Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000156

Physical Location & Seq

Genomic Coordinates Forward (+)

9847200 .. 9847586

Gene Structure 387 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0115500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGCCGTGTCCTTGAATCTAGATTTCCCTGCGGTCATGACGTTGAGGTATGGAAGATTATACCATAATAAACTAAGTAATGTCCGTGAGATCGTACTGTATCCAGTACGCCGCGTAGATCTGCTAAATAATAAAGATGAACCTTTTGATGATGTCATTTTCTATCAAGGAAAGTTCTATGCTGTCTCCAAGTATGGAAGAGCTATAGTGCTGCATTCTTCCTCGACGAATTGGGCAGATATTGCGTCTCCGGTATTCCCTTTGGGTTTTGACAAGACGAAGAAGAAGAATTATTGGGTGCAATCATTGGGGGAGCTGCTTGTAGTTGAGAGAGATGGGTGTGCATTTGTGGGAAAAGGCCGGTGGCTGTGTAGACTATATGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

128

Amino Acids

14.75

Weight (kDa)

9.42

Isoelectric Point (pI)

47.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	43 - 111	2.7e-09	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000156)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49475 AT3G18960 AT3G18960 AT3G18960 AT4G01580
fragaria_vesca	FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14670 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14690 FvH4_1g14700 FvH4_1g29250 FvH4_6g29400 FvH4_6g38681 FvH4_6g38690 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_7g02010
malus_domestica	MD00G1020600.v1.1 MD00G1022000.v1.1 MD00G1022100.v1.1 MD02G1159700.v1.1 MD02G1159800.v1.1 MD02G1159900.v1.1 MD02G1160000.v1.1 MD02G1160300.v1.1 MD15G1274100.v1.1 MD15G1274200.v1.1 MD15G1274400.v1.1 MD15G1302000.v1.1
prunus_persica	Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.3G083400_v2.0.a1 Prupe.6G229600_v2.0.a1 Prupe.7G039600_v2.0.a1 Prupe.7G044500_v2.0.a1 Prupe.7G044800_v2.0.a1 Prupe.7G143100_v2.0.a1 Prupe.7G143500_v2.0.a1 Prupe.7G143600_v2.0.a1 Prupe.7G143700_v2.0.a1 Prupe.7G143800_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.8G072800_v2.0.a1 Prupe.8G072800_v2.0.a1
pyrus_communis	pycom02g12620 pycom02g12630 pycom15g23750 pycom15g26490 pycom17g21160
rosa_chinensis	RchiOBHm_Chr2g0103421 RchiOBHm_Chr2g0103431 RchiOBHm_Chr2g0103441 RchiOBHm_Chr2g0103491 RchiOBHm_Chr2g0103501 RchiOBHm_Chr2g0103521 RchiOBHm_Chr2g0103541 RchiOBHm_Chr2g0103551 RchiOBHm_Chr2g0103561 RchiOBHm_Chr2g0134821 RchiOBHm_Chr2g0152161 RchiOBHm_Chr2g0152181 RchiOBHm_Chr7g0227261 RchiOBHm_Chr7g0227351 RchiOBHm_Chr7g0227431
rosa_laevigata	RLG00000001649 RLG00000001653 RLG00000001659 RLG00000017235 RLG00000017236 RLG00000017240 RLG00000017241 RLG00000017242 RLG00000017243 RLG00000017244 RLG00000017349 RLG00000019424 RLG00000020614 RLG00000020615
rosa_multiflora	Rmu_co8247875.1_g000001 Rmu_co8429551.1_g000001 Rmu_sc0000173.1_g000009 Rmu_sc0000718.1_g000004 Rmu_sc0001530.1_g000001 Rmu_sc0001530.1_g000002 Rmu_sc0001530.1_g000004 Rmu_sc0001530.1_g000005 Rmu_sc0001852.1_g000023 Rmu_sc0001852.1_g000024 Rmu_sc0002434.1_g000001 Rmu_sc0002434.1_g000002 Rmu_sc0003043.1_g000016 Rmu_sc0003153.1_g000005 Rmu_sc0011039.1_g000001 Rmu_sc0031822.1_g000001
rosa_roxburghii	Rroxscaffold_2G00095860 Rroxscaffold_2G00095870 Rroxscaffold_2G00109720 Rroxscaffold_2G00139530 Rroxscaffold_2G00139550 Rroxscaffold_2G00139570 Rroxscaffold_2G00139580 Rroxscaffold_2G00139630 Rroxscaffold_2G00139640 Rroxscaffold_4G00328430 Rroxscaffold_4G00328440 Rroxscaffold_4G00328450
rosa_rugosa	Rorug02G0114900 Rorug02G0115000 Rorug02G0115000 Rorug02G0115200 Rorug02G0115300 Rorug02G0115400 Rorug02G0115500 Rorug02G0115600 Rorug02G0115600 Rorug02G0115600 Rorug02G0115700 Rorug02G0320300 Rorug02G0431300 Rorug02G0431300 Rorug06G0028200 Rorug07G0241300
rosa_samantha	Rh2AG163200 Rh2AG163300 Rh2AG163700 Rh2AG163800 Rh2AG163900 Rh2AG164000 Rh2AG373400 Rh2AG492600 Rh2BG170300 Rh2BG170400 Rh2BG170800 Rh2BG170900 Rh2BG171000 Rh2BG171100 Rh2BG171200 Rh2BG377800 Rh2BG505000 Rh2BG505100 Rh2BG505200 Rh2CG170300 Rh2CG170700 Rh2CG479000 Rh2DG169100 Rh2DG169200 Rh2DG169300 Rh2DG516400 Rh7AG391200 Rh7BG376200 Rh7CG410200 Rh7CG411500 Rh7CG412000 Rh7CG412700 Rh7DG388800
rosa_wichuraiana	Rw2G012830 Rw2G012840 Rw2G012870 Rw2G012880 Rw2G012890 Rw2G012900 Rw2G030310 Rw2G040470 Rw2G040480 Rw7G032720 Rw7G032730 Rw7G032750

