Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000156

Physical Location & Seq

Genomic Coordinates Forward (+)

77923118 .. 77930412

Gene Structure 7295 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00139570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGTTGTTCCTATCATCACGACCACAATGCCACATGAGAAAGCTAGAAATGGAGCTGTCATCCAAGTTAAGCCAATCGCAAACAAAGATTCACATTGCTCCAAAGCAGAAATAAAAAAGGAAACTGATTTTGCCACAAAAACTGATGGTGGATGCTTATCTAGGCCTGAAACATTTCCAAAGCAAACATGCCATGAGAATCTTGGGAGGATGAAGCCATCGACTACAACTGAGAAAGCTGTAGCCCTTCAAAGGGCTAATGCTTTCAAATCTGATAAACCTTCTTTCAAGATGGCTATGCAGCCCTCTCATATCCATGGCGGTACTGTTGTAAGTCATCTATGTACATCCCTACTAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

120

Amino Acids

13.04

Weight (kDa)

9.48

Isoelectric Point (pI)

47.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000156)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49475 AT3G18960 AT3G18960 AT3G18960 AT4G01580
fragaria_vesca	FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14670 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14690 FvH4_1g14700 FvH4_1g29250 FvH4_6g29400 FvH4_6g38681 FvH4_6g38690 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_7g02010
malus_domestica	MD00G1020600.v1.1 MD00G1022000.v1.1 MD00G1022100.v1.1 MD02G1159700.v1.1 MD02G1159800.v1.1 MD02G1159900.v1.1 MD02G1160000.v1.1 MD02G1160300.v1.1 MD15G1274100.v1.1 MD15G1274200.v1.1 MD15G1274400.v1.1 MD15G1302000.v1.1
prunus_persica	Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.3G083400_v2.0.a1 Prupe.6G229600_v2.0.a1 Prupe.7G039600_v2.0.a1 Prupe.7G044500_v2.0.a1 Prupe.7G044800_v2.0.a1 Prupe.7G143100_v2.0.a1 Prupe.7G143500_v2.0.a1 Prupe.7G143600_v2.0.a1 Prupe.7G143700_v2.0.a1 Prupe.7G143800_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.8G072800_v2.0.a1 Prupe.8G072800_v2.0.a1
pyrus_communis	pycom02g12620 pycom02g12630 pycom15g23750 pycom15g26490 pycom17g21160
rosa_chinensis	RchiOBHm_Chr2g0103421 RchiOBHm_Chr2g0103431 RchiOBHm_Chr2g0103441 RchiOBHm_Chr2g0103491 RchiOBHm_Chr2g0103501 RchiOBHm_Chr2g0103521 RchiOBHm_Chr2g0103541 RchiOBHm_Chr2g0103551 RchiOBHm_Chr2g0103561 RchiOBHm_Chr2g0134821 RchiOBHm_Chr2g0152161 RchiOBHm_Chr2g0152181 RchiOBHm_Chr7g0227261 RchiOBHm_Chr7g0227351 RchiOBHm_Chr7g0227431
rosa_laevigata	RLG00000001649 RLG00000001653 RLG00000001659 RLG00000017235 RLG00000017236 RLG00000017240 RLG00000017241 RLG00000017242 RLG00000017243 RLG00000017244 RLG00000017349 RLG00000019424 RLG00000020614 RLG00000020615
