Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000156

Physical Location & Seq

Genomic Coordinates Forward (+)

69618419 .. 69620666

Gene Structure 2248 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ52133

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGGCTTCTCTTCGCCCTCTGAGATTTTGTTCTACCACTCCCCATTTTTTCAAGATCATTCTGGAGGACACTTCTCGACACAAACTTAAAATTCTGAAGAAATTTGTGATGAAATATGGGAATTCTCATTTTGATGTTTGCATATTTGATGTGAGTGCCACGGAGATTGATTATCCCATGACAATGCCCAAGATTGAAGAAGCTGATGAAGATGATGACTTATCTATTGAAATCTTGGAGGGTTTTCAACCTAGTCCTAAAACAAGAAGGAAATGTCCATTAGCATGTCCTCCTTACAAGAAAATGAGAGCAAGTTTGAGCGGCAAAGCAGACGTGAGTTCTGAAATTGAGAACACTCAACCTTGTGACATGTTCGAGAAGCCAATCACAAACAAAGAGTCACATCGCAATAAAGTAGAAGTGGAAAATCTGGAAAATAAAGGTGTAGATGATATGTCGGCAGAGAAAGATGGCAGAGTCCTTGGAGGCTTATCTGGCACTCAAAGTCTTTGTTATCGGAGTTTTCCAGAAGACATCTCATTAAGCTGCCTGCAAGTAACATTCCTTAGAGTTTTGGATGGAAGAATATGGTCTGTTGAATTCACATATACTAAAGAGAAAGCCCAATTCCAGGGTGGCTGGTTGACAGTTGTGAAGGACAATAATTTGGAAGTTGGCGATGTGTGTGTCTTTGTCTTGATTAAGGACATCAAGCTTTTATTAGGTGTTTTGTTTTTCCGCACTTCAGAAGCTACAACTTGGTTCTTGTCTAATGGGGAAAATTTTTTTCTGGCTGAAAGAGATGGTGGAAGCTCTTCTAGTTCTCAAACAATCCTAAAGCGAACACATGAGGTTGTTGCAAGGGTGAAGCCATTGACTGCAACTGAGAAAGCTAATGCCTTCAAATCTGATAAACCTTCTTTTAGGATTGCCATGCATCCTTATTCTATCCATTATAATAATGTGTATTTGCCAAATGAATTTGCCAAGACATATCTTACGAAGCTGTCTTCTGGCGTAGCCATCCTTCAAGTTTCAGATGGAAGAACTTGGTCTGTTAACTTCAAGTTTGATCATGCAAACTCAAGGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

364

Amino Acids

41.21

Weight (kDa)

7.57

Isoelectric Point (pI)

