Rroxscaffold_2G00109720

B3 domain-containing transcription factor VRN1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000156
Physical Location & Seq
Reverse (-)
33912519 .. 33923450
10932 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00109720.1

Sequence Viewer

Length: 1605 bp
ATGACTCTTGAAGAGAAAATTGGACAGAGAGCGCAAACTCCCGGTGCTATTATCATCGACGGTGGCTGCGGCTACGCAAGTTTGGTTGGAGTACGAGATGATTATCCGGTGGGCGGTCAACGACCTTTTTGGAATTTGGTAACATTGAGTCTCCTATGTACTCCGAGACTACGTCACTTTTTTTGCGATTACCGTGTCTTCGAGGATGAGATCCTCAAGATCAATGGCCTCGACGCCCTCATCATCATCAAGCTTTTTTTTGGTTGTTATGAGTTTAGGATACTGTCATGTTTTAACATTGCGCCCAAAGGCCGAAAACTATATAAGAGAATTCCAAAGAAATTTGTCATGAAATATGGAGAAGATGTATCAAATTCAGCTTTTCTCAAGCTTCCAAGCGGTTCTGAGTGGGAAGTGGAATTGACAAGGTGCAACGGTAAGGTTTGGTTTGAAAAGGGCTGGCCAGAGTTCTCTAAGTTCTGCTCTTTAGACTACGGTGACTTCCTAGTTTTTCGATATGAAGGGAATTCTATATTCCAAGTTTGCATATTTGATAGAACTGCCACAGAAATTGATTATCCCATAACAATGCCCGATATGGAAAAGACGGATCATGAAGATGAAGAAGATGATAATATATCTATTGAAATCTCGGAGGATTCTCCACCCCACCCGAAAACAAGGGAGAAATCTCCATTACCATGCCCTCCATCATTCAAAAAAATGAGAACAAGTTGGAGTGGTAAAGCAGCCGACACGATGTTTGGAAATGATGGCGGAGGCTCGTCTAGTGCACGAAGATACCGGAAGGGAACAGTTGAGGCTATTGGGGAGATGCATTCACTGAATAAAAGTGAAAAAGCTCAAGCTCTATGGAGAGCTGATGCTTTCATATCTGAAAACCCTCACTTCAAGGTCGTGTTGCAGCCTTCATATGTGCAACAAAGTTATTTGCGTTTTCCAGTGAAGTTTTTCAAGAGAAATGTAATTAAGGACGCTGGTAATGTCACCCTTCGGGTTTCAAATGGAAAAACTTGGTCTGTCAAGTTCAAATATGAAAAATCAAGCGCCAGACTCCAGCATGGTTGGCTTGCATTTGTAAAGGACAATTGTTTGAAAGTGGGTGATAGTGTACCAACTAGTTTTATCAGGCATTTCATAAAGCGACTGGAGAAACAAACAGTGATGCTTCAGGTTAAAAATAGATTGTGGCCTGTGAATTTGATTCCTTATGCTTATAGTAATCAACGACTATCAACCAAACTTTGTGGCGGTTGGATTGCATTTGCCAGGGAACATGATTTGAAAGGAGGTGATGTTTGTGTATTTGAGCTTATGGAGATGAAAGCCAATATTTTGGGGAAAAATGTATCTTCTCTGGCCCTGTATCTTAACAGAAAGAAACTTCCACTAGTTCATATGCAATGCATGAATTTATCTGGGTTCATGAGGTCAAAAGGGTTCTTCAGACTTGGTCTTTTGACAAGGCTGCAGCTCTTTAACAACTTAGATCAATGGAGTACTGTTTTGATAAAAGAAGAAATGCCAACAATATTTATACTAACAGATATTGGAGTCGTACAAGTTCCAAGAATTCATATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

534

Amino Acids

61.24

Weight (kDa)

9.2

Isoelectric Point (pI)

39.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 110 - 186 6.1e-14 B3 DNA binding domain
B3 PF02362 304 - 378 4.8e-14 B3 DNA binding domain
B3 PF02362 378 - 448 1.1e-09 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000156)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49475 AT3G18960 AT3G18960 AT3G18960 AT4G01580
