B3 domain-containing
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 1021 |
| AclWI | GGATC | 1 cut(s) | 135 |
| AcoI | YGGCCR | 1 cut(s) | 13 |
| AcsI | RAATTY | 8 cut(s) | 93, 104, 289, 507, 812, 908, 1069, 1468 |
| AcuI | CTGAAG | 2 cut(s) | 1403, 1433 |
| AfaI | GTAC | 3 cut(s) | 493, 1365, 1572 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1091 |
| AjnI | CCWGG | 2 cut(s) | 10, 1084 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 559, 591 |
| Alw21I | GWGCWC | 2 cut(s) | 529, 1551 |
| Alw26I | GTCTC | 3 cut(s) | 72, 472, 1524 |
| AlwI | GGATC | 1 cut(s) | 135 |
| Ama87I | CYCGRG | 1 cut(s) | 487 |
| AoxI | GGCC | 3 cut(s) | 13, 1238, 1439 |
| ApeKI | GCWGC | 2 cut(s) | 838, 1283 |
| ApoI | RAATTY | 8 cut(s) | 93, 104, 289, 507, 812, 908, 1069, 1468 |
| AspLEI | GCGC | 1 cut(s) | 1048 |
| AspS9I | GGNCC | 1 cut(s) | 1018 |
| AsuHPI | GGTGA | 2 cut(s) | 134, 1462 |
| AsuII | TTCGAA | 2 cut(s) | 300, 1038 |
| AvaI | CYCGRG | 1 cut(s) | 487 |
| AvaII | GGWCC | 1 cut(s) | 1018 |
| BaeGI | GKGCMC | 2 cut(s) | 357, 419 |
| BalI | TGGCCA | 1 cut(s) | 15 |
| BanII | GRGCYC | 1 cut(s) | 1551 |
| Bbv12I | GWGCWC | 2 cut(s) | 529, 1551 |
| BbvI | GCAGC | 2 cut(s) | 825, 1270 |
| BccI | CCATC | 1 cut(s) | 814 |
| BciT130I | CCWGG | 2 cut(s) | 12, 1086 |
| BclI | TGATCA | 2 cut(s) | 682, 1276 |
| BcoDI | GTCTC | 3 cut(s) | 72, 472, 1524 |
| BfaI | CTAG | 5 cut(s) | 75, 237, 269, 495, 1185 |
| BfmI | CTRYAG | 2 cut(s) | 256, 705 |
| BglII | AGATCT | 1 cut(s) | 759 |
| BisI | GCNGC | 2 cut(s) | 839, 1284 |
| BlsI | GCNGC | 2 cut(s) | 840, 1285 |
| BmcAI | AGTACT | 1 cut(s) | 493 |
| Bme1390I | CCNGG | 2 cut(s) | 12, 1086 |
| Bme18I | GGWCC | 1 cut(s) | 1018 |
| BmeT110I | CYCGRG | 1 cut(s) | 487 |
| BmgT120I | GGNCC | 1 cut(s) | 1018 |
| BmrFI | CCNGG | 2 cut(s) | 12, 1086 |
| BmrI | ACTGGG | 1 cut(s) | 153 |
| BmsI | GCATC | 1 cut(s) | 182 |
| BmuI | ACTGGG | 1 cut(s) | 153 |
| BpmI | CTGGAG | 2 cut(s) | 83, 660 |
| Bpu14I | TTCGAA | 2 cut(s) | 300, 1038 |
| BsaI | GGTCTC | 2 cut(s) | 72, 472 |
| BsaJI | CCNNGG | 3 cut(s) | 327, 540, 1085 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1091 |
| Bse118I | RCCGGY | 1 cut(s) | 1366 |
| Bse1I | ACTGG | 2 cut(s) | 159, 1230 |
| Bse3DI | GCAATG | 3 cut(s) | 580, 849, 1076 |
| BseBI | CCWGG | 2 cut(s) | 12, 1086 |
| BseDI | CCNNGG | 3 cut(s) | 327, 540, 1085 |
| BseGI | GGATG | 1 cut(s) | 1000 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1091 |
| BseMI | GCAATG | 3 cut(s) | 580, 849, 1076 |
| BseNI | ACTGG | 2 cut(s) | 159, 1230 |
| BseRI | GAGGAG | 2 cut(s) | 702, 1113 |
| BseSI | GKGCMC | 2 cut(s) | 357, 419 |
| BseXI | GCAGC | 2 cut(s) | 825, 1270 |
| BseYI | CCCAGC | 1 cut(s) | 1491 |
