Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000156

Physical Location & Seq

Genomic Coordinates Forward (+)

71050359 .. 71065071

Gene Structure 14713 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG505100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGAAGGGTTGGTCACCTTTTGTGAGGGACAATAATTTGAAAGTCGGTGATGTGTGTATCTTTACACTGATTAACTGCACTGAATTAGTATTTGATGTTGTCTTTTCCCCCACTGAAGAGTCTGCAGAGCGCCACTTGTCAACAGGCCATGGCAGAGGAGCAGCTGTTCAAGTCCGAGAAATGAAACGCCCCCTAGTTGAAGTTGAATATGAATGCGGCATGAATTGTGAAATTGGCAAGAACAAAATGTCAAATATTAGTGGGCAGGTTACTCAAAGGCCTTCTTCATCTTTGAGGACAGCAAGGGTTAATCTTGAAGCTGCAAGCAAGTTTTCATCAAATAATCCCTTCTTCAAAGTCACCCTGGGGTCGGGCCATACTGTGAAAGTTCCGAACAAATTTGTGATGAAATATAGGAAAGATCTATTAAATTCAGTTTATCTAAAGCTTCCGAGTGGTTCTGAATGGGAAGTGGAACTGACAAGATGCAAAGATAAGATTTGGTTTGAGAAGGGTTGGCCAGAGTTCTCTATGTTTTGTTCACTAGACTACGGGAGTTTCCTGGTTTTTCAATATGAAGGGAATTCTCATTTCCATGTTTGCATATTTGATATGAGTGCCACCGAGATTGATTATCCTATTACAATGCCCAAGATTGAAGAAGCCGTTGAAGATGATGATTTATCTATTGAAATCTTGGAGGATTTTCAACCCAGCCCCAAAGCAAGAATGCAGTCACCATTACCATGTCCTCCTTACAAGAAAATGAGAACAAGTTTAAGCAGTAATGCAAACATGAATTTTGATAGGGAGAACACTCAACCTTGTGACATGCTTGAGAAGCCAATCACAAAGGAGGATTCACACTGCACTAAATGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

293

Amino Acids

33.38

Weight (kDa)

5.78

Isoelectric Point (pI)