fragaria_vesca FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14670 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14690 FvH4_1g14700 FvH4_1g29250 FvH4_6g29400 FvH4_6g38681 FvH4_6g38690 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_7g02010
malus_domestica MD00G1020600.v1.1 MD00G1022000.v1.1 MD00G1022100.v1.1 MD02G1159700.v1.1 MD02G1159800.v1.1 MD02G1159900.v1.1 MD02G1160000.v1.1 MD02G1160300.v1.1 MD15G1274100.v1.1 MD15G1274200.v1.1 MD15G1274400.v1.1 MD15G1302000.v1.1
prunus_persica Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.3G083400_v2.0.a1 Prupe.6G229600_v2.0.a1 Prupe.7G039600_v2.0.a1 Prupe.7G044500_v2.0.a1 Prupe.7G044800_v2.0.a1 Prupe.7G143100_v2.0.a1 Prupe.7G143500_v2.0.a1 Prupe.7G143600_v2.0.a1 Prupe.7G143700_v2.0.a1 Prupe.7G143800_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.8G072800_v2.0.a1 Prupe.8G072800_v2.0.a1
pyrus_communis pycom02g12620 pycom02g12630 pycom15g23750 pycom15g26490 pycom17g21160
rosa_chinensis RchiOBHm_Chr2g0103421 RchiOBHm_Chr2g0103431 RchiOBHm_Chr2g0103441 RchiOBHm_Chr2g0103491 RchiOBHm_Chr2g0103501 RchiOBHm_Chr2g0103521 RchiOBHm_Chr2g0103541 RchiOBHm_Chr2g0103551 RchiOBHm_Chr2g0103561 RchiOBHm_Chr2g0134821 RchiOBHm_Chr2g0152161 RchiOBHm_Chr2g0152181 RchiOBHm_Chr7g0227261 RchiOBHm_Chr7g0227351 RchiOBHm_Chr7g0227431
rosa_laevigata RLG00000001649 RLG00000001653 RLG00000001659 RLG00000017235 RLG00000017236 RLG00000017240 RLG00000017241 RLG00000017242 RLG00000017243 RLG00000017244 RLG00000017349 RLG00000019424 RLG00000020614 RLG00000020615
rosa_multiflora Rmu_co8247875.1_g000001 Rmu_co8429551.1_g000001 Rmu_sc0000173.1_g000009 Rmu_sc0000718.1_g000004 Rmu_sc0001530.1_g000001 Rmu_sc0001530.1_g000002 Rmu_sc0001530.1_g000004 Rmu_sc0001530.1_g000005 Rmu_sc0001852.1_g000023 Rmu_sc0001852.1_g000024 Rmu_sc0002434.1_g000001 Rmu_sc0002434.1_g000002 Rmu_sc0003043.1_g000016 Rmu_sc0003153.1_g000005 Rmu_sc0011039.1_g000001 Rmu_sc0031822.1_g000001
rosa_roxburghii Rroxscaffold_2G00095860 Rroxscaffold_2G00095870 Rroxscaffold_2G00109720 Rroxscaffold_2G00139530 Rroxscaffold_2G00139550 Rroxscaffold_2G00139570 Rroxscaffold_2G00139580 Rroxscaffold_2G00139630 Rroxscaffold_2G00139640 Rroxscaffold_4G00328430 Rroxscaffold_4G00328440 Rroxscaffold_4G00328450
rosa_rugosa Rorug02G0114900 Rorug02G0115000 Rorug02G0115000 Rorug02G0115200 Rorug02G0115300 Rorug02G0115400 Rorug02G0115500 Rorug02G0115600 Rorug02G0115600 Rorug02G0115600 Rorug02G0115700 Rorug02G0320300 Rorug02G0431300 Rorug02G0431300 Rorug06G0028200 Rorug07G0241300
