Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0000156

Physical Location & Seq

Genomic Coordinates Reverse (-)

8224868 .. 8226972

Gene Structure 2105 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g14700.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGAGTGCCCTTCTGCCTACGTTTTGTTCTGCAACTCCCCATTTTTTCAATATCATTCTCGACAACACTTCTAGAGACATCAAACTTAAAATTCCGAAGAAATTTGTGAAGAAATATGGAGAACATCTCTCAGATTCAGTATGTCTTAAGATCCCAAGTGGTTGTGAATGGGAAGTGGGAGTGACACGCAACGGCAATAAGGTTTGGTTTGAGCAGGGCTGGCCAGCATTTGCTAAATTTTACTCCCTAGACTACGGTGTCTTCTTACTATTTAGATATGAAGGGAATTCTAAGTTCCAGGTTTGCATATTTGATACTAGTGCCACAGAGATCGCCTATCCTATCCGTATAGAAGAACCCGATAACATTAATTGTGAAGATATCGATGATGACAACTCTGTTGAAGTCCTGGATGATTTTTCACATCCTTATTGCCCGAAAACAAGGGCGAAATCTCCATTACCATCTCCTAGGCCTCACAAGAGAAGAAAAATAAGTTCAAATAGTGAGGGAAAAATTCAAGGGAAAACTGATATTATCGGAAAAGAACATGGTGGAGGCTCGTCTAGCACTCAAAATGTTCGGAAAGAAACACCTAAGGTATGTGGGATGAAGCATTCATCGACAGCTAAAACAAAAACTACAGCTCTTGAAAGAGCTGCTGGTTTCACCTCTGAGAAACCTTTTTCAATAGTCACCATGCATCCTTCATATGTCCAACGTAATACTATGAATCTACGAGGCAGTTTTGTCAAGAATTTTGCTACACAGCACCAACTTGTGAAGCTTCAGGTGGGAGATAGATCTTGGCCTGTGAAGTTGAATATATACCATAAAGGTTCATCGATAGCTAAATTATCTGGCGGATGGCCTGCATTTTGCCAAGAAAATAGTTTAAGTGATGGAGATGTTTGCATATTTGAGCTCATACAAGTGAATGACGTTGTACTGAAAGTTCACATTTTTAGATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

325

Amino Acids

36.42

Weight (kDa)

8.97

Isoelectric Point (pI)