49.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	2 - 33	2e-06	B3 DNA binding domain
B3	PF02362	122 - 204	1.7e-12	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000156)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49475 AT3G18960 AT3G18960 AT3G18960 AT4G01580
fragaria_vesca	FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14670 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14690 FvH4_1g14700 FvH4_1g29250 FvH4_6g29400 FvH4_6g38681 FvH4_6g38690 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_7g02010
malus_domestica	MD00G1020600.v1.1 MD00G1022000.v1.1 MD00G1022100.v1.1 MD02G1159700.v1.1 MD02G1159800.v1.1 MD02G1159900.v1.1 MD02G1160000.v1.1 MD02G1160300.v1.1 MD15G1274100.v1.1 MD15G1274200.v1.1 MD15G1274400.v1.1 MD15G1302000.v1.1
prunus_persica	Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.3G083400_v2.0.a1 Prupe.6G229600_v2.0.a1 Prupe.7G039600_v2.0.a1 Prupe.7G044500_v2.0.a1 Prupe.7G044800_v2.0.a1 Prupe.7G143100_v2.0.a1 Prupe.7G143500_v2.0.a1 Prupe.7G143600_v2.0.a1 Prupe.7G143700_v2.0.a1 Prupe.7G143800_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.8G072800_v2.0.a1 Prupe.8G072800_v2.0.a1
pyrus_communis	pycom02g12620 pycom02g12630 pycom15g23750 pycom15g26490 pycom17g21160
rosa_chinensis	RchiOBHm_Chr2g0103421 RchiOBHm_Chr2g0103431 RchiOBHm_Chr2g0103441 RchiOBHm_Chr2g0103491 RchiOBHm_Chr2g0103501 RchiOBHm_Chr2g0103521 RchiOBHm_Chr2g0103541 RchiOBHm_Chr2g0103551 RchiOBHm_Chr2g0103561 RchiOBHm_Chr2g0134821 RchiOBHm_Chr2g0152161 RchiOBHm_Chr2g0152181 RchiOBHm_Chr7g0227261 RchiOBHm_Chr7g0227351 RchiOBHm_Chr7g0227431
rosa_laevigata	RLG00000001649 RLG00000001653 RLG00000001659 RLG00000017235 RLG00000017236 RLG00000017240 RLG00000017241 RLG00000017242 RLG00000017243 RLG00000017244 RLG00000017349 RLG00000019424 RLG00000020614 RLG00000020615
rosa_multiflora	Rmu_co8247875.1_g000001 Rmu_co8429551.1_g000001 Rmu_sc0000173.1_g000009 Rmu_sc0000718.1_g000004 Rmu_sc0001530.1_g000001 Rmu_sc0001530.1_g000002 Rmu_sc0001530.1_g000004 Rmu_sc0001530.1_g000005 Rmu_sc0001852.1_g000023 Rmu_sc0001852.1_g000024 Rmu_sc0002434.1_g000001 Rmu_sc0002434.1_g000002 Rmu_sc0003043.1_g000016 Rmu_sc0003153.1_g000005 Rmu_sc0011039.1_g000001 Rmu_sc0031822.1_g000001
rosa_roxburghii	Rroxscaffold_2G00095860 Rroxscaffold_2G00095870 Rroxscaffold_2G00109720 Rroxscaffold_2G00139530 Rroxscaffold_2G00139550 Rroxscaffold_2G00139570 Rroxscaffold_2G00139580 Rroxscaffold_2G00139630 Rroxscaffold_2G00139640 Rroxscaffold_4G00328430 Rroxscaffold_4G00328440 Rroxscaffold_4G00328450