| BshFI | GGCC | 3 cut(s) | 15, 1240, 1441 |
| BsiHKAI | GWGCWC | 2 cut(s) | 529, 1551 |
| BsiHKCI | CYCGRG | 1 cut(s) | 487 |
| BsiSI | CCGG | 1 cut(s) | 1367 |
| BslFI | GGGAC | 1 cut(s) | 1283 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1091 |
| BsmAI | GTCTC | 3 cut(s) | 72, 472, 1524 |
| BsmBI | CGTCTC | 1 cut(s) | 1524 |
| BsmFI | GGGAC | 1 cut(s) | 1283 |
| BsmI | GAATGC | 1 cut(s) | 728 |
| BsnI | GGCC | 3 cut(s) | 15, 1240, 1441 |
| Bso31I | GGTCTC | 2 cut(s) | 72, 472 |
| BsoBI | CYCGRG | 1 cut(s) | 487 |
| Bsp119I | TTCGAA | 2 cut(s) | 300, 1038 |
| Bsp1286I | GDGCHC | 4 cut(s) | 357, 419, 529, 1551 |
| Bsp143I | GATC | 7 cut(s) | 127, 497, 682, 759, 1276, 1433, 1557 |
| Bsp19I | CCATGG | 1 cut(s) | 540 |
| BspACI | CCGC | 1 cut(s) | 1021 |
| BspANI | GGCC | 3 cut(s) | 15, 1240, 1441 |
| BspHI | TCATGA | 1 cut(s) | 685 |
| BspPI | GGATC | 1 cut(s) | 135 |
| BspQI | GCTCTTC | 1 cut(s) | 652 |
| BspT104I | TTCGAA | 2 cut(s) | 300, 1038 |
| BspTNI | GGTCTC | 2 cut(s) | 72, 472 |
| BsrDI | GCAATG | 3 cut(s) | 580, 849, 1076 |
| BsrFI | RCCGGY | 1 cut(s) | 1366 |
| BsrI | ACTGG | 2 cut(s) | 159, 1230 |
| BssAI | RCCGGY | 1 cut(s) | 1366 |
| BssECI | CCNNGG | 3 cut(s) | 327, 540, 1085 |
| BssMI | GATC | 7 cut(s) | 127, 497, 682, 759, 1276, 1433, 1557 |
| BssT1I | CCWWGG | 1 cut(s) | 540 |
| Bst2UI | CCWGG | 2 cut(s) | 12, 1086 |
| Bst4CI | ACNGT | 5 cut(s) | 142, 260, 352, 414, 679 |
| Bst6I | CTCTTC | 1 cut(s) | 652 |
| BstBI | TTCGAA | 2 cut(s) | 300, 1038 |
| BstC8I | GCNNGC | 3 cut(s) | 17, 843, 847 |
| BstDEI | CTNAG | 1 cut(s) | 1318 |
| BstDSI | CCRYGG | 2 cut(s) | 327, 540 |
| BstF5I | GGATG | 1 cut(s) | 1000 |
| BstHHI | GCGC | 1 cut(s) | 1048 |
| BstKTI | GATC | 7 cut(s) | 130, 500, 685, 762, 1279, 1436, 1560 |
| BstMAI | GTCTC | 3 cut(s) | 72, 472, 1524 |
| BstMBI | GATC | 7 cut(s) | 127, 497, 682, 759, 1276, 1433, 1557 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 651, 851, 1502 |
| BstNI | CCWGG | 2 cut(s) | 12, 1086 |
| BstSCI | CCNGG | 2 cut(s) | 10, 1084 |
| BstSFI | CTRYAG | 2 cut(s) | 256, 705 |
| BstSLI | GKGCMC | 2 cut(s) | 357, 419 |
| BstV1I | GCAGC | 2 cut(s) | 825, 1270 |
| BstX2I | RGATCY | 2 cut(s) | 127, 759 |
| BstYI | RGATCY | 2 cut(s) | 127, 759 |
| BsuRI | GGCC | 3 cut(s) | 15, 1240, 1441 |
| BtgI | CCRYGG | 2 cut(s) | 327, 540 |
| BtsCI | GGATG | 1 cut(s) | 1000 |
| BtsIMutI | CAGTG | 1 cut(s) | 166 |
| Cac8I | GCNNGC | 3 cut(s) | 17, 843, 847 |
| CciI | TCATGA | 1 cut(s) | 685 |
| CfoI | GCGC | 1 cut(s) | 1048 |
| Cfr10I | RCCGGY | 1 cut(s) | 1366 |
| Cfr13I | GGNCC | 1 cut(s) | 1018 |
| Csp6I | GTAC | 3 cut(s) | 492, 1364, 1571 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 316, 351 |