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	373
AccII	CGCG	1 cut(s)	114
AciI	CCGC	2 cut(s)	32, 112
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	2 cut(s)	96, 108
AgsI	TTSAA	1 cut(s)	16
AluBI	AGCT	2 cut(s)	203, 316
AluI	AGCT	2 cut(s)	203, 316
Alw26I	GTCTC	2 cut(s)	190, 252
AoxI	GGCC	2 cut(s)	3, 358
ApeKI	GCWGC	2 cut(s)	211, 316
BbvI	GCAGC	2 cut(s)	198, 303
BccI	CCATC	1 cut(s)	329
BciVI	GTATCC	1 cut(s)	111
BcoDI	GTCTC	2 cut(s)	190, 252
BfaI	CTAG	1 cut(s)	20
BfmI	CTRYAG	1 cut(s)	204
BfuI	GTATCC	1 cut(s)	111
BglII	AGATCT	1 cut(s)	118
BisI	GCNGC	3 cut(s)	112, 212, 317
BlsI	GCNGC	3 cut(s)	113, 213, 318
BsaWI	WCCGGW	1 cut(s)	250
Bse118I	RCCGGY	1 cut(s)	360
Bse1I	ACTGG	1 cut(s)	104
BseNI	ACTGG	1 cut(s)	104
BseXI	GCAGC	2 cut(s)	198, 303
Bsh1236I	CGCG	1 cut(s)	114
BshFI	GGCC	2 cut(s)	5, 360
BsiSI	CCGG	2 cut(s)	251, 361
BsmAI	GTCTC	2 cut(s)	190, 252
BsmBI	CGTCTC	1 cut(s)	252
BsmI	GAATGC	1 cut(s)	214
BsnI	GGCC	2 cut(s)	5, 360
Bsp143I	GATC	2 cut(s)	90, 118
BspACI	CCGC	2 cut(s)	32, 112
BspANI	GGCC	2 cut(s)	5, 360
BspFNI	CGCG	1 cut(s)	114
BspHI	TCATGA	1 cut(s)	36
BspQI	GCTCTTC	1 cut(s)	193
BsrFI	RCCGGY	1 cut(s)	360
BsrI	ACTGG	1 cut(s)	104
BssAI	RCCGGY	1 cut(s)	360
BssMI	GATC	2 cut(s)	90, 118
Bst4CI	ACNGT	1 cut(s)	99
Bst6I	CTCTTC	1 cut(s)	193
BstAPI	GCANNNNNTGC	1 cut(s)	242
BstDEI	CTNAG	1 cut(s)	74
BstFNI	CGCG	1 cut(s)	114
BstKTI	GATC	2 cut(s)	93, 121
BstMAI	GTCTC	2 cut(s)	190, 252
BstMBI	GATC	2 cut(s)	90, 118
BstMWI	GCNNNNNNNGC	1 cut(s)	242
BstSFI	CTRYAG	1 cut(s)	204
BstUI	CGCG	1 cut(s)	114
BstV1I	GCAGC	2 cut(s)	198, 303
BstX2I	RGATCY	1 cut(s)	118
BstYI	RGATCY	1 cut(s)	118
BsuI	GTATCC	1 cut(s)	111
BsuRI	GGCC	2 cut(s)	5, 360
CciI	TCATGA	1 cut(s)	36
Cfr10I	RCCGGY	1 cut(s)	360
CseI	GACGC	1 cut(s)	234
Csp6I	GTAC	2 cut(s)	95, 107
CviAII	CATG	1 cut(s)	37
CviJI	RGCY	5 cut(s)	5, 203, 316, 360, 367
CviKI_1	RGCY	5 cut(s)	5, 203, 316, 360, 367
CviQI	GTAC	2 cut(s)	95, 107
DdeI	CTNAG	1 cut(s)	74
DpnI	GATC	2 cut(s)	92, 120
DpnII	GATC	2 cut(s)	90, 118
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	193
EarI	CTCTTC	1 cut(s)	193
Esp3I	CGTCTC	1 cut(s)	252
FaeI	CATG	1 cut(s)	40