rosa_rugosa	Rorug02G0114900 Rorug02G0115000 Rorug02G0115000 Rorug02G0115200 Rorug02G0115300 Rorug02G0115400 Rorug02G0115500 Rorug02G0115600 Rorug02G0115600 Rorug02G0115600 Rorug02G0115700 Rorug02G0320300 Rorug02G0431300 Rorug02G0431300 Rorug06G0028200 Rorug07G0241300
rosa_samantha	Rh2AG163200 Rh2AG163300 Rh2AG163700 Rh2AG163800 Rh2AG163900 Rh2AG164000 Rh2AG373400 Rh2AG492600 Rh2BG170300 Rh2BG170400 Rh2BG170800 Rh2BG170900 Rh2BG171000 Rh2BG171100 Rh2BG171200 Rh2BG377800 Rh2BG505000 Rh2BG505100 Rh2BG505200 Rh2CG170300 Rh2CG170700 Rh2CG479000 Rh2DG169100 Rh2DG169200 Rh2DG169300 Rh2DG516400 Rh7AG391200 Rh7BG376200 Rh7CG410200 Rh7CG411500 Rh7CG412000 Rh7CG412700 Rh7DG388800
rosa_wichuraiana	Rw2G012830 Rw2G012840 Rw2G012870 Rw2G012880 Rw2G012890 Rw2G012900 Rw2G030310 Rw2G040470 Rw2G040480 Rw7G032720 Rw7G032730 Rw7G032750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	256
AciI	CCGC	1 cut(s)	216
AcoI	YGGCCR	1 cut(s)	518
AcsI	RAATTY	4 cut(s)	398, 430, 583, 799
AcuI	CTGAAG	1 cut(s)	135
AfiI	CCNNNNNNNGG	1 cut(s)	370
AjnI	CCWGG	2 cut(s)	363, 561
AloI	GAACNNNNNNTCC	2 cut(s)	150, 182
AluBI	AGCT	3 cut(s)	164, 320, 448
AluI	AGCT	3 cut(s)	164, 320, 448
AoxI	GGCC	4 cut(s)	145, 278, 373, 518
ApeKI	GCWGC	2 cut(s)	161, 320
ApoI	RAATTY	4 cut(s)	398, 430, 583, 799
AspLEI	GCGC	1 cut(s)	132
AspS9I	GGNCC	1 cut(s)	373
AsuHPI	GGTGA	4 cut(s)	6, 59, 352, 729
BalI	TGGCCA	1 cut(s)	520
BbvI	GCAGC	2 cut(s)	173, 307
BceAI	ACGGC	1 cut(s)	650
BciT130I	CCWGG	2 cut(s)	365, 563
BfaI	CTAG	2 cut(s)	194, 545
BfmI	CTRYAG	1 cut(s)	123
BfoI	RGCGCY	1 cut(s)	133
BfuAI	ACCTGC	1 cut(s)	256
BglII	AGATCT	1 cut(s)	421
BisI	GCNGC	3 cut(s)	162, 217, 321
BlsI	GCNGC	3 cut(s)	163, 218, 322
Bme1390I	CCNGG	2 cut(s)	365, 563
BmgT120I	GGNCC	1 cut(s)	373
BmrFI	CCNGG	2 cut(s)	365, 563
BmsI	GCATC	1 cut(s)	476
BpuEI	CTTGAG	1 cut(s)	857
BsaJI	CCNNGG	3 cut(s)	148, 363, 364
BsaXI	ACNNNNNCTCC	2 cut(s)	150, 180
Bsc4I	CCNNNNNNNGG	1 cut(s)	370
BseBI	CCWGG	2 cut(s)	365, 563
BseDI	CCNNGG	3 cut(s)	148, 363, 364
BseLI	CCNNNNNNNGG	1 cut(s)	370
BseRI	GAGGAG	1 cut(s)	171
BseXI	GCAGC	2 cut(s)	173, 307
BseYI	CCCAGC	1 cut(s)	713
BsgI	GTGCAG	2 cut(s)	61, 853
BshFI	GGCC	4 cut(s)	147, 280, 375, 520
BslFI	GGGAC	1 cut(s)	41
BslI	CCNNNNNNNGG	1 cut(s)	370
BsmFI	GGGAC	1 cut(s)	41
BsmI	GAATGC	2 cut(s)	218, 735
BsnI	GGCC	4 cut(s)	147, 280, 375, 520
Bsp143I	GATC	1 cut(s)	421
Bsp19I	CCATGG	1 cut(s)	148
BspACI	CCGC	1 cut(s)	216
BspANI	GGCC	4 cut(s)	147, 280, 375, 520
BspMAI	CTGCAG	1 cut(s)	127
BspMI	ACCTGC	1 cut(s)	256
