Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0000156

Physical Location & Seq

Genomic Coordinates Reverse (-)

8222980 .. 8224432

Gene Structure 1453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g14690.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGAGTGCTTTTCGCCAAGCATTTTCTGCTACTACCCGATTTTTCAAGGTTATTGTGGAGGAAAGTTCTAGCATCAAACTGAAGATTCCACCAAAATTTGTGATGAAATATGGAGACTACTTATCAAAATCAGTGCGTCTTAAGCTTCCAGAAATGAGTGCTTTTCGCCAAGCATTTTCTGCTACTACCCGATTTTTCAAGGTTATTGTGGAGGAAAGTTCTAGCATCAAACTGAAGATTCCACCAAAATTTGTGATGAAATATGGAGACTACTTATCAAAATCAGTGCGTCTTAAGCTTCCAAGTGGTTGTCAATGGCAAGTAGAAGTGACAAAAAGTGACAGTGAGGTTTGGTTCGATAAGGGTTGGCCAGAGTTCTTCAAGTTTTACACCCTAAACTACGGTCACTTTGTAATTTTTACATACCATGGGAATTCTATGTTTGAAGTTTGCATATTTGATAGAACTGCAACAGAGATTGAATATCCCATCATTATGGATAAGTGTTATGTTGAAAGTGAACCCTCCATTAAAAAATTGGAAGATTTTATCCCCTGCCCTAAAATAAGAGACAATTCTCCATCACCATCTGCTAGGCTTCCCAGAAGAAGGAGAACAGCTAGTCCAACTACTGAAGCCAATATAAAAGGGAAAGAAGATGATTTTTCCAGGAAAAATGATGGGGGAGACCCGGCTACAGCTCTTCAGAGAGTCAAGGCATTTAAATCTGAAAATGCTTTTATCATGATATTCATGCAGCCCAGTTACATCCATCGTTATTCTGTGAGTATACCCTTTCGATTTGTCATGAACTTCGCAAAATTCAGGCAGCAGGTTGTGAAGCTTCTTGTTGGAGATAGATCTTGGCCTGCTCGTCTGAACGTGTCTAGCCTGCATGGTAAAGCTAAAATTAGTAGCGGTTGGCATGAATTTGTGATAGAAAATCATTTAAGACTAGGAGATGTTTGTATATTTGAGCTCATGGAGGTGAATGACCTTGTACTGAAAGTTCACATATTTAGAGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

343

Amino Acids

39.64

Weight (kDa)

9.6

Isoelectric Point (pI)