rosa_multiflora	Rmu_co8247875.1_g000001 Rmu_co8429551.1_g000001 Rmu_sc0000173.1_g000009 Rmu_sc0000718.1_g000004 Rmu_sc0001530.1_g000001 Rmu_sc0001530.1_g000002 Rmu_sc0001530.1_g000004 Rmu_sc0001530.1_g000005 Rmu_sc0001852.1_g000023 Rmu_sc0001852.1_g000024 Rmu_sc0002434.1_g000001 Rmu_sc0002434.1_g000002 Rmu_sc0003043.1_g000016 Rmu_sc0003153.1_g000005 Rmu_sc0011039.1_g000001 Rmu_sc0031822.1_g000001
rosa_roxburghii	Rroxscaffold_2G00095860 Rroxscaffold_2G00095870 Rroxscaffold_2G00109720 Rroxscaffold_2G00139530 Rroxscaffold_2G00139550 Rroxscaffold_2G00139570 Rroxscaffold_2G00139580 Rroxscaffold_2G00139630 Rroxscaffold_2G00139640 Rroxscaffold_4G00328430 Rroxscaffold_4G00328440 Rroxscaffold_4G00328450
rosa_rugosa	Rorug02G0114900 Rorug02G0115000 Rorug02G0115000 Rorug02G0115200 Rorug02G0115300 Rorug02G0115400 Rorug02G0115500 Rorug02G0115600 Rorug02G0115600 Rorug02G0115600 Rorug02G0115700 Rorug02G0320300 Rorug02G0431300 Rorug02G0431300 Rorug06G0028200 Rorug07G0241300
rosa_samantha	Rh2AG163200 Rh2AG163300 Rh2AG163700 Rh2AG163800 Rh2AG163900 Rh2AG164000 Rh2AG373400 Rh2AG492600 Rh2BG170300 Rh2BG170400 Rh2BG170800 Rh2BG170900 Rh2BG171000 Rh2BG171100 Rh2BG171200 Rh2BG377800 Rh2BG505000 Rh2BG505100 Rh2BG505200 Rh2CG170300 Rh2CG170700 Rh2CG479000 Rh2DG169100 Rh2DG169200 Rh2DG169300 Rh2DG516400 Rh7AG391200 Rh7BG376200 Rh7CG410200 Rh7CG411500 Rh7CG412000 Rh7CG412700 Rh7DG388800
rosa_wichuraiana	Rw2G012830 Rw2G012840 Rw2G012870 Rw2G012880 Rw2G012890 Rw2G012900 Rw2G030310 Rw2G040470 Rw2G040480 Rw7G032720 Rw7G032730 Rw7G032750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	321
AfaI	GTAC	2 cut(s)	325, 346
AfiI	CCNNNNNNNGG	2 cut(s)	252, 253
AgsI	TTSAA	3 cut(s)	251, 268, 289
AluBI	AGCT	3 cut(s)	44, 56, 239
AluI	AGCT	3 cut(s)	44, 56, 239
AoxI	GGCC	1 cut(s)	164
ApeKI	GCWGC	1 cut(s)	301
Asp700I	GAANNNNTTC	1 cut(s)	174
BaeI	ACNNNNGTAYC	2 cut(s)	315, 348
BbvI	GCAGC	1 cut(s)	313
BccI	CCATC	3 cut(s)	140, 226, 286
BcgI	CGANNNNNNTGC	2 cut(s)	10, 44
BfaI	CTAG	3 cut(s)	45, 162, 356
BfmI	CTRYAG	1 cut(s)	240
BisI	GCNGC	1 cut(s)	302
BlsI	GCNGC	1 cut(s)	303
BmsI	GCATC	1 cut(s)	143
BsaBI	GATNNNNATC	1 cut(s)	157
BsaJI	CCNNGG	1 cut(s)	316
Bsc4I	CCNNNNNNNGG	2 cut(s)	252, 253
Bse3DI	GCAATG	1 cut(s)	94
Bse8I	GATNNNNATC	1 cut(s)	157
BseDI	CCNNGG	1 cut(s)	316
BseGI	GGATG	4 cut(s)	60, 158, 216, 347
BseJI	GATNNNNATC	1 cut(s)	157
BseLI	CCNNNNNNNGG	2 cut(s)	252, 253
BseMI	GCAATG	1 cut(s)	94
BseMII	CTCAG	1 cut(s)	222
BseXI	GCAGC	1 cut(s)	313
BshFI	GGCC	1 cut(s)	166
BslI	CCNNNNNNNGG	2 cut(s)	252, 253
BsnI	GGCC	1 cut(s)	166
Bsp1407I	TGTACA	1 cut(s)	344
Bsp19I	CCATGG	1 cut(s)	316