BssECI	CCNNGG	3 cut(s)	148, 363, 364
BssMI	GATC	1 cut(s)	421
BssT1I	CCWWGG	1 cut(s)	148
Bst2UI	CCWGG	2 cut(s)	365, 563
Bst4CI	ACNGT	1 cut(s)	382
Bst6I	CTCTTC	1 cut(s)	111
BstC8I	GCNNGC	1 cut(s)	325
BstDSI	CCRYGG	1 cut(s)	148
BstEII	GGTNACC	1 cut(s)	12
BstH2I	RGCGCY	1 cut(s)	133
BstHHI	GCGC	1 cut(s)	132
BstKTI	GATC	1 cut(s)	424
BstMBI	GATC	1 cut(s)	421
BstMWI	GCNNNNNNNGC	1 cut(s)	841
BstNI	CCWGG	2 cut(s)	365, 563
BstNSI	RCATGY	1 cut(s)	835
BstPI	GGTNACC	1 cut(s)	12
BstSCI	CCNGG	2 cut(s)	363, 561
BstSFI	CTRYAG	1 cut(s)	123
BstV1I	GCAGC	2 cut(s)	173, 307
BstX2I	RGATCY	1 cut(s)	421
BstYI	RGATCY	1 cut(s)	421
BsuRI	GGCC	4 cut(s)	147, 280, 375, 520
BtgI	CCRYGG	1 cut(s)	148
BtsI	GCAGTG	1 cut(s)	865
BtsIMutI	CAGTG	4 cut(s)	65, 78, 111, 865
BveI	ACCTGC	1 cut(s)	256
Cac8I	GCNNGC	1 cut(s)	325
CfoI	GCGC	1 cut(s)	132
Cfr13I	GGNCC	1 cut(s)	373
CspCI	CAANNNNNGTGG	2 cut(s)	610, 645
CviAII	CATG	6 cut(s)	149, 220, 596, 747, 796, 832
DpnI	GATC	1 cut(s)	423
DpnII	GATC	1 cut(s)	421
EaeI	YGGCCR	1 cut(s)	518
Eam1104I	CTCTTC	1 cut(s)	111
EarI	CTCTTC	1 cut(s)	111
Eco130I	CCWWGG	1 cut(s)	148
Eco147I	AGGCCT	1 cut(s)	280
Eco57I	CTGAAG	1 cut(s)	135
Eco91I	GGTNACC	1 cut(s)	12
EcoO65I	GGTNACC	1 cut(s)	12
EcoRI	GAATTC	1 cut(s)	583
EcoRII	CCWGG	2 cut(s)	363, 561
EcoT14I	CCWWGG	1 cut(s)	148
ErhI	CCWWGG	1 cut(s)	148
FaeI	CATG	6 cut(s)	152, 223, 599, 750, 799, 835
FalI	AAGNNNNNCTT	2 cut(s)	268, 300
FaqI	GGGAC	1 cut(s)	41
FatI	CATG	6 cut(s)	148, 219, 595, 746, 795, 831
Fnu4HI	GCNGC	3 cut(s)	162, 217, 321
Fsp4HI	GCNGC	3 cut(s)	162, 217, 321
FspBI	CTAG	2 cut(s)	194, 545
GlaI	GCGC	1 cut(s)	131
GluI	GCNGC	3 cut(s)	162, 217, 321
GsaI	CCCAGC	1 cut(s)	717
HaeII	RGCGCY	1 cut(s)	133
HaeIII	GGCC	4 cut(s)	147, 280, 375, 520
HhaI	GCGC	1 cut(s)	132
Hin1II	CATG	6 cut(s)	152, 223, 599, 750, 799, 835
Hin6I	GCGC	1 cut(s)	130
HinP1I	GCGC	1 cut(s)	130
HincII	GTYRAC	1 cut(s)	141
HindII	GTYRAC	1 cut(s)	141
HindIII	AAGCTT	1 cut(s)	446
HinfI	GANTC	2 cut(s)	119, 860
HphI	GGTGA	4 cut(s)	6, 59, 352, 729
Hpy166II	GTNNAC	2 cut(s)	141, 542
Hpy188I	TCNGA	4 cut(s)	176, 393, 453, 463
Hpy188III	TCNNGA	1 cut(s)	314
Hpy8I	GTNNAC	2 cut(s)	141, 542
HpyAV	CCTTC	4 cut(s)	291, 358, 505, 572
HpyCH4III	ACNGT	1 cut(s)	382
HpyCH4V	TGCA	8 cut(s)	78, 125, 323, 489, 603, 733, 791, 870
HpyF10VI	GCNNNNNNNGC	1 cut(s)	841
Hsp92II	CATG	6 cut(s)	152, 223, 599, 750, 799, 835
HspAI	GCGC	1 cut(s)	130
Kzo9I	GATC	1 cut(s)	421
LmnI	GCTCC	1 cut(s)	158
LpnPI	CCDG	8 cut(s)	129, 251, 350, 377, 534, 548, 575, 727
Lsp1109I	GCAGC	2 cut(s)	173, 307