38.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	23 - 106	3e-15	B3 DNA binding domain
B3	PF02362	230 - 323	4.7e-15	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000156)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49475 AT3G18960 AT3G18960 AT3G18960 AT4G01580
fragaria_vesca	FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14670 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14690 FvH4_1g14700 FvH4_1g29250 FvH4_6g29400 FvH4_6g38681 FvH4_6g38690 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_7g02010
malus_domestica	MD00G1020600.v1.1 MD00G1022000.v1.1 MD00G1022100.v1.1 MD02G1159700.v1.1 MD02G1159800.v1.1 MD02G1159900.v1.1 MD02G1160000.v1.1 MD02G1160300.v1.1 MD15G1274100.v1.1 MD15G1274200.v1.1 MD15G1274400.v1.1 MD15G1302000.v1.1
prunus_persica	Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.3G083400_v2.0.a1 Prupe.6G229600_v2.0.a1 Prupe.7G039600_v2.0.a1 Prupe.7G044500_v2.0.a1 Prupe.7G044800_v2.0.a1 Prupe.7G143100_v2.0.a1 Prupe.7G143500_v2.0.a1 Prupe.7G143600_v2.0.a1 Prupe.7G143700_v2.0.a1 Prupe.7G143800_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.8G072800_v2.0.a1 Prupe.8G072800_v2.0.a1
pyrus_communis	pycom02g12620 pycom02g12630 pycom15g23750 pycom15g26490 pycom17g21160
rosa_chinensis	RchiOBHm_Chr2g0103421 RchiOBHm_Chr2g0103431 RchiOBHm_Chr2g0103441 RchiOBHm_Chr2g0103491 RchiOBHm_Chr2g0103501 RchiOBHm_Chr2g0103521 RchiOBHm_Chr2g0103541 RchiOBHm_Chr2g0103551 RchiOBHm_Chr2g0103561 RchiOBHm_Chr2g0134821 RchiOBHm_Chr2g0152161 RchiOBHm_Chr2g0152181 RchiOBHm_Chr7g0227261 RchiOBHm_Chr7g0227351 RchiOBHm_Chr7g0227431
rosa_laevigata	RLG00000001649 RLG00000001653 RLG00000001659 RLG00000017235 RLG00000017236 RLG00000017240 RLG00000017241 RLG00000017242 RLG00000017243 RLG00000017244 RLG00000017349 RLG00000019424 RLG00000020614 RLG00000020615
rosa_multiflora	Rmu_co8247875.1_g000001 Rmu_co8429551.1_g000001 Rmu_sc0000173.1_g000009 Rmu_sc0000718.1_g000004 Rmu_sc0001530.1_g000001 Rmu_sc0001530.1_g000002 Rmu_sc0001530.1_g000004 Rmu_sc0001530.1_g000005 Rmu_sc0001852.1_g000023 Rmu_sc0001852.1_g000024 Rmu_sc0002434.1_g000001 Rmu_sc0002434.1_g000002 Rmu_sc0003043.1_g000016 Rmu_sc0003153.1_g000005 Rmu_sc0011039.1_g000001 Rmu_sc0031822.1_g000001
rosa_roxburghii	Rroxscaffold_2G00095860 Rroxscaffold_2G00095870 Rroxscaffold_2G00109720 Rroxscaffold_2G00139530 Rroxscaffold_2G00139550 Rroxscaffold_2G00139570 Rroxscaffold_2G00139580 Rroxscaffold_2G00139630 Rroxscaffold_2G00139640 Rroxscaffold_4G00328430 Rroxscaffold_4G00328440 Rroxscaffold_4G00328450
rosa_rugosa	Rorug02G0114900 Rorug02G0115000 Rorug02G0115000 Rorug02G0115200 Rorug02G0115300 Rorug02G0115400 Rorug02G0115500 Rorug02G0115600 Rorug02G0115600 Rorug02G0115600 Rorug02G0115700 Rorug02G0320300 Rorug02G0431300 Rorug02G0431300 Rorug06G0028200 Rorug07G0241300