43.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	65 - 155	8.1e-15	B3 DNA binding domain
B3	PF02362	248 - 341	6.9e-12	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000156)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49475 AT3G18960 AT3G18960 AT3G18960 AT4G01580
fragaria_vesca	FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14670 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14690 FvH4_1g14700 FvH4_1g29250 FvH4_6g29400 FvH4_6g38681 FvH4_6g38690 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_7g02010
malus_domestica	MD00G1020600.v1.1 MD00G1022000.v1.1 MD00G1022100.v1.1 MD02G1159700.v1.1 MD02G1159800.v1.1 MD02G1159900.v1.1 MD02G1160000.v1.1 MD02G1160300.v1.1 MD15G1274100.v1.1 MD15G1274200.v1.1 MD15G1274400.v1.1 MD15G1302000.v1.1
prunus_persica	Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.3G083400_v2.0.a1 Prupe.6G229600_v2.0.a1 Prupe.7G039600_v2.0.a1 Prupe.7G044500_v2.0.a1 Prupe.7G044800_v2.0.a1 Prupe.7G143100_v2.0.a1 Prupe.7G143500_v2.0.a1 Prupe.7G143600_v2.0.a1 Prupe.7G143700_v2.0.a1 Prupe.7G143800_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.8G072800_v2.0.a1 Prupe.8G072800_v2.0.a1
pyrus_communis	pycom02g12620 pycom02g12630 pycom15g23750 pycom15g26490 pycom17g21160
rosa_chinensis	RchiOBHm_Chr2g0103421 RchiOBHm_Chr2g0103431 RchiOBHm_Chr2g0103441 RchiOBHm_Chr2g0103491 RchiOBHm_Chr2g0103501 RchiOBHm_Chr2g0103521 RchiOBHm_Chr2g0103541 RchiOBHm_Chr2g0103551 RchiOBHm_Chr2g0103561 RchiOBHm_Chr2g0134821 RchiOBHm_Chr2g0152161 RchiOBHm_Chr2g0152181 RchiOBHm_Chr7g0227261 RchiOBHm_Chr7g0227351 RchiOBHm_Chr7g0227431
rosa_laevigata	RLG00000001649 RLG00000001653 RLG00000001659 RLG00000017235 RLG00000017236 RLG00000017240 RLG00000017241 RLG00000017242 RLG00000017243 RLG00000017244 RLG00000017349 RLG00000019424 RLG00000020614 RLG00000020615
rosa_multiflora	Rmu_co8247875.1_g000001 Rmu_co8429551.1_g000001 Rmu_sc0000173.1_g000009 Rmu_sc0000718.1_g000004 Rmu_sc0001530.1_g000001 Rmu_sc0001530.1_g000002 Rmu_sc0001530.1_g000004 Rmu_sc0001530.1_g000005 Rmu_sc0001852.1_g000023 Rmu_sc0001852.1_g000024 Rmu_sc0002434.1_g000001 Rmu_sc0002434.1_g000002 Rmu_sc0003043.1_g000016 Rmu_sc0003153.1_g000005 Rmu_sc0011039.1_g000001 Rmu_sc0031822.1_g000001
rosa_roxburghii	Rroxscaffold_2G00095860 Rroxscaffold_2G00095870 Rroxscaffold_2G00109720 Rroxscaffold_2G00139530 Rroxscaffold_2G00139550 Rroxscaffold_2G00139570 Rroxscaffold_2G00139580 Rroxscaffold_2G00139630 Rroxscaffold_2G00139640 Rroxscaffold_4G00328430 Rroxscaffold_4G00328440 Rroxscaffold_4G00328450
rosa_rugosa	Rorug02G0114900 Rorug02G0115000 Rorug02G0115000 Rorug02G0115200 Rorug02G0115300 Rorug02G0115400 Rorug02G0115500 Rorug02G0115600 Rorug02G0115600 Rorug02G0115600 Rorug02G0115700 Rorug02G0320300 Rorug02G0431300 Rorug02G0431300 Rorug06G0028200 Rorug07G0241300
