Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0000156

Physical Location & Seq

Genomic Coordinates Reverse (-)

13430946 .. 13432672

Gene Structure 1727 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G012840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGAAGGGGATTCTAGGTTTCAGGTTTCCTTATTTGATGGAAGCAACAACATGGAGATTGACTATACCACAAGAATGCTCGAAAGTGATGAAGTGGCTGCCTAAAACGTTTGTCCAGACACATCTTCTTAAGCAGCCTAGTAATGCTATACAGCCTATACTTCAAGTTTTGGGTGGAAGGAAAACTTGGCCTGTTAAATTGACATATGACGAAACAAAAGGAAGAGCCAAATTTCAGTCTGGTTGGACTGACTTTGTGAGAGACAAGAATATAAAAGATGGAGATGTGTGTGAGTTTGTGTTGATTGACAGCAACAGACTTGTATTTGAAGTTAGGATAAATACTGCAAATCGCACCTTATCACCAGGGCCTGCAGACATTGACGATGGTGATGATGAGGATGATGAAGATGAAGATGAAGAGGATAGTGATGATGAATCAATTGAAATCTTGGATCATTTTCCACCTCATCTGAAAAGAAAGGAGAAATCTCCATTGGCATCCAAGATTCATAAGAGAATGAGACCTAGTTCCAGAACTCAAAAATTCCCTGAAGGAGGACCTGAGGTTCCTAGGAAGATGCCTAGTCCTGTTATGGCAAGTTCTGGAAAATACATAGCTCTTCAGAGAGCTAATGGTTTCAAATCTGCAAACCCTGATTTCAGGATTTCATTACATTCCTCCTATATCACTGGACATTATTTGTATTTGCCAGCCAAGTTTGCCAATAGATATCTTGTTAAGCAGCCTAGACATGCCATCCTTCGGGTTGCAAGTAAAAAAACTTGGTCTGTCAACGTACGGTATGCTGCAGCAAGAACCACATTCCAAACTGGTTGGTTTGAATTTGTGCAAGATAATGATTTGAAACAGGGTGATGCTTGTATTTTCATGTTGACCAACAACATCAAGGTTGCATTTGATGTTGTATTTTTCCGAGCCACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

315

Amino Acids

36.12

Weight (kDa)

9.15

Isoelectric Point (pI)