rosa_samantha	Rh2AG163200 Rh2AG163300 Rh2AG163700 Rh2AG163800 Rh2AG163900 Rh2AG164000 Rh2AG373400 Rh2AG492600 Rh2BG170300 Rh2BG170400 Rh2BG170800 Rh2BG170900 Rh2BG171000 Rh2BG171100 Rh2BG171200 Rh2BG377800 Rh2BG505000 Rh2BG505100 Rh2BG505200 Rh2CG170300 Rh2CG170700 Rh2CG479000 Rh2DG169100 Rh2DG169200 Rh2DG169300 Rh2DG516400 Rh7AG391200 Rh7BG376200 Rh7CG410200 Rh7CG411500 Rh7CG412000 Rh7CG412700 Rh7DG388800
rosa_wichuraiana	Rw2G012830 Rw2G012840 Rw2G012870 Rw2G012880 Rw2G012890 Rw2G012900 Rw2G030310 Rw2G040470 Rw2G040480 Rw7G032720 Rw7G032730 Rw7G032750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	257
AciI	CCGC	1 cut(s)	864
AclWI	GGATC	1 cut(s)	145
AcoI	YGGCCR	1 cut(s)	221
AcsI	RAATTY	6 cut(s)	90, 101, 236, 286, 516, 757
AcuI	CTGAAG	1 cut(s)	773
AfaI	GTAC	1 cut(s)	948
AflII	CTTAAG	1 cut(s)	146
AgsI	TTSAA	7 cut(s)	49, 404, 501, 521, 653, 690, 823
AhlI	ACTAGT	1 cut(s)	317
AjnI	CCWGG	2 cut(s)	297, 408
AluBI	AGCT	6 cut(s)	629, 647, 659, 787, 851, 925
AluI	AGCT	6 cut(s)	629, 647, 659, 787, 851, 925
Alw21I	GWGCWC	1 cut(s)	927
Alw26I	GTCTC	1 cut(s)	69
AlwI	GGATC	1 cut(s)	145
AoxI	GGCC	4 cut(s)	221, 473, 809, 869
ApeKI	GCWGC	1 cut(s)	659
ApoI	RAATTY	6 cut(s)	90, 101, 236, 286, 516, 757
AseI	ATTAAT	1 cut(s)	369
AspA2I	CCTAGG	1 cut(s)	470
AsuHPI	GGTGA	2 cut(s)	661, 688
AvrII	CCTAGG	1 cut(s)	470
AxyI	CCTNAGG	1 cut(s)	597
BaeGI	GKGCMC	1 cut(s)	10
BalI	TGGCCA	1 cut(s)	223
BanII	GRGCYC	1 cut(s)	927
BbsI	GAAGAC	1 cut(s)	253
Bbv12I	GWGCWC	1 cut(s)	927
BbvI	GCAGC	1 cut(s)	646
BccI	CCATC	3 cut(s)	472, 861, 896
BceAI	ACGGC	1 cut(s)	208
BciT130I	CCWGG	2 cut(s)	299, 410
BcoDI	GTCTC	1 cut(s)	69
BcuI	ACTAGT	1 cut(s)	317
BfaI	CTAG	5 cut(s)	72, 248, 318, 471, 567
BfmI	CTRYAG	1 cut(s)	642
BfrI	CTTAAG	1 cut(s)	146
BglII	AGATCT	1 cut(s)	803
BisI	GCNGC	1 cut(s)	660
BlnI	CCTAGG	1 cut(s)	470
BlsI	GCNGC	1 cut(s)	661
Bme1390I	CCNGG	2 cut(s)	299, 410
BmrFI	CCNGG	2 cut(s)	299, 410
BmsI	GCATC	1 cut(s)	712
BpiI	GAAGAC	1 cut(s)	253
BplI	GAGNNNNNCTC	2 cut(s)	111, 143
Bsa29I	ATCGAT	2 cut(s)	384, 845
BsaJI	CCNNGG	1 cut(s)	470
Bse21I	CCTNAGG	1 cut(s)	597
BseBI	CCWGG	2 cut(s)	299, 410
BseCI	ATCGAT	2 cut(s)	384, 845
BseDI	CCNNGG	1 cut(s)	470
BseGI	GGATG	5 cut(s)	418, 424, 615, 703, 872
BseMII	CTCAG	2 cut(s)	144, 666
BseSI	GKGCMC	1 cut(s)	10
BseXI	GCAGC	1 cut(s)	646
BshFI	GGCC	4 cut(s)	223, 475, 811, 871
BshVI	ATCGAT	2 cut(s)	384, 845
BsiHKAI	GWGCWC	1 cut(s)	927
BsmAI	GTCTC	1 cut(s)	69
BsmI	GAATGC	1 cut(s)	616
BsnI	GGCC	4 cut(s)	223, 475, 811, 871
Bsp1286I	GDGCHC	2 cut(s)	10, 927
Bsp143I	GATC	3 cut(s)	150, 330, 803
BspACI	CCGC	1 cut(s)	864