LweI	GCATC	1 cut(s)	476
MaeI	CTAG	2 cut(s)	194, 545
MaeIII	GTNAC	5 cut(s)	12, 268, 358, 735, 827
MalI	GATC	1 cut(s)	423
MboI	GATC	1 cut(s)	421
MboII	GAAGA	5 cut(s)	128, 276, 343, 671, 683
MflI	RGATCY	1 cut(s)	421
MlsI	TGGCCA	1 cut(s)	520
MluCI	AATT	8 cut(s)	34, 83, 223, 231, 398, 430, 583, 799
MluNI	TGGCCA	1 cut(s)	520
MlyI	GAGTC	1 cut(s)	128
MnlI	CCTC	6 cut(s)	18, 149, 288, 694, 762, 850
Mox20I	TGGCCA	1 cut(s)	520
MscI	TGGCCA	1 cut(s)	520
MseI	TTAA	4 cut(s)	72, 309, 428, 779
MslI	CAYNNNNRTG	2 cut(s)	594, 745
Msp20I	TGGCCA	1 cut(s)	520
MspA1I	CMGCKG	1 cut(s)	164
MspR9I	CCNGG	2 cut(s)	365, 563
Mva1269I	GAATGC	2 cut(s)	218, 735
MvaI	CCWGG	2 cut(s)	365, 563
MwoI	GCNNNNNNNGC	1 cut(s)	841
NcoI	CCATGG	1 cut(s)	148
NdeII	GATC	1 cut(s)	421
NlaIII	CATG	6 cut(s)	152, 223, 599, 750, 799, 835
NmuCI	GTSAC	4 cut(s)	12, 358, 735, 827
NspI	RCATGY	1 cut(s)	835
PasI	CCCWGGG	1 cut(s)	364
PceI	AGGCCT	1 cut(s)	280
PctI	GAATGC	2 cut(s)	218, 735
PfeI	GAWTC	1 cut(s)	860
PkrI	GCNGC	3 cut(s)	163, 218, 322
PleI	GAGTC	1 cut(s)	127
PpsI	GAGTC	1 cut(s)	127
Psp6I	CCWGG	2 cut(s)	363, 561
PspEI	GGTNACC	1 cut(s)	12
PspFI	CCCAGC	1 cut(s)	713
PspGI	CCWGG	2 cut(s)	363, 561
PspPI	GGNCC	1 cut(s)	373
PstI	CTGCAG	1 cut(s)	127
PsuI	RGATCY	1 cut(s)	421
PvuII	CAGCTG	1 cut(s)	164
RseI	CAYNNNNRTG	2 cut(s)	594, 745
SaqAI	TTAA	4 cut(s)	72, 309, 428, 779
SatI	GCNGC	3 cut(s)	162, 217, 321
Sau3AI	GATC	1 cut(s)	421
Sau96I	GGNCC	1 cut(s)	373
SchI	GAGTC	1 cut(s)	128
ScrFI	CCNGG	2 cut(s)	365, 563
SetI	ASST	6 cut(s)	19, 166, 270, 322, 450, 826
SfaNI	GCATC	1 cut(s)	476
SfcI	CTRYAG	1 cut(s)	123
SmiMI	CAYNNNNRTG	2 cut(s)	594, 745
SmlI	CTYRAG	1 cut(s)	836
SmoI	CTYRAG	1 cut(s)	836
Sse9I	AATT	8 cut(s)	34, 83, 223, 231, 398, 430, 583, 799
SseBI	AGGCCT	1 cut(s)	280
SsiI	CCGC	1 cut(s)	216
SspI	AATATT	1 cut(s)	256
SspMI	CTAG	2 cut(s)	194, 545
StuI	AGGCCT	1 cut(s)	280
StyD4I	CCNGG	2 cut(s)	363, 561
StyI	CCWWGG	1 cut(s)	148
TaaI	ACNGT	1 cut(s)	382
TasI	AATT	8 cut(s)	34, 83, 223, 231, 398, 430, 583, 799
TauI	GCSGC	1 cut(s)	219
TfiI	GAWTC	1 cut(s)	860
Tru1I	TTAA	4 cut(s)	72, 309, 428, 779
Tru9I	TTAA	4 cut(s)	72, 309, 428, 779
TscAI	CASTG	4 cut(s)	72, 85, 118, 872
TseFI	GTSAC	4 cut(s)	12, 358, 735, 827
TseI	GCWGC	2 cut(s)	161, 320
Tsp45I	GTSAC	4 cut(s)	12, 358, 735, 827
TspDTI	ATGAA	9 cut(s)	17, 197, 225, 236, 276, 324, 422, 591, 812
TspRI	CASTG	4 cut(s)	72, 85, 118, 872
XapI	RAATTY	4 cut(s)	398, 430, 583, 799
XceI	RCATGY	1 cut(s)	835
XspI	CTAG	2 cut(s)	194, 545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.