53.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	29 - 113	8.4e-14	B3 DNA binding domain
B3	PF02362	223 - 304	1.5e-16	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000156)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49475 AT3G18960 AT3G18960 AT3G18960 AT4G01580
fragaria_vesca	FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14670 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14690 FvH4_1g14700 FvH4_1g29250 FvH4_6g29400 FvH4_6g38681 FvH4_6g38690 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_7g02010
malus_domestica	MD00G1020600.v1.1 MD00G1022000.v1.1 MD00G1022100.v1.1 MD02G1159700.v1.1 MD02G1159800.v1.1 MD02G1159900.v1.1 MD02G1160000.v1.1 MD02G1160300.v1.1 MD15G1274100.v1.1 MD15G1274200.v1.1 MD15G1274400.v1.1 MD15G1302000.v1.1
prunus_persica	Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.3G083400_v2.0.a1 Prupe.6G229600_v2.0.a1 Prupe.7G039600_v2.0.a1 Prupe.7G044500_v2.0.a1 Prupe.7G044800_v2.0.a1 Prupe.7G143100_v2.0.a1 Prupe.7G143500_v2.0.a1 Prupe.7G143600_v2.0.a1 Prupe.7G143700_v2.0.a1 Prupe.7G143800_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.8G072800_v2.0.a1 Prupe.8G072800_v2.0.a1
pyrus_communis	pycom02g12620 pycom02g12630 pycom15g23750 pycom15g26490 pycom17g21160
rosa_chinensis	RchiOBHm_Chr2g0103421 RchiOBHm_Chr2g0103431 RchiOBHm_Chr2g0103441 RchiOBHm_Chr2g0103491 RchiOBHm_Chr2g0103501 RchiOBHm_Chr2g0103521 RchiOBHm_Chr2g0103541 RchiOBHm_Chr2g0103551 RchiOBHm_Chr2g0103561 RchiOBHm_Chr2g0134821 RchiOBHm_Chr2g0152161 RchiOBHm_Chr2g0152181 RchiOBHm_Chr7g0227261 RchiOBHm_Chr7g0227351 RchiOBHm_Chr7g0227431
rosa_laevigata	RLG00000001649 RLG00000001653 RLG00000001659 RLG00000017235 RLG00000017236 RLG00000017240 RLG00000017241 RLG00000017242 RLG00000017243 RLG00000017244 RLG00000017349 RLG00000019424 RLG00000020614 RLG00000020615
rosa_multiflora	Rmu_co8247875.1_g000001 Rmu_co8429551.1_g000001 Rmu_sc0000173.1_g000009 Rmu_sc0000718.1_g000004 Rmu_sc0001530.1_g000001 Rmu_sc0001530.1_g000002 Rmu_sc0001530.1_g000004 Rmu_sc0001530.1_g000005 Rmu_sc0001852.1_g000023 Rmu_sc0001852.1_g000024 Rmu_sc0002434.1_g000001 Rmu_sc0002434.1_g000002 Rmu_sc0003043.1_g000016 Rmu_sc0003153.1_g000005 Rmu_sc0011039.1_g000001 Rmu_sc0031822.1_g000001
rosa_roxburghii	Rroxscaffold_2G00095860 Rroxscaffold_2G00095870 Rroxscaffold_2G00109720 Rroxscaffold_2G00139530 Rroxscaffold_2G00139550 Rroxscaffold_2G00139570 Rroxscaffold_2G00139580 Rroxscaffold_2G00139630 Rroxscaffold_2G00139640 Rroxscaffold_4G00328430 Rroxscaffold_4G00328440 Rroxscaffold_4G00328450
rosa_rugosa	Rorug02G0114900 Rorug02G0115000 Rorug02G0115000 Rorug02G0115200 Rorug02G0115300 Rorug02G0115400 Rorug02G0115500 Rorug02G0115600 Rorug02G0115600 Rorug02G0115600 Rorug02G0115700 Rorug02G0320300 Rorug02G0431300 Rorug02G0431300 Rorug06G0028200 Rorug07G0241300
rosa_samantha	Rh2AG163200 Rh2AG163300 Rh2AG163700 Rh2AG163800 Rh2AG163900 Rh2AG164000 Rh2AG373400 Rh2AG492600 Rh2BG170300 Rh2BG170400 Rh2BG170800 Rh2BG170900 Rh2BG171000 Rh2BG171100 Rh2BG171200 Rh2BG377800 Rh2BG505000 Rh2BG505100 Rh2BG505200 Rh2CG170300 Rh2CG170700 Rh2CG479000 Rh2DG169100 Rh2DG169200 Rh2DG169300 Rh2DG516400 Rh7AG391200 Rh7BG376200 Rh7CG410200 Rh7CG411500 Rh7CG412000 Rh7CG412700 Rh7DG388800
rosa_wichuraiana	Rw2G012830 Rw2G012840 Rw2G012870 Rw2G012880 Rw2G012890 Rw2G012900 Rw2G030310 Rw2G040470 Rw2G040480 Rw7G032720 Rw7G032730 Rw7G032750