45.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	186 - 243	1.8e-09	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000156)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49475 AT3G18960 AT3G18960 AT3G18960 AT4G01580
fragaria_vesca	FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14670 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14690 FvH4_1g14700 FvH4_1g29250 FvH4_6g29400 FvH4_6g38681 FvH4_6g38690 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_7g02010
malus_domestica	MD00G1020600.v1.1 MD00G1022000.v1.1 MD00G1022100.v1.1 MD02G1159700.v1.1 MD02G1159800.v1.1 MD02G1159900.v1.1 MD02G1160000.v1.1 MD02G1160300.v1.1 MD15G1274100.v1.1 MD15G1274200.v1.1 MD15G1274400.v1.1 MD15G1302000.v1.1
prunus_persica	Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.3G083400_v2.0.a1 Prupe.6G229600_v2.0.a1 Prupe.7G039600_v2.0.a1 Prupe.7G044500_v2.0.a1 Prupe.7G044800_v2.0.a1 Prupe.7G143100_v2.0.a1 Prupe.7G143500_v2.0.a1 Prupe.7G143600_v2.0.a1 Prupe.7G143700_v2.0.a1 Prupe.7G143800_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.8G072800_v2.0.a1 Prupe.8G072800_v2.0.a1
pyrus_communis	pycom02g12620 pycom02g12630 pycom15g23750 pycom15g26490 pycom17g21160
rosa_chinensis	RchiOBHm_Chr2g0103421 RchiOBHm_Chr2g0103431 RchiOBHm_Chr2g0103441 RchiOBHm_Chr2g0103491 RchiOBHm_Chr2g0103501 RchiOBHm_Chr2g0103521 RchiOBHm_Chr2g0103541 RchiOBHm_Chr2g0103551 RchiOBHm_Chr2g0103561 RchiOBHm_Chr2g0134821 RchiOBHm_Chr2g0152161 RchiOBHm_Chr2g0152181 RchiOBHm_Chr7g0227261 RchiOBHm_Chr7g0227351 RchiOBHm_Chr7g0227431
rosa_laevigata	RLG00000001649 RLG00000001653 RLG00000001659 RLG00000017235 RLG00000017236 RLG00000017240 RLG00000017241 RLG00000017242 RLG00000017243 RLG00000017244 RLG00000017349 RLG00000019424 RLG00000020614 RLG00000020615
rosa_multiflora	Rmu_co8247875.1_g000001 Rmu_co8429551.1_g000001 Rmu_sc0000173.1_g000009 Rmu_sc0000718.1_g000004 Rmu_sc0001530.1_g000001 Rmu_sc0001530.1_g000002 Rmu_sc0001530.1_g000004 Rmu_sc0001530.1_g000005 Rmu_sc0001852.1_g000023 Rmu_sc0001852.1_g000024 Rmu_sc0002434.1_g000001 Rmu_sc0002434.1_g000002 Rmu_sc0003043.1_g000016 Rmu_sc0003153.1_g000005 Rmu_sc0011039.1_g000001 Rmu_sc0031822.1_g000001
rosa_roxburghii	Rroxscaffold_2G00095860 Rroxscaffold_2G00095870 Rroxscaffold_2G00109720 Rroxscaffold_2G00139530 Rroxscaffold_2G00139550 Rroxscaffold_2G00139570 Rroxscaffold_2G00139580 Rroxscaffold_2G00139630 Rroxscaffold_2G00139640 Rroxscaffold_4G00328430 Rroxscaffold_4G00328440 Rroxscaffold_4G00328450