BspANI	GGCC	4 cut(s)	223, 475, 811, 871
BspCNI	CTCAG	2 cut(s)	143, 667
BspDI	ATCGAT	2 cut(s)	384, 845
BspPI	GGATC	1 cut(s)	145
BspTI	CTTAAG	1 cut(s)	146
BssECI	CCNNGG	1 cut(s)	470
BssMI	GATC	3 cut(s)	150, 330, 803
BssT1I	CCWWGG	1 cut(s)	470
Bst2UI	CCWGG	2 cut(s)	299, 410
Bst4CI	ACNGT	1 cut(s)	257
BstAFI	CTTAAG	1 cut(s)	146
BstC8I	GCNNGC	3 cut(s)	221, 225, 873
BstDEI	CTNAG	4 cut(s)	130, 291, 597, 675
BstF5I	GGATG	5 cut(s)	418, 424, 615, 703, 872
BstKTI	GATC	3 cut(s)	153, 333, 806
BstMAI	GTCTC	1 cut(s)	69
BstMBI	GATC	3 cut(s)	150, 330, 803
BstMWI	GCNNNNNNNGC	2 cut(s)	220, 567
BstNI	CCWGG	2 cut(s)	299, 410
BstSCI	CCNGG	2 cut(s)	297, 408
BstSFI	CTRYAG	1 cut(s)	642
BstSLI	GKGCMC	1 cut(s)	10
BstV1I	GCAGC	1 cut(s)	646
BstV2I	GAAGAC	1 cut(s)	253
BstX2I	RGATCY	2 cut(s)	150, 803
BstYI	RGATCY	2 cut(s)	150, 803
Bsu15I	ATCGAT	2 cut(s)	384, 845
Bsu36I	CCTNAGG	1 cut(s)	597
BsuRI	GGCC	4 cut(s)	223, 475, 811, 871
BsuTUI	ATCGAT	2 cut(s)	384, 845
BtsCI	GGATG	5 cut(s)	418, 424, 615, 703, 872
Cac8I	GCNNGC	3 cut(s)	221, 225, 873
ClaI	ATCGAT	2 cut(s)	384, 845
Csp6I	GTAC	1 cut(s)	947
CviAII	CATG	2 cut(s)	551, 700
CviQI	GTAC	1 cut(s)	947
DdeI	CTNAG	4 cut(s)	130, 291, 597, 675
DpnI	GATC	3 cut(s)	152, 332, 805
DpnII	GATC	3 cut(s)	150, 330, 803
DrdI	GACNNNNNNGTC	1 cut(s)	257
DseDI	GACNNNNNNGTC	1 cut(s)	257
EaeI	YGGCCR	1 cut(s)	221
EciI	GGCGGA	1 cut(s)	879
Ecl136II	GAGCTC	1 cut(s)	925
Eco130I	CCWWGG	1 cut(s)	470
Eco147I	AGGCCT	1 cut(s)	475
Eco24I	GRGCYC	1 cut(s)	927
Eco32I	GATATC	1 cut(s)	382
Eco53kI	GAGCTC	1 cut(s)	925
Eco57I	CTGAAG	1 cut(s)	773
Eco81I	CCTNAGG	1 cut(s)	597
EcoICRI	GAGCTC	1 cut(s)	925
EcoRI	GAATTC	1 cut(s)	286
EcoRII	CCWGG	2 cut(s)	297, 408
EcoRV	GATATC	1 cut(s)	382
EcoT14I	CCWWGG	1 cut(s)	470
EcoT22I	ATGCAT	1 cut(s)	705
EcoT38I	GRGCYC	1 cut(s)	927
ErhI	CCWWGG	1 cut(s)	470
FaeI	CATG	2 cut(s)	554, 703
FatI	CATG	2 cut(s)	550, 699
FauNDI	CATATG	1 cut(s)	712
Fnu4HI	GCNGC	1 cut(s)	660
FokI	GGATG	5 cut(s)	411, 425, 622, 690, 879
FriOI	GRGCYC	1 cut(s)	927
Fsp4HI	GCNGC	1 cut(s)	660
FspBI	CTAG	5 cut(s)	72, 248, 318, 471, 567
GluI	GCNGC	1 cut(s)	660
HaeIII	GGCC	4 cut(s)	223, 475, 811, 871
Hin1II	CATG	2 cut(s)	554, 703
HindIII	AAGCTT	1 cut(s)	785
HinfI	GANTC	2 cut(s)	134, 733
HphI	GGTGA	2 cut(s)	661, 688
Hpy166II	GTNNAC	1 cut(s)	958
Hpy188I	TCNGA	5 cut(s)	96, 133, 542, 585, 676
Hpy188III	TCNNGA	4 cut(s)	59, 72, 650, 754
Hpy8I	GTNNAC	1 cut(s)	958
HpyAV	CCTTC	3 cut(s)	20, 275, 717
HpyCH4III	ACNGT	1 cut(s)	257
HpyCH4IV	ACGT	3 cut(s)	20, 721, 942
HpyCH4V	TGCA	5 cut(s)	32, 306, 703, 875, 915
HpyF10VI	GCNNNNNNNGC	2 cut(s)	220, 567
HpyF3I	CTNAG	4 cut(s)	130, 291, 597, 675
HpySE526I	ACGT	3 cut(s)	20, 721, 942
Hsp92II	CATG	2 cut(s)	554, 703
Kzo9I	GATC	3 cut(s)	150, 330, 803