rosa_samantha Rh2AG163200 Rh2AG163300 Rh2AG163700 Rh2AG163800 Rh2AG163900 Rh2AG164000 Rh2AG373400 Rh2AG492600 Rh2BG170300 Rh2BG170400 Rh2BG170800 Rh2BG170900 Rh2BG171000 Rh2BG171100 Rh2BG171200 Rh2BG377800 Rh2BG505000 Rh2BG505100 Rh2BG505200 Rh2CG170300 Rh2CG170700 Rh2CG479000 Rh2DG169100 Rh2DG169200 Rh2DG169300 Rh2DG516400 Rh7AG391200 Rh7BG376200 Rh7CG410200 Rh7CG411500 Rh7CG412000 Rh7CG412700 Rh7DG388800
rosa_wichuraiana Rw2G012830 Rw2G012840 Rw2G012870 Rw2G012880 Rw2G012890 Rw2G012900 Rw2G030310 Rw2G040470 Rw2G040480 Rw7G032720 Rw7G032730 Rw7G032750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 69, 114, 399, 777, 1272
AclWI GGATC 2 cut(s) 205, 618
AcoI YGGCCR 1 cut(s) 461
AcsI RAATTY 8 cut(s) 133, 330, 341, 373, 526, 1219, 1432, 1593
AcuI CTGAAG 2 cut(s) 1175, 1450
AcyI GRCGYC 1 cut(s) 234
AfaI GTAC 5 cut(s) 93, 160, 1134, 1522, 1581
AfiI CCNNNNNNNGG 1 cut(s) 113
AhlI ACTAGT 2 cut(s) 1139, 1411
AjnI CCWGG 1 cut(s) 1289
AjuI GAANNNNNNNTTGG 1 cut(s) 35
AluBI AGCT 8 cut(s) 253, 380, 391, 863, 869, 881, 1333, 1495
AluI AGCT 8 cut(s) 253, 380, 391, 863, 869, 881, 1333, 1495
Alw21I GWGCWC 1 cut(s) 796
Alw26I GTCTC 2 cut(s) 155, 160
Alw44I GTGCAC 1 cut(s) 792
AlwI GGATC 2 cut(s) 205, 618
AoxI GGCC 5 cut(s) 226, 310, 461, 1211, 1380
ApaLI GTGCAC 1 cut(s) 792
ApeKI GCWGC 5 cut(s) 66, 749, 925, 1489, 1492
ApoI RAATTY 8 cut(s) 133, 330, 341, 373, 526, 1219, 1432, 1593
ArsI GACNNNNNNTTYG 2 cut(s) 746, 778
Asp700I GAANNNNTTC 1 cut(s) 971
AspLEI GCGC 3 cut(s) 34, 304, 1070
AspS9I GGNCC 1 cut(s) 1381
AsuC2I CCSGG 1 cut(s) 42
AsuHPI GGTGA 4 cut(s) 509, 1000, 1136, 1325
BaeGI GKGCMC 1 cut(s) 796
BalI TGGCCA 1 cut(s) 463
BbsI GAAGAC 1 cut(s) 190
Bbv12I GWGCWC 1 cut(s) 796
BbvI GCAGC 5 cut(s) 53, 761, 937, 1476, 1504
BccI CCATC 2 cut(s) 718, 767
BciT130I CCWGG 1 cut(s) 1291
BciVI GTATCC 1 cut(s) 273
BcnI CCSGG 1 cut(s) 42
BcoDI GTCTC 2 cut(s) 155, 160
BcuI ACTAGT 2 cut(s) 1139, 1411
BfaI CTAG 4 cut(s) 506, 789, 1140, 1412
BfmI CTRYAG 1 cut(s) 1490
BfoI RGCGCY 1 cut(s) 1071
BfuI GTATCC 1 cut(s) 273
BisI GCNGC 6 cut(s) 67, 70, 750, 926, 1490, 1493
BlsI GCNGC 6 cut(s) 68, 71, 751, 927, 1491, 1494
BmcAI AGTACT 1 cut(s) 1522
Bme1390I CCNGG 2 cut(s) 42, 1291
BmgT120I GGNCC 1 cut(s) 1381
BmrFI CCNGG 2 cut(s) 42, 1291
BmsI GCATC 3 cut(s) 825, 874, 1176
BpiI GAAGAC 1 cut(s) 190
BpmI CTGGAG 2 cut(s) 1061, 1190
BpuEI CTTGAG 3 cut(s) 200, 371, 849
BpuMI CCSGG 1 cut(s) 42
BsaBI GATNNNNATC 1 cut(s) 102
BsaHI GRCGYC 1 cut(s) 234
BsaJI CCNNGG 1 cut(s) 1290
BsaWI WCCGGW 2 cut(s) 106, 804
BsaXI ACNNNNNCTCC 4 cut(s) 351, 381, 1302, 1332