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	107
AclWI	GGATC	1 cut(s)	462
AcsI	RAATTY	3 cut(s)	230, 545, 845
AcuI	CTGAAG	2 cut(s)	573, 608
AfaI	GTAC	1 cut(s)	801
AfiI	CCNNNNNNNGG	2 cut(s)	557, 765
AflII	CTTAAG	1 cut(s)	128
AgsI	TTSAA	6 cut(s)	164, 329, 446, 643, 845, 868
AjnI	CCWGG	1 cut(s)	364
AjuI	GAANNNNNNNTTGG	4 cut(s)	169, 201, 479, 511
AloI	GAACNNNNNNTCC	2 cut(s)	552, 584
AluBI	AGCT	2 cut(s)	620, 632
AluI	AGCT	2 cut(s)	620, 632
Alw26I	GTCTC	2 cut(s)	255, 517
AlwI	GGATC	1 cut(s)	462
AlwNI	CAGNNNCTG	1 cut(s)	371
AoxI	GGCC	2 cut(s)	188, 368
ApeKI	GCWGC	5 cut(s)	97, 133, 745, 809, 812
ApoI	RAATTY	3 cut(s)	230, 545, 845
AspA2I	CCTAGG	1 cut(s)	572
AspS9I	GGNCC	2 cut(s)	368, 560
AsuHPI	GGTGA	3 cut(s)	354, 401, 887
AvaII	GGWCC	1 cut(s)	560
AvrII	CCTAGG	1 cut(s)	572
AxyI	CCTNAGG	1 cut(s)	564
BbvI	GCAGC	5 cut(s)	84, 145, 757, 796, 824
BccI	CCATC	4 cut(s)	31, 272, 380, 767
BciT130I	CCWGG	1 cut(s)	366
BcoDI	GTCTC	2 cut(s)	255, 517
BfaI	CTAG	6 cut(s)	14, 138, 528, 573, 585, 750
BfmI	CTRYAG	2 cut(s)	372, 810
BfrI	CTTAAG	1 cut(s)	128
BisI	GCNGC	5 cut(s)	98, 134, 746, 810, 813
BlnI	CCTAGG	1 cut(s)	572
BlsI	GCNGC	5 cut(s)	99, 135, 747, 811, 814
Bme1390I	CCNGG	1 cut(s)	366
Bme18I	GGWCC	1 cut(s)	560
BmgT120I	GGNCC	2 cut(s)	368, 560
BmiI	GGNNCC	1 cut(s)	570
BmrFI	CCNGG	1 cut(s)	366
BmsI	GCATC	3 cut(s)	509, 570, 868
BsaI	GGTCTC	1 cut(s)	517
BsaJI	CCNNGG	2 cut(s)	365, 572
Bsc4I	CCNNNNNNNGG	2 cut(s)	557, 765
Bse1I	ACTGG	2 cut(s)	697, 838
Bse21I	CCTNAGG	1 cut(s)	564
BseBI	CCWGG	1 cut(s)	366
BseDI	CCNNGG	2 cut(s)	365, 572
BseGI	GGATG	3 cut(s)	406, 500, 759
BseLI	CCNNNNNNNGG	2 cut(s)	557, 765
BseMII	CTCAG	1 cut(s)	555
BseNI	ACTGG	2 cut(s)	697, 838
BseXI	GCAGC	5 cut(s)	84, 145, 757, 796, 824
BshFI	GGCC	2 cut(s)	190, 370
BsiWI	CGTACG	1 cut(s)	799
BslI	CCNNNNNNNGG	2 cut(s)	557, 765
BsmAI	GTCTC	2 cut(s)	255, 517
BsmI	GAATGC	1 cut(s)	80
BsnI	GGCC	2 cut(s)	190, 370
Bso31I	GGTCTC	1 cut(s)	517
Bsp143I	GATC	1 cut(s)	454
BspANI	GGCC	2 cut(s)	190, 370
BspCNI	CTCAG	1 cut(s)	556
BspLI	GGNNCC	1 cut(s)	570
BspMAI	CTGCAG	2 cut(s)	376, 814
BspPI	GGATC	1 cut(s)	462
BspQI	GCTCTTC	2 cut(s)	217, 627
BspTI	CTTAAG	1 cut(s)	128
BspTNI	GGTCTC	1 cut(s)	517
BsrI	ACTGG	2 cut(s)	697, 838
BssECI	CCNNGG	2 cut(s)	365, 572
BssMI	GATC	1 cut(s)	454
BssT1I	CCWWGG	1 cut(s)	572
Bst2UI	CCWGG	1 cut(s)	366
Bst4CI	ACNGT	1 cut(s)	804