Lsp1109I	GCAGC	1 cut(s)	646
LweI	GCATC	1 cut(s)	712
MaeI	CTAG	5 cut(s)	72, 248, 318, 471, 567
MaeII	ACGT	3 cut(s)	20, 721, 942
MaeIII	GTNAC	2 cut(s)	181, 694
MalI	GATC	3 cut(s)	152, 332, 805
MboI	GATC	3 cut(s)	150, 330, 803
MboII	GAAGA	6 cut(s)	109, 121, 253, 365, 389, 498
MflI	RGATCY	2 cut(s)	150, 803
MhlI	GDGCHC	2 cut(s)	10, 927
MlsI	TGGCCA	1 cut(s)	223
MluCI	AATT	8 cut(s)	90, 101, 236, 286, 370, 516, 757, 854
MluNI	TGGCCA	1 cut(s)	223
MmeI	TCCRAC	1 cut(s)	742
MnlI	CCTC	5 cut(s)	486, 502, 551, 682, 734
Mox20I	TGGCCA	1 cut(s)	223
Mph1103I	ATGCAT	1 cut(s)	705
MscI	TGGCCA	1 cut(s)	223
MseI	TTAA	4 cut(s)	87, 147, 369, 896
MslI	CAYNNNNRTG	1 cut(s)	932
Msp20I	TGGCCA	1 cut(s)	223
MspCI	CTTAAG	1 cut(s)	146
MspR9I	CCNGG	2 cut(s)	299, 410
Mva1269I	GAATGC	1 cut(s)	616
MvaI	CCWGG	2 cut(s)	299, 410
MwoI	GCNNNNNNNGC	2 cut(s)	220, 567
NdeI	CATATG	1 cut(s)	712
NdeII	GATC	3 cut(s)	150, 330, 803
NlaIII	CATG	2 cut(s)	554, 703
NmuCI	GTSAC	2 cut(s)	181, 694
NsiI	ATGCAT	1 cut(s)	705
PceI	AGGCCT	1 cut(s)	475
PctI	GAATGC	1 cut(s)	616
PfeI	GAWTC	2 cut(s)	134, 733
PfoI	TCCNGGA	1 cut(s)	408
PkrI	GCNGC	1 cut(s)	661
PshBI	ATTAAT	1 cut(s)	369
Psp124BI	GAGCTC	1 cut(s)	927
Psp6I	CCWGG	2 cut(s)	297, 408
PspGI	CCWGG	2 cut(s)	297, 408
PsrI	GAACNNNNNNTAC	2 cut(s)	939, 971
PsuI	RGATCY	2 cut(s)	150, 803
RsaI	GTAC	1 cut(s)	948
RsaNI	GTAC	1 cut(s)	947
RseI	CAYNNNNRTG	1 cut(s)	932
SacI	GAGCTC	1 cut(s)	927
SaqAI	TTAA	4 cut(s)	87, 147, 369, 896
SatI	GCNGC	1 cut(s)	660
Sau3AI	GATC	3 cut(s)	150, 330, 803
ScrFI	CCNGG	2 cut(s)	299, 410
SduI	GDGCHC	2 cut(s)	10, 927
SfaNI	GCATC	1 cut(s)	712
SfcI	CTRYAG	1 cut(s)	642
SmiMI	CAYNNNNRTG	1 cut(s)	932
SmlI	CTYRAG	1 cut(s)	146
SmoI	CTYRAG	1 cut(s)	146
SpeI	ACTAGT	1 cut(s)	317
Sse9I	AATT	8 cut(s)	90, 101, 236, 286, 370, 516, 757, 854
SseBI	AGGCCT	1 cut(s)	475
SsiI	CCGC	1 cut(s)	864
SspMI	CTAG	5 cut(s)	72, 248, 318, 471, 567
SstI	GAGCTC	1 cut(s)	927
StuI	AGGCCT	1 cut(s)	475
StyD4I	CCNGG	2 cut(s)	297, 408
StyI	CCWWGG	1 cut(s)	470
TaaI	ACNGT	1 cut(s)	257
TaiI	ACGT	3 cut(s)	23, 724, 945
TaqI	TCGA	4 cut(s)	60, 384, 623, 845
TasI	AATT	8 cut(s)	90, 101, 236, 286, 370, 516, 757, 854
TatI	WGTACW	1 cut(s)	946
TfiI	GAWTC	2 cut(s)	134, 733
Tru1I	TTAA	4 cut(s)	87, 147, 369, 896
Tru9I	TTAA	4 cut(s)	87, 147, 369, 896
TseFI	GTSAC	2 cut(s)	181, 694
TseI	GCWGC	1 cut(s)	659
Tsp45I	GTSAC	2 cut(s)	181, 694
TspDTI	ATGAA	6 cut(s)	294, 609, 626, 699, 746, 831
TspGWI	ACGGA	1 cut(s)	335
Vha464I	CTTAAG	1 cut(s)	146
VspI	ATTAAT	1 cut(s)	369
XapI	RAATTY	6 cut(s)	90, 101, 236, 286, 516, 757
XbaI	TCTAGA	1 cut(s)	71
XmaJI	CCTAGG	1 cut(s)	470
XspI	CTAG	5 cut(s)	72, 248, 318, 471, 567
Zsp2I	ATGCAT	1 cut(s)	705

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.