rosa_samantha	Rh2AG163200 Rh2AG163300 Rh2AG163700 Rh2AG163800 Rh2AG163900 Rh2AG164000 Rh2AG373400 Rh2AG492600 Rh2BG170300 Rh2BG170400 Rh2BG170800 Rh2BG170900 Rh2BG171000 Rh2BG171100 Rh2BG171200 Rh2BG377800 Rh2BG505000 Rh2BG505100 Rh2BG505200 Rh2CG170300 Rh2CG170700 Rh2CG479000 Rh2DG169100 Rh2DG169200 Rh2DG169300 Rh2DG516400 Rh7AG391200 Rh7BG376200 Rh7CG410200 Rh7CG411500 Rh7CG412000 Rh7CG412700 Rh7DG388800
rosa_wichuraiana	Rw2G012830 Rw2G012840 Rw2G012870 Rw2G012880 Rw2G012890 Rw2G012900 Rw2G030310 Rw2G040470 Rw2G040480 Rw7G032720 Rw7G032730 Rw7G032750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	823
AccI	GTMKAC	1 cut(s)	790
AciI	CCGC	1 cut(s)	918
AcoI	YGGCCR	1 cut(s)	368
AcsI	RAATTY	5 cut(s)	95, 248, 433, 821, 929
AcuI	CTGAAG	4 cut(s)	101, 254, 654, 689
AfaI	GTAC	1 cut(s)	1002
AfiI	CCNNNNNNNGG	1 cut(s)	609
AflII	CTTAAG	2 cut(s)	140, 293
AflIII	ACRYGT	1 cut(s)	882
AgsI	TTSAA	6 cut(s)	46, 199, 382, 446, 482, 515
AjnI	CCWGG	1 cut(s)	668
AloI	GAACNNNNNNTCC	2 cut(s)	607, 639
AluBI	AGCT	7 cut(s)	145, 298, 620, 701, 844, 905, 979
AluI	AGCT	7 cut(s)	145, 298, 620, 701, 844, 905, 979
Alw21I	GWGCWC	1 cut(s)	981
Alw26I	GTCTC	4 cut(s)	108, 261, 564, 681
AoxI	GGCC	2 cut(s)	368, 866
ApeKI	GCWGC	2 cut(s)	757, 829
ApoI	RAATTY	5 cut(s)	95, 248, 433, 821, 929
AsuC2I	CCSGG	1 cut(s)	692
AsuHPI	GGTGA	2 cut(s)	576, 1000
BalI	TGGCCA	1 cut(s)	370
BanII	GRGCYC	1 cut(s)	981
Bbv12I	GWGCWC	1 cut(s)	981
BbvI	GCAGC	2 cut(s)	769, 841
BccI	CCATC	5 cut(s)	497, 589, 595, 674, 780
BciT130I	CCWGG	1 cut(s)	670
BcnI	CCSGG	1 cut(s)	692
BcoDI	GTCTC	4 cut(s)	108, 261, 564, 681
BfaI	CTAG	6 cut(s)	69, 222, 594, 621, 888, 956
BfmI	CTRYAG	1 cut(s)	696
BfrI	CTTAAG	2 cut(s)	140, 293
BfuAI	ACCTGC	1 cut(s)	823
BglII	AGATCT	1 cut(s)	860
BisI	GCNGC	2 cut(s)	758, 830
BlsI	GCNGC	2 cut(s)	759, 831
Bme1390I	CCNGG	2 cut(s)	670, 692
BmrFI	CCNGG	2 cut(s)	670, 692
BmrI	ACTGGG	1 cut(s)	756
BmsI	GCATC	2 cut(s)	81, 234
BmuI	ACTGGG	1 cut(s)	756
BpuMI	CCSGG	1 cut(s)	692
BsaI	GGTCTC	1 cut(s)	681
BsaJI	CCNNGG	1 cut(s)	427
Bsc4I	CCNNNNNNNGG	1 cut(s)	609
Bse1I	ACTGG	1 cut(s)	762
BseBI	CCWGG	1 cut(s)	670
BseDI	CCNNGG	1 cut(s)	427
BseGI	GGATG	1 cut(s)	768
BseLI	CCNNNNNNNGG	1 cut(s)	609
BseNI	ACTGG	1 cut(s)	762
BseXI	GCAGC	2 cut(s)	769, 841
BshFI	GGCC	2 cut(s)	370, 868
BsiHKAI	GWGCWC	1 cut(s)	981
BsiSI	CCGG	1 cut(s)	692
BslI	CCNNNNNNNGG	1 cut(s)	609
BsmAI	GTCTC	4 cut(s)	108, 261, 564, 681
BsnI	GGCC	2 cut(s)	370, 868
Bso31I	GGTCTC	1 cut(s)	681
Bsp1286I	GDGCHC	1 cut(s)	981
Bsp143I	GATC	1 cut(s)	860
Bsp19I	CCATGG	1 cut(s)	427
BspACI	CCGC	1 cut(s)	918
BspANI	GGCC	2 cut(s)	370, 868
BspHI	TCATGA	2 cut(s)	744, 807
BspMI	ACCTGC	1 cut(s)	823
BspQI	GCTCTTC	1 cut(s)	708
BspTI	CTTAAG	2 cut(s)	140, 293