Bst6I	CTCTTC	3 cut(s)	217, 414, 627
BstAFI	CTTAAG	1 cut(s)	128
BstC8I	GCNNGC	2 cut(s)	372, 714
BstDEI	CTNAG	1 cut(s)	564
BstENI	CCTNNNNNAGG	1 cut(s)	555
BstF5I	GGATG	3 cut(s)	406, 500, 759
BstKTI	GATC	1 cut(s)	457
BstMAI	GTCTC	2 cut(s)	255, 517
BstMBI	GATC	1 cut(s)	454
BstMWI	GCNNNNNNNGC	1 cut(s)	722
BstNI	CCWGG	1 cut(s)	366
BstNSI	RCATGY	1 cut(s)	758
BstSCI	CCNGG	1 cut(s)	364
BstSFI	CTRYAG	2 cut(s)	372, 810
BstV1I	GCAGC	5 cut(s)	84, 145, 757, 796, 824
Bsu36I	CCTNAGG	1 cut(s)	564
BsuRI	GGCC	2 cut(s)	190, 370
BtsCI	GGATG	3 cut(s)	406, 500, 759
BtsIMutI	CAGTG	1 cut(s)	690
Cac8I	GCNNGC	2 cut(s)	372, 714
CaiI	CAGNNNCTG	1 cut(s)	371
Cfr13I	GGNCC	2 cut(s)	368, 560
Csp6I	GTAC	1 cut(s)	800
CviAII	CATG	3 cut(s)	51, 755, 892
CviQI	GTAC	1 cut(s)	800
DdeI	CTNAG	1 cut(s)	564
DpnI	GATC	1 cut(s)	456
DpnII	GATC	1 cut(s)	454
Eam1104I	CTCTTC	3 cut(s)	217, 414, 627
EarI	CTCTTC	3 cut(s)	217, 414, 627
Eco130I	CCWWGG	1 cut(s)	572
Eco31I	GGTCTC	1 cut(s)	517
Eco32I	GATATC	1 cut(s)	734
Eco47I	GGWCC	1 cut(s)	560
Eco57I	CTGAAG	2 cut(s)	573, 608
Eco81I	CCTNAGG	1 cut(s)	564
EcoNI	CCTNNNNNAGG	1 cut(s)	555
EcoO109I	RGGNCCY	2 cut(s)	368, 560
EcoRII	CCWGG	1 cut(s)	364
EcoRV	GATATC	1 cut(s)	734
EcoT14I	CCWWGG	1 cut(s)	572
ErhI	CCWWGG	1 cut(s)	572
FaeI	CATG	3 cut(s)	54, 758, 895
FalI	AAGNNNNNCTT	2 cut(s)	169, 201
FatI	CATG	3 cut(s)	50, 754, 891
FauNDI	CATATG	1 cut(s)	205
Fnu4HI	GCNGC	5 cut(s)	98, 134, 746, 810, 813
FokI	GGATG	3 cut(s)	413, 487, 746
Fsp4HI	GCNGC	5 cut(s)	98, 134, 746, 810, 813
FspBI	CTAG	6 cut(s)	14, 138, 528, 573, 585, 750
GluI	GCNGC	5 cut(s)	98, 134, 746, 810, 813
HaeIII	GGCC	2 cut(s)	190, 370
Hin1II	CATG	3 cut(s)	54, 758, 895
HincII	GTYRAC	2 cut(s)	796, 897
HindII	GTYRAC	2 cut(s)	796, 897
HinfI	GANTC	3 cut(s)	10, 437, 508
HphI	GGTGA	3 cut(s)	354, 401, 887
Hpy166II	GTNNAC	2 cut(s)	796, 897
Hpy188I	TCNGA	3 cut(s)	474, 627, 938
Hpy188III	TCNNGA	4 cut(s)	115, 534, 606, 664
Hpy8I	GTNNAC	2 cut(s)	796, 897
HpyAV	CCTTC	3 cut(s)	171, 548, 773
HpyCH4III	ACNGT	1 cut(s)	804
HpyCH4IV	ACGT	2 cut(s)	107, 798
HpyCH4V	TGCA	7 cut(s)	347, 374, 650, 773, 812, 853, 917
HpyF10VI	GCNNNNNNNGC	1 cut(s)	722
HpyF3I	CTNAG	1 cut(s)	564
HpySE526I	ACGT	2 cut(s)	107, 798
Hsp92II	CATG	3 cut(s)	54, 758, 895
Kzo9I	GATC	1 cut(s)	454
LguI	GCTCTTC	2 cut(s)	217, 627
Lsp1109I	GCAGC	5 cut(s)	84, 145, 757, 796, 824
LweI	GCATC	3 cut(s)	509, 570, 868