FaiI	YATR	9 cut(s)	38, 51, 61, 66, 180, 195, 206, 379, 381
FatI	CATG	1 cut(s)	36
FblI	GTMKAC	1 cut(s)	373
Fnu4HI	GCNGC	3 cut(s)	112, 212, 317
Fsp4HI	GCNGC	3 cut(s)	112, 212, 317
FspBI	CTAG	1 cut(s)	20
GluI	GCNGC	3 cut(s)	112, 212, 317
HaeIII	GGCC	2 cut(s)	5, 360
HapII	CCGG	2 cut(s)	251, 361
HgaI	GACGC	1 cut(s)	234
Hin1II	CATG	1 cut(s)	40
HinfI	GANTC	1 cut(s)	16
HpaII	CCGG	2 cut(s)	251, 361
Hpy166II	GTNNAC	1 cut(s)	374
Hpy188III	TCNNGA	2 cut(s)	20, 37
Hpy8I	GTNNAC	1 cut(s)	374
Hpy99I	CGWCG	1 cut(s)	229
HpyCH4III	ACNGT	1 cut(s)	99
HpyCH4IV	ACGT	1 cut(s)	41
HpyCH4V	TGCA	3 cut(s)	214, 301, 344
HpyF10VI	GCNNNNNNNGC	1 cut(s)	242
HpyF3I	CTNAG	1 cut(s)	74
HpySE526I	ACGT	1 cut(s)	41
Hsp92II	CATG	1 cut(s)	40
Kzo9I	GATC	2 cut(s)	90, 118
LguI	GCTCTTC	1 cut(s)	193
LmnI	GCTCC	1 cut(s)	313
LpnPI	CCDG	4 cut(s)	42, 117, 264, 374
Lsp1109I	GCAGC	2 cut(s)	198, 303
MaeI	CTAG	1 cut(s)	20
MaeII	ACGT	1 cut(s)	41
MalI	GATC	2 cut(s)	92, 120
MboI	GATC	2 cut(s)	90, 118
MboII	GAAGA	6 cut(s)	66, 210, 210, 292, 295, 298
MflI	RGATCY	1 cut(s)	118
MluCI	AATT	2 cut(s)	229, 289
MnlI	CCTC	2 cut(s)	39, 232
MseI	TTAA	1 cut(s)	385
MspI	CCGG	2 cut(s)	251, 361
Mva1269I	GAATGC	1 cut(s)	214
MvnI	CGCG	1 cut(s)	114
MwoI	GCNNNNNNNGC	1 cut(s)	242
NdeII	GATC	2 cut(s)	90, 118
NlaIII	CATG	1 cut(s)	40
PagI	TCATGA	1 cut(s)	36
PciSI	GCTCTTC	1 cut(s)	193
PctI	GAATGC	1 cut(s)	214
PfeI	GAWTC	1 cut(s)	16
PkrI	GCNGC	3 cut(s)	113, 213, 318
PsuI	RGATCY	1 cut(s)	118
RsaI	GTAC	2 cut(s)	96, 108
RsaNI	GTAC	2 cut(s)	95, 107
SapI	GCTCTTC	1 cut(s)	193
SaqAI	TTAA	1 cut(s)	385
SatI	GCNGC	3 cut(s)	112, 212, 317
Sau3AI	GATC	2 cut(s)	90, 118
SetI	ASST	5 cut(s)	44, 50, 145, 205, 318
SfcI	CTRYAG	1 cut(s)	204
Sse9I	AATT	2 cut(s)	229, 289
SsiI	CCGC	2 cut(s)	32, 112
SspMI	CTAG	1 cut(s)	20
TaaI	ACNGT	1 cut(s)	99
TaiI	ACGT	1 cut(s)	44
TaqI	TCGA	1 cut(s)	224
TasI	AATT	2 cut(s)	229, 289
TauI	GCSGC	1 cut(s)	114
TfiI	GAWTC	1 cut(s)	16
Tru1I	TTAA	1 cut(s)	385
Tru9I	TTAA	1 cut(s)	385
TseI	GCWGC	2 cut(s)	211, 316
TspDTI	ATGAA	1 cut(s)	153
TspGWI	ACGGA	1 cut(s)	74
XbaI	TCTAGA	1 cut(s)	19
XmiI	GTMKAC	1 cut(s)	373
XspI	CTAG	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.