BspTNI	GGTCTC	1 cut(s)	681
BsrI	ACTGG	1 cut(s)	762
BssECI	CCNNGG	1 cut(s)	427
BssMI	GATC	1 cut(s)	860
BssNAI	GTATAC	1 cut(s)	791
BssT1I	CCWWGG	1 cut(s)	427
Bst1107I	GTATAC	1 cut(s)	791
Bst2UI	CCWGG	1 cut(s)	670
Bst4CI	ACNGT	2 cut(s)	344, 404
Bst6I	CTCTTC	1 cut(s)	708
BstAFI	CTTAAG	2 cut(s)	140, 293
BstAPI	GCANNNNNTGC	2 cut(s)	26, 179
BstC8I	GCNNGC	2 cut(s)	870, 893
BstDSI	CCRYGG	1 cut(s)	427
BstF5I	GGATG	1 cut(s)	768
BstKTI	GATC	1 cut(s)	863
BstMAI	GTCTC	4 cut(s)	108, 261, 564, 681
BstMBI	GATC	1 cut(s)	860
BstMWI	GCNNNNNNNGC	4 cut(s)	26, 142, 179, 295
BstNI	CCWGG	1 cut(s)	670
BstSCI	CCNGG	2 cut(s)	668, 690
BstSFI	CTRYAG	1 cut(s)	696
BstV1I	GCAGC	2 cut(s)	769, 841
BstX2I	RGATCY	1 cut(s)	860
BstXI	CCANNNNNNTGG	1 cut(s)	496
BstYI	RGATCY	1 cut(s)	860
BstZ17I	GTATAC	1 cut(s)	791
BsuRI	GGCC	2 cut(s)	370, 868
BtgI	CCRYGG	1 cut(s)	427
BtsCI	GGATG	1 cut(s)	768
BtsIMutI	CAGTG	3 cut(s)	138, 291, 349
BveI	ACCTGC	1 cut(s)	823
Cac8I	GCNNGC	2 cut(s)	870, 893
CciI	TCATGA	2 cut(s)	744, 807
CseI	GACGC	2 cut(s)	125, 278
Csp6I	GTAC	1 cut(s)	1001
CviAII	CATG	7 cut(s)	428, 745, 754, 808, 896, 926, 982
CviQI	GTAC	1 cut(s)	1001
DpnI	GATC	1 cut(s)	862
DpnII	GATC	1 cut(s)	860
DraI	TTTAAA	1 cut(s)	724
EaeI	YGGCCR	1 cut(s)	368
Eam1104I	CTCTTC	1 cut(s)	708
EarI	CTCTTC	1 cut(s)	708
Ecl136II	GAGCTC	1 cut(s)	979
Eco130I	CCWWGG	1 cut(s)	427
Eco24I	GRGCYC	1 cut(s)	981
Eco31I	GGTCTC	1 cut(s)	681
Eco53kI	GAGCTC	1 cut(s)	979
Eco57I	CTGAAG	4 cut(s)	101, 254, 654, 689
EcoICRI	GAGCTC	1 cut(s)	979
EcoRI	GAATTC	1 cut(s)	433
EcoRII	CCWGG	1 cut(s)	668
EcoT14I	CCWWGG	1 cut(s)	427
EcoT38I	GRGCYC	1 cut(s)	981
ErhI	CCWWGG	1 cut(s)	427
FaeI	CATG	7 cut(s)	431, 748, 757, 811, 899, 929, 985
FatI	CATG	7 cut(s)	427, 744, 753, 807, 895, 925, 981
FblI	GTMKAC	1 cut(s)	790
Fnu4HI	GCNGC	2 cut(s)	758, 830
FokI	GGATG	1 cut(s)	755
FriOI	GRGCYC	1 cut(s)	981
Fsp4HI	GCNGC	2 cut(s)	758, 830
FspBI	CTAG	6 cut(s)	69, 222, 594, 621, 888, 956
GluI	GCNGC	2 cut(s)	758, 830
HaeIII	GGCC	2 cut(s)	370, 868
HapII	CCGG	1 cut(s)	692
HgaI	GACGC	2 cut(s)	125, 278
Hin1II	CATG	7 cut(s)	431, 748, 757, 811, 899, 929, 985
HindIII	AAGCTT	3 cut(s)	143, 296, 842
HinfI	GANTC	3 cut(s)	85, 238, 711
HpaII	CCGG	1 cut(s)	692
HphI	GGTGA	2 cut(s)	576, 1000
Hpy166II	GTNNAC	3 cut(s)	521, 791, 1012
Hpy188I	TCNGA	3 cut(s)	708, 730, 879
Hpy188III	TCNNGA	3 cut(s)	149, 745, 808
Hpy8I	GTNNAC	3 cut(s)	521, 791, 1012
HpyAV	CCTTC	1 cut(s)	603
HpyCH4III	ACNGT	2 cut(s)	344, 404
HpyCH4IV	ACGT	1 cut(s)	882
HpyCH4V	TGCA	4 cut(s)	453, 470, 757, 895
HpyF10VI	GCNNNNNNNGC	4 cut(s)	26, 142, 179, 295
HpySE526I	ACGT	1 cut(s)	882
Hsp92II	CATG	7 cut(s)	431, 748, 757, 811, 899, 929, 985
Kzo9I	GATC	1 cut(s)	860
LguI	GCTCTTC	1 cut(s)	708
Lsp1109I	GCAGC	2 cut(s)	769, 841
LweI	GCATC	2 cut(s)	81, 234