rosa_rugosa	Rorug02G0114900 Rorug02G0115000 Rorug02G0115000 Rorug02G0115200 Rorug02G0115300 Rorug02G0115400 Rorug02G0115500 Rorug02G0115600 Rorug02G0115600 Rorug02G0115600 Rorug02G0115700 Rorug02G0320300 Rorug02G0431300 Rorug02G0431300 Rorug06G0028200 Rorug07G0241300
rosa_samantha	Rh2AG163200 Rh2AG163300 Rh2AG163700 Rh2AG163800 Rh2AG163900 Rh2AG164000 Rh2AG373400 Rh2AG492600 Rh2BG170300 Rh2BG170400 Rh2BG170800 Rh2BG170900 Rh2BG171000 Rh2BG171100 Rh2BG171200 Rh2BG377800 Rh2BG505000 Rh2BG505100 Rh2BG505200 Rh2CG170300 Rh2CG170700 Rh2CG479000 Rh2DG169100 Rh2DG169200 Rh2DG169300 Rh2DG516400 Rh7AG391200 Rh7BG376200 Rh7CG410200 Rh7CG411500 Rh7CG412000 Rh7CG412700 Rh7DG388800
rosa_wichuraiana	Rw2G012830 Rw2G012840 Rw2G012870 Rw2G012880 Rw2G012890 Rw2G012900 Rw2G030310 Rw2G040470 Rw2G040480 Rw7G032720 Rw7G032730 Rw7G032750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	957
AccBSI	CCGCTC	1 cut(s)	321
AciI	CCGC	2 cut(s)	321, 739
AcsI	RAATTY	6 cut(s)	90, 101, 121, 599, 781, 980
AcuI	CTGAAG	2 cut(s)	116, 729
AfiI	CCNNNNNNNGG	1 cut(s)	631
AflIII	ACRYGT	1 cut(s)	369
AgsI	TTSAA	8 cut(s)	52, 197, 230, 248, 599, 904, 1031, 1066
AjiI	CACGTC	1 cut(s)	334
AjnI	CCWGG	1 cut(s)	630
AluBI	AGCT	7 cut(s)	203, 546, 715, 752, 813, 893, 1006
AluI	AGCT	7 cut(s)	203, 546, 715, 752, 813, 893, 1006
ApeKI	GCWGC	1 cut(s)	546
ApoI	RAATTY	6 cut(s)	90, 101, 121, 599, 781, 980
ArsI	GACNNNNNNTTYG	2 cut(s)	383, 415
Asp700I	GAANNNNTTC	1 cut(s)	814
AsuHPI	GGTGA	1 cut(s)	877
BarI	GAAGNNNNNNTAC	2 cut(s)	1011, 1043
BbsI	GAAGAC	2 cut(s)	537, 1002
BbvI	GCAGC	1 cut(s)	533
BccI	CCATC	5 cut(s)	464, 572, 797, 1031, 1034
BciT130I	CCWGG	1 cut(s)	632
BclI	TGATCA	1 cut(s)	1072
BfaI	CTAG	2 cut(s)	252, 819
BisI	GCNGC	2 cut(s)	322, 547
BlsI	GCNGC	2 cut(s)	323, 548
Bme1390I	CCNGG	1 cut(s)	632
BmgBI	CACGTC	1 cut(s)	334
BmrFI	CCNGG	1 cut(s)	632
BmsI	GCATC	1 cut(s)	946
BpiI	GAAGAC	2 cut(s)	537, 1002
BpmI	CTGGAG	1 cut(s)	83
BpuEI	CTTGAG	1 cut(s)	1069
BsaJI	CCNNGG	3 cut(s)	159, 481, 631
Bsc4I	CCNNNNNNNGG	1 cut(s)	631
BseBI	CCWGG	1 cut(s)	632
BseDI	CCNNGG	3 cut(s)	159, 481, 631
BseGI	GGATG	3 cut(s)	583, 937, 1023
BseLI	CCNNNNNNNGG	1 cut(s)	631
BseMII	CTCAG	2 cut(s)	11, 876
BseXI	GCAGC	1 cut(s)	533