MaeI	CTAG	6 cut(s)	14, 138, 528, 573, 585, 750
MaeII	ACGT	2 cut(s)	107, 798
MalI	GATC	1 cut(s)	456
MboI	GATC	1 cut(s)	454
MboII	GAAGA	7 cut(s)	116, 234, 419, 425, 431, 589, 614
MfeI	CAATTG	1 cut(s)	441
MluCI	AATT	5 cut(s)	197, 230, 441, 545, 845
MmeI	TCCRAC	1 cut(s)	224
MnlI	CCTC	6 cut(s)	391, 415, 477, 551, 559, 691
MseI	TTAA	3 cut(s)	129, 195, 741
MslI	CAYNNNNRTG	1 cut(s)	73
MspCI	CTTAAG	1 cut(s)	128
MspR9I	CCNGG	1 cut(s)	366
MunI	CAATTG	1 cut(s)	441
Mva1269I	GAATGC	1 cut(s)	80
MvaI	CCWGG	1 cut(s)	366
MwoI	GCNNNNNNNGC	1 cut(s)	722
NdeI	CATATG	1 cut(s)	205
NdeII	GATC	1 cut(s)	454
NlaIII	CATG	3 cut(s)	54, 758, 895
NlaIV	GGNNCC	1 cut(s)	570
NspI	RCATGY	1 cut(s)	758
PciSI	GCTCTTC	2 cut(s)	217, 627
PctI	GAATGC	1 cut(s)	80
PfeI	GAWTC	3 cut(s)	10, 437, 508
Pfl23II	CGTACG	1 cut(s)	799
PkrI	GCNGC	5 cut(s)	99, 135, 747, 811, 814
PpuMI	RGGWCCY	1 cut(s)	560
Psp1406I	AACGTT	1 cut(s)	107
Psp5II	RGGWCCY	1 cut(s)	560
Psp6I	CCWGG	1 cut(s)	364
PspGI	CCWGG	1 cut(s)	364
PspLI	CGTACG	1 cut(s)	799
PspN4I	GGNNCC	1 cut(s)	570
PspPI	GGNCC	2 cut(s)	368, 560
PspPPI	RGGWCCY	1 cut(s)	560
PstI	CTGCAG	2 cut(s)	376, 814
PstNI	CAGNNNCTG	1 cut(s)	371
RsaI	GTAC	1 cut(s)	801
RsaNI	GTAC	1 cut(s)	800
RseI	CAYNNNNRTG	1 cut(s)	73
SapI	GCTCTTC	2 cut(s)	217, 627
SaqAI	TTAA	3 cut(s)	129, 195, 741
SatI	GCNGC	5 cut(s)	98, 134, 746, 810, 813
Sau3AI	GATC	1 cut(s)	454
Sau96I	GGNCC	2 cut(s)	368, 560
ScrFI	CCNGG	1 cut(s)	366
SfaNI	GCATC	3 cut(s)	509, 570, 868
SfcI	CTRYAG	2 cut(s)	372, 810
SinI	GGWCC	1 cut(s)	560
SmiMI	CAYNNNNRTG	1 cut(s)	73
SmlI	CTYRAG	1 cut(s)	128
SmoI	CTYRAG	1 cut(s)	128
Sse9I	AATT	5 cut(s)	197, 230, 441, 545, 845
SspMI	CTAG	6 cut(s)	14, 138, 528, 573, 585, 750
StyD4I	CCNGG	1 cut(s)	364
StyI	CCWWGG	1 cut(s)	572
TaaI	ACNGT	1 cut(s)	804
TaiI	ACGT	2 cut(s)	110, 801
TaqI	TCGA	1 cut(s)	80
TasI	AATT	5 cut(s)	197, 230, 441, 545, 845
TfiI	GAWTC	3 cut(s)	10, 437, 508
Tru1I	TTAA	3 cut(s)	129, 195, 741
Tru9I	TTAA	3 cut(s)	129, 195, 741
TscAI	CASTG	1 cut(s)	697
TseI	GCWGC	5 cut(s)	97, 133, 745, 809, 812
TspDTI	ATGAA	9 cut(s)	17, 104, 420, 426, 432, 450, 500, 660, 880
TspRI	CASTG	1 cut(s)	697
Vha464I	CTTAAG	1 cut(s)	128
VpaK11BI	GGWCC	1 cut(s)	560
XagI	CCTNNNNNAGG	1 cut(s)	555
XapI	RAATTY	3 cut(s)	230, 545, 845
XceI	RCATGY	1 cut(s)	758
XmaJI	CCTAGG	1 cut(s)	572
XspI	CTAG	6 cut(s)	14, 138, 528, 573, 585, 750

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.