MaeI	CTAG	6 cut(s)	69, 222, 594, 621, 888, 956
MaeII	ACGT	1 cut(s)	882
MaeIII	GTNAC	4 cut(s)	328, 338, 404, 764
MalI	GATC	1 cut(s)	862
MboI	GATC	1 cut(s)	860
MboII	GAAGA	7 cut(s)	94, 247, 370, 554, 618, 668, 695
MflI	RGATCY	1 cut(s)	860
MhlI	GDGCHC	1 cut(s)	981
MlsI	TGGCCA	1 cut(s)	370
MluCI	AATT	9 cut(s)	95, 248, 414, 433, 536, 574, 821, 909, 929
MluNI	TGGCCA	1 cut(s)	370
MlyI	GAGTC	1 cut(s)	720
MmeI	TCCRAC	2 cut(s)	650, 832
MnlI	CCTC	6 cut(s)	52, 205, 340, 535, 979, 1016
Mox20I	TGGCCA	1 cut(s)	370
MscI	TGGCCA	1 cut(s)	370
MseI	TTAA	5 cut(s)	141, 294, 531, 723, 950
MslI	CAYNNNNRTG	2 cut(s)	494, 986
Msp20I	TGGCCA	1 cut(s)	370
MspCI	CTTAAG	2 cut(s)	140, 293
MspI	CCGG	1 cut(s)	692
MspR9I	CCNGG	2 cut(s)	670, 692
MvaI	CCWGG	1 cut(s)	670
MwoI	GCNNNNNNNGC	4 cut(s)	26, 142, 179, 295
NciI	CCSGG	1 cut(s)	692
NcoI	CCATGG	1 cut(s)	427
NdeII	GATC	1 cut(s)	860
NlaIII	CATG	7 cut(s)	431, 748, 757, 811, 899, 929, 985
NmuCI	GTSAC	3 cut(s)	328, 338, 404
PagI	TCATGA	2 cut(s)	744, 807
PciSI	GCTCTTC	1 cut(s)	708
PfeI	GAWTC	2 cut(s)	85, 238
PfoI	TCCNGGA	1 cut(s)	668
PkrI	GCNGC	2 cut(s)	759, 831
PleI	GAGTC	1 cut(s)	719
PpsI	GAGTC	1 cut(s)	719
Psp124BI	GAGCTC	1 cut(s)	981
Psp6I	CCWGG	1 cut(s)	668
PspGI	CCWGG	1 cut(s)	668
PsrI	GAACNNNNNNTAC	2 cut(s)	993, 1025
PsuI	RGATCY	1 cut(s)	860
RsaI	GTAC	1 cut(s)	1002
RsaNI	GTAC	1 cut(s)	1001
RseI	CAYNNNNRTG	2 cut(s)	494, 986
SacI	GAGCTC	1 cut(s)	981
SapI	GCTCTTC	1 cut(s)	708
SaqAI	TTAA	5 cut(s)	141, 294, 531, 723, 950
SatI	GCNGC	2 cut(s)	758, 830
Sau3AI	GATC	1 cut(s)	860
SchI	GAGTC	1 cut(s)	720
ScrFI	CCNGG	2 cut(s)	670, 692
SduI	GDGCHC	1 cut(s)	981
SfaNI	GCATC	2 cut(s)	81, 234
SfcI	CTRYAG	1 cut(s)	696
SmiI	ATTTAAAT	1 cut(s)	724
SmiMI	CAYNNNNRTG	2 cut(s)	494, 986
SmlI	CTYRAG	2 cut(s)	140, 293
SmoI	CTYRAG	2 cut(s)	140, 293
Sse9I	AATT	9 cut(s)	95, 248, 414, 433, 536, 574, 821, 909, 929
SsiI	CCGC	1 cut(s)	918
SspMI	CTAG	6 cut(s)	69, 222, 594, 621, 888, 956
SstI	GAGCTC	1 cut(s)	981
StyD4I	CCNGG	2 cut(s)	668, 690
StyI	CCWWGG	1 cut(s)	427
SwaI	ATTTAAAT	1 cut(s)	724
TaaI	ACNGT	2 cut(s)	344, 404
TaiI	ACGT	1 cut(s)	885
TaqI	TCGA	2 cut(s)	357, 799
TasI	AATT	9 cut(s)	95, 248, 414, 433, 536, 574, 821, 909, 929
TatI	WGTACW	1 cut(s)	1000
TfiI	GAWTC	2 cut(s)	85, 238
Tru1I	TTAA	5 cut(s)	141, 294, 531, 723, 950
Tru9I	TTAA	5 cut(s)	141, 294, 531, 723, 950
TscAI	CASTG	3 cut(s)	138, 291, 349
TseFI	GTSAC	3 cut(s)	328, 338, 404
TseI	GCWGC	2 cut(s)	757, 829
Tsp45I	GTSAC	3 cut(s)	328, 338, 404
TspDTI	ATGAA	5 cut(s)	119, 272, 742, 824, 942
TspRI	CASTG	3 cut(s)	138, 291, 349
Vha464I	CTTAAG	2 cut(s)	140, 293
XapI	RAATTY	5 cut(s)	95, 248, 433, 821, 929
XcmI	CCANNNNNNNNNTGG	1 cut(s)	535
XmiI	GTMKAC	1 cut(s)	790
XspI	CTAG	6 cut(s)	69, 222, 594, 621, 888, 956

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.