| CviAII | CATG | 4 cut(s) | 541, 686, 1162, 1552 |
| CviQI | GTAC | 3 cut(s) | 492, 1364, 1571 |
| DdeI | CTNAG | 1 cut(s) | 1318 |
| DpnI | GATC | 7 cut(s) | 129, 499, 684, 761, 1278, 1435, 1559 |
| DpnII | GATC | 7 cut(s) | 127, 497, 682, 759, 1276, 1433, 1557 |
| EaeI | YGGCCR | 1 cut(s) | 13 |
| Eam1104I | CTCTTC | 1 cut(s) | 652 |
| EarI | CTCTTC | 1 cut(s) | 652 |
| Ecl136II | GAGCTC | 1 cut(s) | 1549 |
| Eco130I | CCWWGG | 1 cut(s) | 540 |
| Eco24I | GRGCYC | 1 cut(s) | 1551 |
| Eco31I | GGTCTC | 2 cut(s) | 72, 472 |
| Eco32I | GATATC | 1 cut(s) | 827 |
| Eco47I | GGWCC | 1 cut(s) | 1018 |
| Eco53kI | GAGCTC | 1 cut(s) | 1549 |
| Eco57I | CTGAAG | 2 cut(s) | 1403, 1433 |
| Eco88I | CYCGRG | 1 cut(s) | 487 |
| EcoICRI | GAGCTC | 1 cut(s) | 1549 |
| EcoRI | GAATTC | 2 cut(s) | 289, 1468 |
| EcoRII | CCWGG | 2 cut(s) | 10, 1084 |
| EcoRV | GATATC | 1 cut(s) | 827 |
| EcoT14I | CCWWGG | 1 cut(s) | 540 |
| EcoT38I | GRGCYC | 1 cut(s) | 1551 |
| ErhI | CCWWGG | 1 cut(s) | 540 |
| Esp3I | CGTCTC | 1 cut(s) | 1524 |
| FaeI | CATG | 4 cut(s) | 544, 689, 1165, 1555 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1032, 1064 |
| FaqI | GGGAC | 1 cut(s) | 1283 |
| FatI | CATG | 4 cut(s) | 540, 685, 1161, 1551 |
| FbaI | TGATCA | 2 cut(s) | 682, 1276 |
| Fnu4HI | GCNGC | 2 cut(s) | 839, 1284 |
| FokI | GGATG | 1 cut(s) | 1007 |
| FriOI | GRGCYC | 1 cut(s) | 1551 |
| Fsp4HI | GCNGC | 2 cut(s) | 839, 1284 |
| FspBI | CTAG | 5 cut(s) | 75, 237, 269, 495, 1185 |
| GlaI | GCGC | 1 cut(s) | 1047 |
| GluI | GCNGC | 2 cut(s) | 839, 1284 |
| GsaI | CCCAGC | 1 cut(s) | 1495 |
| GsuI | CTGGAG | 2 cut(s) | 83, 660 |
| HaeIII | GGCC | 3 cut(s) | 15, 1240, 1441 |
| HapII | CCGG | 1 cut(s) | 1367 |
| HhaI | GCGC | 1 cut(s) | 1048 |
| Hin1II | CATG | 4 cut(s) | 544, 689, 1165, 1555 |
| Hin6I | GCGC | 1 cut(s) | 1046 |
| HinP1I | GCGC | 1 cut(s) | 1046 |
| HindIII | AAGCTT | 1 cut(s) | 1415 |
| HinfI | GANTC | 7 cut(s) | 536, 575, 663, 1148, 1259, 1402, 1453 |
| HpaII | CCGG | 1 cut(s) | 1367 |
| HphI | GGTGA | 2 cut(s) | 134, 1462 |
| Hpy166II | GTNNAC | 2 cut(s) | 1223, 1582 |
| Hpy188I | TCNGA | 8 cut(s) | 111, 169, 502, 514, 595, 811, 1153, 1592 |
| Hpy188III | TCNNGA | 9 cut(s) | 62, 75, 251, 452, 686, 757, 1204, 1274, 1381 |
| Hpy8I | GTNNAC | 2 cut(s) | 1223, 1582 |
| HpyAV | CCTTC | 6 cut(s) | 278, 447, 602, 869, 1085, 1251 |
| HpyCH4III | ACNGT | 5 cut(s) | 142, 260, 352, 414, 679 |
| HpyCH4IV | ACGT | 3 cut(s) | 1056, 1533, 1594 |
| HpyCH4V | TGCA | 7 cut(s) | 195, 468, 623, 654, 728, 1196, 1539 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 651, 851, 1502 |
| HpyF3I | CTNAG | 1 cut(s) | 1318 |
| HpySE526I | ACGT | 3 cut(s) | 1056, 1533, 1594 |