Bsc4I CCNNNNNNNGG 1 cut(s) 113
Bse1I ACTGG 2 cut(s) 962, 1173
Bse3DI GCAATG 2 cut(s) 297, 1430
Bse8I GATNNNNATC 1 cut(s) 102
BseBI CCWGG 1 cut(s) 1291
BseDI CCNNGG 1 cut(s) 1290
BseGI GGATG 1 cut(s) 211
BseJI GATNNNNATC 1 cut(s) 102
BseLI CCNNNNNNNGG 1 cut(s) 113
BseMI GCAATG 2 cut(s) 297, 1430
BseMII CTCAG 1 cut(s) 396
BseNI ACTGG 2 cut(s) 962, 1173
BseSI GKGCMC 1 cut(s) 796
BseXI GCAGC 5 cut(s) 53, 761, 937, 1476, 1504
BshFI GGCC 5 cut(s) 228, 312, 463, 1213, 1382
BsiHKAI GWGCWC 1 cut(s) 796
BsiSI CCGG 3 cut(s) 42, 107, 805
BslI CCNNNNNNNGG 1 cut(s) 113
BsmAI GTCTC 2 cut(s) 155, 160
BsmI GAATGC 1 cut(s) 838
BsnI GGCC 5 cut(s) 228, 312, 463, 1213, 1382
Bsp1286I GDGCHC 1 cut(s) 796
Bsp143I GATC 4 cut(s) 210, 219, 610, 1510
BspACI CCGC 5 cut(s) 69, 114, 399, 777, 1272
BspANI GGCC 5 cut(s) 228, 312, 463, 1213, 1382
BspCNI CTCAG 1 cut(s) 397
BspHI TCATGA 3 cut(s) 348, 613, 1446
BspMAI CTGCAG 1 cut(s) 1494
BspPI GGATC 2 cut(s) 205, 618
BsrDI GCAATG 2 cut(s) 297, 1430
BsrI ACTGG 2 cut(s) 962, 1173
BssECI CCNNGG 1 cut(s) 1290
BssMI GATC 4 cut(s) 210, 219, 610, 1510
BssNI GRCGYC 1 cut(s) 234
Bst2UI CCWGG 1 cut(s) 1291
Bst4CI ACNGT 8 cut(s) 62, 194, 285, 437, 497, 817, 1183, 1525
Bst6I CTCTTC 1 cut(s) 6
BstACI GRCGYC 1 cut(s) 234
BstC8I GCNNGC 2 cut(s) 461, 1092
BstDEI CTNAG 3 cut(s) 405, 474, 1507
BstF5I GGATG 1 cut(s) 211
BstH2I RGCGCY 1 cut(s) 1071
BstHHI GCGC 3 cut(s) 34, 304, 1070
BstKTI GATC 4 cut(s) 213, 222, 613, 1513
BstMAI GTCTC 2 cut(s) 155, 160
BstMBI GATC 4 cut(s) 210, 219, 610, 1510
BstMWI GCNNNNNNNGC 1 cut(s) 1087
BstNI CCWGG 1 cut(s) 1291
BstSCI CCNGG 2 cut(s) 40, 1289
BstSFI CTRYAG 1 cut(s) 1490
BstSLI GKGCMC 1 cut(s) 796
BstV1I GCAGC 5 cut(s) 53, 761, 937, 1476, 1504
BstV2I GAAGAC 1 cut(s) 190
BstX2I RGATCY 1 cut(s) 210
BstXI CCANNNNNNTGG 1 cut(s) 1357
BstYI RGATCY 1 cut(s) 210
BsuI GTATCC 1 cut(s) 273
BsuRI GGCC 5 cut(s) 228, 312, 463, 1213, 1382
BtsCI GGATG 1 cut(s) 211
BtsIMutI CAGTG 3 cut(s) 842, 969, 1188
Cac8I GCNNGC 2 cut(s) 461, 1092
CciI TCATGA 3 cut(s) 348, 613, 1446
CfoI GCGC 3 cut(s) 34, 304, 1070
Cfr13I GGNCC 1 cut(s) 1381
CseI GACGC 2 cut(s) 242, 1004
Csp6I GTAC 5 cut(s) 92, 159, 1133, 1521, 1580
CspCI CAANNNNNGTGG 4 cut(s) 553, 588, 1249, 1284
CviAII CATG 8 cut(s) 288, 349, 614, 702, 1082, 1298, 1429, 1447
CviQI GTAC 5 cut(s) 92, 159, 1133, 1521, 1580
DdeI CTNAG 3 cut(s) 405, 474, 1507
DpnI GATC 4 cut(s) 212, 221, 612, 1512
DpnII GATC 4 cut(s) 210, 219, 610, 1510