BslI	CCNNNNNNNGG	1 cut(s)	631
Bsp143I	GATC	2 cut(s)	54, 1072
BspACI	CCGC	2 cut(s)	321, 739
BspCNI	CTCAG	2 cut(s)	12, 877
BspQI	GCTCTTC	1 cut(s)	820
BsrBI	CCGCTC	1 cut(s)	321
BssECI	CCNNGG	3 cut(s)	159, 481, 631
BssMI	GATC	2 cut(s)	54, 1072
BssT1I	CCWWGG	1 cut(s)	481
Bst2UI	CCWGG	1 cut(s)	632
Bst4CI	ACNGT	1 cut(s)	649
Bst6I	CTCTTC	2 cut(s)	15, 820
BstC8I	GCNNGC	1 cut(s)	551
BstDEI	CTNAG	3 cut(s)	20, 566, 885
BstDSI	CCRYGG	1 cut(s)	159
BstF5I	GGATG	3 cut(s)	583, 937, 1023
BstKTI	GATC	2 cut(s)	57, 1075
BstMBI	GATC	2 cut(s)	54, 1072
BstMWI	GCNNNNNNNGC	1 cut(s)	495
BstNI	CCWGG	1 cut(s)	632
BstNSI	RCATGY	2 cut(s)	288, 373
BstSCI	CCNGG	1 cut(s)	630
BstV1I	GCAGC	1 cut(s)	533
BstV2I	GAAGAC	2 cut(s)	537, 1002
BtgI	CCRYGG	1 cut(s)	159
BtgZI	GCGATG	2 cut(s)	389, 693
BtrI	CACGTC	1 cut(s)	334
BtsCI	GGATG	3 cut(s)	583, 937, 1023
Cac8I	GCNNGC	1 cut(s)	551
CspCI	CAANNNNNGTGG	2 cut(s)	148, 183
CviAII	CATG	6 cut(s)	178, 285, 370, 848, 934, 1076
DdeI	CTNAG	3 cut(s)	20, 566, 885
DpnI	GATC	2 cut(s)	56, 1074
DpnII	GATC	2 cut(s)	54, 1072
Eam1104I	CTCTTC	2 cut(s)	15, 820
EarI	CTCTTC	2 cut(s)	15, 820
Eco130I	CCWWGG	1 cut(s)	481
Eco57I	CTGAAG	2 cut(s)	116, 729
EcoRI	GAATTC	2 cut(s)	121, 599
EcoRII	CCWGG	1 cut(s)	630
EcoT14I	CCWWGG	1 cut(s)	481
EcoT22I	ATGCAT	1 cut(s)	939
ErhI	CCWWGG	1 cut(s)	481
FaeI	CATG	6 cut(s)	181, 288, 373, 851, 937, 1079
FatI	CATG	6 cut(s)	177, 284, 369, 847, 933, 1075
FbaI	TGATCA	1 cut(s)	1072
Fnu4HI	GCNGC	2 cut(s)	322, 547
FokI	GGATG	3 cut(s)	590, 924, 1010
Fsp4HI	GCNGC	2 cut(s)	322, 547
FspBI	CTAG	2 cut(s)	252, 819
GluI	GCNGC	2 cut(s)	322, 547
GsuI	CTGGAG	1 cut(s)	83
Hin1II	CATG	6 cut(s)	181, 288, 373, 851, 937, 1079
HincII	GTYRAC	2 cut(s)	645, 1060
HindII	GTYRAC	2 cut(s)	645, 1060
HindIII	AAGCTT	1 cut(s)	713
HinfI	GANTC	2 cut(s)	398, 477
HpaI	GTTAAC	1 cut(s)	1060
HphI	GGTGA	1 cut(s)	877
Hpy166II	GTNNAC	2 cut(s)	645, 1060
Hpy188I	TCNGA	7 cut(s)	21, 96, 343, 519, 748, 910, 1039
Hpy188III	TCNNGA	7 cut(s)	52, 62, 75, 376, 431, 527, 697
Hpy8I	GTNNAC	2 cut(s)	645, 1060
HpyAV	CCTTC	5 cut(s)	261, 649, 910, 927, 1037
HpyCH4III	ACNGT	1 cut(s)	649
HpyCH4IV	ACGT	1 cut(s)	333
HpyCH4V	TGCA	6 cut(s)	141, 553, 860, 881, 937, 1079
HpyF10VI	GCNNNNNNNGC	1 cut(s)	495
HpyF3I	CTNAG	3 cut(s)	20, 566, 885
HpySE526I	ACGT	1 cut(s)	333
Hsp92II	CATG	6 cut(s)	181, 288, 373, 851, 937, 1079
