1002
MunI CAATTG 1 cut(s) 477
MvaI CCWGG 2 cut(s) 716, 1002
MvnI CGCG 1 cut(s) 969
MwoI GCNNNNNNNGC 1 cut(s) 746
NciI CCSGG 2 cut(s) 751, 752
NdeII GATC 1 cut(s) 927
NlaIII CATG 6 cut(s) 211, 453, 541, 691, 779, 925
NlaIV GGNNCC 4 cut(s) 100, 353, 514, 600
NmuCI GTSAC 1 cut(s) 357
PagI TCATGA 1 cut(s) 775
PciSI GCTCTTC 1 cut(s) 651
PdmI GAANNNNTTC 2 cut(s) 120, 759
PfeI GAWTC 4 cut(s) 74, 440, 613, 787
PkrI GCNGC 1 cut(s) 343
PleI GAGTC 2 cut(s) 210, 766
PpsI GAGTC 2 cut(s) 210, 766
PshAI GACNNNNGTC 1 cut(s) 891
Psp124BI GAGCTC 1 cut(s) 646
Psp6I CCWGG 2 cut(s) 714, 1000
PspGI CCWGG 2 cut(s) 714, 1000
PspN4I GGNNCC 4 cut(s) 100, 353, 514, 600
PspPI GGNCC 1 cut(s) 211
PstNI CAGNNNCTG 1 cut(s) 341
RsaI GTAC 2 cut(s) 565, 849
RsaNI GTAC 2 cut(s) 564, 848
RseI CAYNNNNRTG 1 cut(s) 780
SacI GAGCTC 1 cut(s) 646
SacII CCGCGG 1 cut(s) 970
SapI GCTCTTC 1 cut(s) 651
SaqAI TTAA 6 cut(s) 30, 126, 188, 291, 308, 947
SatI GCNGC 1 cut(s) 342
Sau3AI GATC 1 cut(s) 927
Sau96I GGNCC 1 cut(s) 211
SchI GAGTC 2 cut(s) 210, 766
ScrFI CCNGG 4 cut(s) 716, 751, 752, 1002
SduI GDGCHC 1 cut(s) 646
SexAI ACCWGGT 1 cut(s) 1000
SfcI CTRYAG 1 cut(s) 333
Sfr303I CCGCGG 1 cut(s) 970
SgrBI CCGCGG 1 cut(s) 970
SinI GGWCC 1 cut(s) 211
SmaI CCCGGG 1 cut(s) 752
SmiMI CAYNNNNRTG 1 cut(s) 780
SmlI CTYRAG 1 cut(s) 125
SmoI CTYRAG 1 cut(s) 125
SsiI CCGC 4 cut(s) 328, 630, 967, 969
SspMI CTAG 1 cut(s) 603
SstI GAGCTC 1 cut(s) 646
StyD4I CCNGG 4 cut(s) 714, 749, 750, 1000
StyI CCWWGG 2 cut(s) 111, 602
TaaI ACNGT 1 cut(s) 847
TaiI ACGT 3 cut(s) 199, 349, 369
TatI WGTACW 2 cut(s) 563, 847
TfiI GAWTC 4 cut(s) 74, 440, 613, 787
Tru1I TTAA 6 cut(s) 30, 126, 188, 291, 308, 947
Tru9I TTAA 6 cut(s) 30, 126, 188, 291, 308, 947
TseFI GTSAC 1 cut(s) 357
TseI GCWGC 1 cut(s) 341
Tsp45I GTSAC 1 cut(s) 357
TspDTI ATGAA 4 cut(s) 423, 554, 626, 910
TspMI CCCGGG 1 cut(s) 750
Vha464I CTTAAG 1 cut(s) 125
VpaK11BI GGWCC 1 cut(s) 211
XapI RAATTY 2 cut(s) 730, 854
XmaI CCCGGG 1 cut(s) 750
XmaJI CCTAGG 1 cut(s) 602
XmnI GAANNNNTTC 2 cut(s) 120, 759
XspI CTAG 1 cut(s) 603
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.