EaeI YGGCCR 1 cut(s) 461
Eam1104I CTCTTC 1 cut(s) 6
EarI CTCTTC 1 cut(s) 6
EciI GGCGGA 1 cut(s) 792
Eco57I CTGAAG 2 cut(s) 1175, 1450
EcoRI GAATTC 3 cut(s) 330, 526, 1593
EcoRII CCWGG 1 cut(s) 1289
EcoT22I ATGCAT 2 cut(s) 840, 1430
FaeI CATG 8 cut(s) 291, 352, 617, 705, 1085, 1301, 1432, 1450
FatI CATG 8 cut(s) 287, 348, 613, 701, 1081, 1297, 1428, 1446
FauNDI CATATG 2 cut(s) 934, 1419
Fnu4HI GCNGC 6 cut(s) 67, 70, 750, 926, 1490, 1493
FokI GGATG 1 cut(s) 218
Fsp4HI GCNGC 6 cut(s) 67, 70, 750, 926, 1490, 1493
FspBI CTAG 4 cut(s) 506, 789, 1140, 1412
GlaI GCGC 3 cut(s) 33, 303, 1069
GluI GCNGC 6 cut(s) 67, 70, 750, 926, 1490, 1493
GsuI CTGGAG 2 cut(s) 1061, 1190
HaeII RGCGCY 1 cut(s) 1071
HaeIII GGCC 5 cut(s) 228, 312, 463, 1213, 1382
HapII CCGG 3 cut(s) 42, 107, 805
HgaI GACGC 2 cut(s) 242, 1004
HhaI GCGC 3 cut(s) 34, 304, 1070
Hin1I GRCGYC 1 cut(s) 234
Hin1II CATG 8 cut(s) 291, 352, 617, 705, 1085, 1301, 1432, 1450
Hin6I GCGC 3 cut(s) 32, 302, 1068
HinP1I GCGC 3 cut(s) 32, 302, 1068
HincII GTYRAC 1 cut(s) 119
HindII GTYRAC 1 cut(s) 119
HindIII AAGCTT 2 cut(s) 251, 389
HinfI GANTC 6 cut(s) 4, 148, 659, 1074, 1225, 1575
HpaII CCGG 3 cut(s) 42, 107, 805
HphI GGTGA 4 cut(s) 509, 1000, 1136, 1325
Hpy166II GTNNAC 3 cut(s) 119, 794, 1133
Hpy188I TCNGA 5 cut(s) 165, 406, 655, 898, 1469
Hpy188III TCNNGA 6 cut(s) 8, 217, 349, 614, 976, 1447
Hpy8I GTNNAC 3 cut(s) 119, 794, 1133
Hpy99I CGWCG 2 cut(s) 62, 236
HpyAV CCTTC 4 cut(s) 515, 802, 939, 1022
HpyCH4III ACNGT 8 cut(s) 62, 194, 285, 437, 497, 817, 1183, 1525
HpyCH4IV ACGT 1 cut(s) 172
HpyF10VI GCNNNNNNNGC 1 cut(s) 1087
HpyF3I CTNAG 3 cut(s) 405, 474, 1507
HpySE526I ACGT 1 cut(s) 172
Hsp92I GRCGYC 1 cut(s) 234
Hsp92II CATG 8 cut(s) 291, 352, 617, 705, 1085, 1301, 1432, 1450
HspAI GCGC 3 cut(s) 32, 302, 1068
Kzo9I GATC 4 cut(s) 210, 219, 610, 1510
Lsp1109I GCAGC 5 cut(s) 53, 761, 937, 1476, 1504
LweI GCATC 3 cut(s) 825, 874, 1176
MaeI CTAG 4 cut(s) 506, 789, 1140, 1412
MaeII ACGT 1 cut(s) 172
MaeIII GTNAC 4 cut(s) 139, 173, 497, 1006
MalI GATC 4 cut(s) 212, 221, 612, 1512
MboI GATC 4 cut(s) 210, 219, 610, 1510
MfeI CAATTG 1 cut(s) 1108
MflI RGATCY 1 cut(s) 210
MhlI GDGCHC 1 cut(s) 796
MlsI TGGCCA 1 cut(s) 463
MluNI TGGCCA 1 cut(s) 463
MlyI GAGTC 3 cut(s) 157, 1068, 1584
MmeI TCCRAC 3 cut(s) 67, 716, 1256
Mox20I TGGCCA 1 cut(s) 463
Mph1103I ATGCAT 2 cut(s) 840, 1430
MroXI GAANNNNTTC 1 cut(s) 971
MscI TGGCCA 1 cut(s) 463
MseI TTAA 5 cut(s) 294, 990, 1197, 1392, 1500
MslI CAYNNNNRTG 3 cut(s) 587, 618, 700