BspACI	CCGC	1 cut(s)	321
BspANI	GGCC	1 cut(s)	166
BspCNI	CTCAG	1 cut(s)	223
BsrDI	GCAATG	1 cut(s)	94
BsrGI	TGTACA	1 cut(s)	344
BssECI	CCNNGG	1 cut(s)	316
BssT1I	CCWWGG	1 cut(s)	316
Bst4CI	ACNGT	1 cut(s)	328
BstAUI	TGTACA	1 cut(s)	344
BstDEI	CTNAG	1 cut(s)	231
BstDSI	CCRYGG	1 cut(s)	316
BstF5I	GGATG	4 cut(s)	60, 158, 216, 347
BstNSI	RCATGY	1 cut(s)	192
BstSFI	CTRYAG	1 cut(s)	240
BstV1I	GCAGC	1 cut(s)	313
BsuRI	GGCC	1 cut(s)	166
BtgI	CCRYGG	1 cut(s)	316
BtsCI	GGATG	4 cut(s)	60, 158, 216, 347
Csp6I	GTAC	2 cut(s)	324, 345
CviAII	CATG	5 cut(s)	35, 189, 194, 317, 360
CviQI	GTAC	2 cut(s)	324, 345
DdeI	CTNAG	1 cut(s)	231
Eco130I	CCWWGG	1 cut(s)	316
Eco147I	AGGCCT	1 cut(s)	166
EcoT14I	CCWWGG	1 cut(s)	316
ErhI	CCWWGG	1 cut(s)	316
FaeI	CATG	5 cut(s)	38, 192, 197, 320, 363
FaiI	YATR	8 cut(s)	36, 190, 195, 299, 312, 318, 343, 361
FatI	CATG	5 cut(s)	34, 188, 193, 316, 359
Fnu4HI	GCNGC	1 cut(s)	302
FokI	GGATG	4 cut(s)	47, 165, 223, 334
Fsp4HI	GCNGC	1 cut(s)	302
FspBI	CTAG	3 cut(s)	45, 162, 356
GluI	GCNGC	1 cut(s)	302
HaeIII	GGCC	1 cut(s)	166
Hin1II	CATG	5 cut(s)	38, 192, 197, 320, 363
HinfI	GANTC	2 cut(s)	89, 199
Hpy188I	TCNGA	1 cut(s)	274
Hpy188III	TCNNGA	2 cut(s)	19, 289
HpyAV	CCTTC	2 cut(s)	257, 291
HpyCH4III	ACNGT	1 cut(s)	328
HpyCH4V	TGCA	1 cut(s)	301
HpyF3I	CTNAG	1 cut(s)	231
Hsp92II	CATG	5 cut(s)	38, 192, 197, 320, 363
LmnI	GCTCC	2 cut(s)	53, 104
LpnPI	CCDG	1 cut(s)	180
Lsp1109I	GCAGC	1 cut(s)	313
LweI	GCATC	1 cut(s)	143
MaeI	CTAG	3 cut(s)	45, 162, 356
MnlI	CCTC	2 cut(s)	201, 316
MroXI	GAANNNNTTC	1 cut(s)	174
MseI	TTAA	1 cut(s)	69
MslI	CAYNNNNRTG	1 cut(s)	315
NcoI	CCATGG	1 cut(s)	316
NlaIII	CATG	5 cut(s)	38, 192, 197, 320, 363
NspI	RCATGY	1 cut(s)	192
PceI	AGGCCT	1 cut(s)	166
PdmI	GAANNNNTTC	1 cut(s)	174
PfeI	GAWTC	2 cut(s)	89, 199
PkrI	GCNGC	1 cut(s)	303
RsaI	GTAC	2 cut(s)	325, 346
RsaNI	GTAC	2 cut(s)	324, 345
RseI	CAYNNNNRTG	1 cut(s)	315
SaqAI	TTAA	1 cut(s)	69
SatI	GCNGC	1 cut(s)	302
SetI	ASST	4 cut(s)	46, 58, 241, 283
SfaNI	GCATC	1 cut(s)	143
SfcI	CTRYAG	1 cut(s)	240
SmiMI	CAYNNNNRTG	1 cut(s)	315
SseBI	AGGCCT	1 cut(s)	166
SsiI	CCGC	1 cut(s)	321
SspMI	CTAG	3 cut(s)	45, 162, 356
StuI	AGGCCT	1 cut(s)	166
StyI	CCWWGG	1 cut(s)	316
TaaI	ACNGT	1 cut(s)	328
TaqI	TCGA	1 cut(s)	221
TatI	WGTACW	1 cut(s)	344
TfiI	GAWTC	2 cut(s)	89, 199
Tru1I	TTAA	1 cut(s)	69
Tru9I	TTAA	1 cut(s)	69
TseI	GCWGC	1 cut(s)	301
TspDTI	ATGAA	1 cut(s)	227
XceI	RCATGY	1 cut(s)	192
XcmI	CCANNNNNNNNNTGG	1 cut(s)	200
XmnI	GAANNNNTTC	1 cut(s)	174
XspI	CTAG	3 cut(s)	45, 162, 356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.