Ksp22I	TGATCA	1 cut(s)	1072
KspAI	GTTAAC	1 cut(s)	1060
Kzo9I	GATC	2 cut(s)	54, 1072
LguI	GCTCTTC	1 cut(s)	820
Lsp1109I	GCAGC	1 cut(s)	533
LweI	GCATC	1 cut(s)	946
MaeI	CTAG	2 cut(s)	252, 819
MaeII	ACGT	1 cut(s)	333
MaeIII	GTNAC	3 cut(s)	365, 399, 556
MalI	GATC	2 cut(s)	56, 1074
MbiI	CCGCTC	1 cut(s)	321
MboI	GATC	2 cut(s)	54, 1072
MboII	GAAGA	8 cut(s)	109, 209, 221, 542, 594, 807, 1002, 1056
MluCI	AATT	9 cut(s)	90, 101, 121, 345, 599, 626, 664, 781, 980
MlyI	GAGTC	2 cut(s)	407, 486
MnlI	CCTC	6 cut(s)	27, 58, 232, 300, 479, 844
Mph1103I	ATGCAT	1 cut(s)	939
MroXI	GAANNNNTTC	1 cut(s)	814
MseI	TTAA	4 cut(s)	87, 542, 702, 1059
MslI	CAYNNNNRTG	3 cut(s)	132, 182, 283
MspR9I	CCNGG	1 cut(s)	632
MvaI	CCWGG	1 cut(s)	632
MwoI	GCNNNNNNNGC	1 cut(s)	495
NdeII	GATC	2 cut(s)	54, 1072
NlaIII	CATG	6 cut(s)	181, 288, 373, 851, 937, 1079
NmuCI	GTSAC	2 cut(s)	365, 399
NsiI	ATGCAT	1 cut(s)	939
NspI	RCATGY	2 cut(s)	288, 373
PciI	ACATGT	1 cut(s)	369
PciSI	GCTCTTC	1 cut(s)	820
PdmI	GAANNNNTTC	1 cut(s)	814
PkrI	GCNGC	2 cut(s)	323, 548
PleI	GAGTC	2 cut(s)	406, 485
PpsI	GAGTC	2 cut(s)	406, 485
PscI	ACATGT	1 cut(s)	369
PsiI	TTATAA	1 cut(s)	957
Psp6I	CCWGG	1 cut(s)	630
PspGI	CCWGG	1 cut(s)	630
RseI	CAYNNNNRTG	3 cut(s)	132, 182, 283
SapI	GCTCTTC	1 cut(s)	820
SaqAI	TTAA	4 cut(s)	87, 542, 702, 1059
SatI	GCNGC	2 cut(s)	322, 547
Sau3AI	GATC	2 cut(s)	54, 1072
SchI	GAGTC	2 cut(s)	407, 486
ScrFI	CCNGG	1 cut(s)	632
SfaNI	GCATC	1 cut(s)	946
SmiMI	CAYNNNNRTG	3 cut(s)	132, 182, 283
SmlI	CTYRAG	1 cut(s)	1084
SmoI	CTYRAG	1 cut(s)	1084
Sse9I	AATT	9 cut(s)	90, 101, 121, 345, 599, 626, 664, 781, 980
SsiI	CCGC	2 cut(s)	321, 739
SspMI	CTAG	2 cut(s)	252, 819
StyD4I	CCNGG	1 cut(s)	630
StyI	CCWWGG	1 cut(s)	481
TaaI	ACNGT	1 cut(s)	649
TaiI	ACGT	1 cut(s)	336
TaqI	TCGA	2 cut(s)	76, 375
TasI	AATT	9 cut(s)	90, 101, 121, 345, 599, 626, 664, 781, 980
TauI	GCSGC	1 cut(s)	324
Tru1I	TTAA	4 cut(s)	87, 542, 702, 1059
Tru9I	TTAA	4 cut(s)	87, 542, 702, 1059
TseFI	GTSAC	2 cut(s)	365, 399
TseI	GCWGC	1 cut(s)	546
Tsp45I	GTSAC	2 cut(s)	365, 399
TspDTI	ATGAA	3 cut(s)	125, 222, 993
TspGWI	ACGGA	1 cut(s)	176
XapI	RAATTY	6 cut(s)	90, 101, 121, 599, 781, 980
XceI	RCATGY	2 cut(s)	288, 373
XcmI	CCANNNNNNNNNTGG	1 cut(s)	632
XmnI	GAANNNNTTC	1 cut(s)	814
XspI	CTAG	2 cut(s)	252, 819
Zsp2I	ATGCAT	1 cut(s)	939

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.