Msp20I TGGCCA 1 cut(s) 463
MspI CCGG 3 cut(s) 42, 107, 805
MspR9I CCNGG 2 cut(s) 42, 1291
MunI CAATTG 1 cut(s) 1108
Mva1269I GAATGC 1 cut(s) 838
MvaI CCWGG 1 cut(s) 1291
MwoI GCNNNNNNNGC 1 cut(s) 1087
NciI CCSGG 1 cut(s) 42
NdeI CATATG 2 cut(s) 934, 1419
NdeII GATC 4 cut(s) 210, 219, 610, 1510
NlaIII CATG 8 cut(s) 291, 352, 617, 705, 1085, 1301, 1432, 1450
NmuCI GTSAC 3 cut(s) 173, 497, 1006
NsiI ATGCAT 2 cut(s) 840, 1430
PagI TCATGA 3 cut(s) 348, 613, 1446
PctI GAATGC 1 cut(s) 838
PdmI GAANNNNTTC 1 cut(s) 971
PfeI GAWTC 2 cut(s) 659, 1225
PflFI GACNNNGTC 2 cut(s) 171, 1473
PkrI GCNGC 6 cut(s) 68, 71, 751, 927, 1491, 1494
PleI GAGTC 3 cut(s) 156, 1068, 1583
PpsI GAGTC 3 cut(s) 156, 1068, 1583
Psp6I CCWGG 1 cut(s) 1289
PspGI CCWGG 1 cut(s) 1289
PspPI GGNCC 1 cut(s) 1381
PstI CTGCAG 1 cut(s) 1494
PsuI RGATCY 1 cut(s) 210
PsyI GACNNNGTC 2 cut(s) 171, 1473
RsaI GTAC 5 cut(s) 93, 160, 1134, 1522, 1581
RsaNI GTAC 5 cut(s) 92, 159, 1133, 1521, 1580
RseI CAYNNNNRTG 3 cut(s) 587, 618, 700
SaqAI TTAA 5 cut(s) 294, 990, 1197, 1392, 1500
SatI GCNGC 6 cut(s) 67, 70, 750, 926, 1490, 1493
Sau3AI GATC 4 cut(s) 210, 219, 610, 1510
Sau96I GGNCC 1 cut(s) 1381
ScaI AGTACT 1 cut(s) 1522
SchI GAGTC 3 cut(s) 157, 1068, 1584
ScrFI CCNGG 2 cut(s) 42, 1291
SduI GDGCHC 1 cut(s) 796
SfaNI GCATC 3 cut(s) 825, 874, 1176
SfcI CTRYAG 1 cut(s) 1490
SmiMI CAYNNNNRTG 3 cut(s) 587, 618, 700
SmlI CTYRAG 3 cut(s) 215, 386, 864
SmoI CTYRAG 3 cut(s) 215, 386, 864
SpeI ACTAGT 2 cut(s) 1139, 1411
SsiI CCGC 5 cut(s) 69, 114, 399, 777, 1272
SspI AATATT 2 cut(s) 1354, 1554
SspMI CTAG 4 cut(s) 506, 789, 1140, 1412
StyD4I CCNGG 2 cut(s) 40, 1289
TaaI ACNGT 8 cut(s) 62, 194, 285, 437, 497, 817, 1183, 1525
TaiI ACGT 1 cut(s) 175
TaqI TCGA 4 cut(s) 57, 201, 231, 514
TatI WGTACW 2 cut(s) 158, 1520
TauI GCSGC 1 cut(s) 72
TfiI GAWTC 2 cut(s) 659, 1225
Tru1I TTAA 5 cut(s) 294, 990, 1197, 1392, 1500
Tru9I TTAA 5 cut(s) 294, 990, 1197, 1392, 1500
TscAI CASTG 3 cut(s) 849, 969, 1188
TseFI GTSAC 3 cut(s) 173, 497, 1006
TseI GCWGC 5 cut(s) 66, 749, 925, 1489, 1492
Tsp45I GTSAC 3 cut(s) 173, 497, 1006
TspGWI ACGGA 1 cut(s) 623
TspRI CASTG 3 cut(s) 849, 969, 1188
Tth111I GACNNNGTC 2 cut(s) 171, 1473
VneI GTGCAC 1 cut(s) 792
XapI RAATTY 8 cut(s) 133, 330, 341, 373, 526, 1219, 1432, 1593
XmnI GAANNNNTTC 1 cut(s) 971
XspI CTAG 4 cut(s) 506, 789, 1140, 1412
ZrmI AGTACT 1 cut(s) 1522
Zsp2I ATGCAT 2 cut(s) 840, 1430
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.