| Hsp92II | CATG | 4 cut(s) | 544, 689, 1165, 1555 |
| HspAI | GCGC | 1 cut(s) | 1046 |
| Ksp22I | TGATCA | 2 cut(s) | 682, 1276 |
| Kzo9I | GATC | 7 cut(s) | 127, 497, 682, 759, 1276, 1433, 1557 |
| LguI | GCTCTTC | 1 cut(s) | 652 |
| LmnI | GCTCC | 3 cut(s) | 715, 1069, 1100 |
| Lsp1109I | GCAGC | 2 cut(s) | 825, 1270 |
| LweI | GCATC | 1 cut(s) | 182 |
| MaeI | CTAG | 5 cut(s) | 75, 237, 269, 495, 1185 |
| MaeII | ACGT | 3 cut(s) | 1056, 1533, 1594 |
| MaeIII | GTNAC | 6 cut(s) | 260, 346, 1157, 1228, 1321, 1332 |
| MalI | GATC | 7 cut(s) | 129, 499, 684, 761, 1278, 1435, 1559 |
| MboI | GATC | 7 cut(s) | 127, 497, 682, 759, 1276, 1433, 1557 |
| MboII | GAAGA | 5 cut(s) | 380, 639, 888, 1130, 1236 |
| MfeI | CAATTG | 2 cut(s) | 941, 1197 |
| MflI | RGATCY | 2 cut(s) | 127, 759 |
| MhlI | GDGCHC | 4 cut(s) | 357, 419, 529, 1551 |
| MlsI | TGGCCA | 1 cut(s) | 15 |
| MluNI | TGGCCA | 1 cut(s) | 15 |
| Mox20I | TGGCCA | 1 cut(s) | 15 |
| MscI | TGGCCA | 1 cut(s) | 15 |
| MseI | TTAA | 8 cut(s) | 134, 150, 834, 891, 1140, 1269, 1392, 1425 |
| Msp20I | TGGCCA | 1 cut(s) | 15 |
| MspA1I | CMGCKG | 1 cut(s) | 638 |
| MspI | CCGG | 1 cut(s) | 1367 |
| MspR9I | CCNGG | 2 cut(s) | 12, 1086 |
| MunI | CAATTG | 2 cut(s) | 941, 1197 |
| Mva1269I | GAATGC | 1 cut(s) | 728 |
| MvaI | CCWGG | 2 cut(s) | 12, 1086 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 651, 851, 1502 |
| NcoI | CCATGG | 1 cut(s) | 540 |
| NdeII | GATC | 7 cut(s) | 127, 497, 682, 759, 1276, 1433, 1557 |
| NlaIII | CATG | 4 cut(s) | 544, 689, 1165, 1555 |
| NmuCI | GTSAC | 3 cut(s) | 1157, 1321, 1332 |
| NspV | TTCGAA | 2 cut(s) | 300, 1038 |
| PaeR7I | CTCGAG | 1 cut(s) | 487 |
| PagI | TCATGA | 1 cut(s) | 685 |
| PciSI | GCTCTTC | 1 cut(s) | 652 |
| PctI | GAATGC | 1 cut(s) | 728 |
| PfeI | GAWTC | 7 cut(s) | 536, 575, 663, 1148, 1259, 1402, 1453 |
| PkrI | GCNGC | 2 cut(s) | 840, 1285 |
| Psp124BI | GAGCTC | 1 cut(s) | 1551 |
| Psp6I | CCWGG | 2 cut(s) | 10, 1084 |
| PspFI | CCCAGC | 1 cut(s) | 1491 |
| PspGI | CCWGG | 2 cut(s) | 10, 1084 |
| PspPI | GGNCC | 1 cut(s) | 1018 |
| PspXI | VCTCGAGB | 1 cut(s) | 487 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1563, 1595 |
| PsuI | RGATCY | 2 cut(s) | 127, 759 |
| PvuII | CAGCTG | 1 cut(s) | 638 |
| RsaI | GTAC | 3 cut(s) | 493, 1365, 1572 |
| RsaNI | GTAC | 3 cut(s) | 492, 1364, 1571 |
| SacI | GAGCTC | 1 cut(s) | 1551 |
| SapI | GCTCTTC | 1 cut(s) | 652 |
| SaqAI | TTAA | 8 cut(s) | 134, 150, 834, 891, 1140, 1269, 1392, 1425 |
| SatI | GCNGC | 2 cut(s) | 839, 1284 |
| Sau3AI | GATC | 7 cut(s) | 127, 497, 682, 759, 1276, 1433, 1557 |
| Sau96I | GGNCC | 1 cut(s) | 1018 |
| ScaI | AGTACT | 1 cut(s) | 493 |
| ScrFI | CCNGG | 2 cut(s) | 12, 1086 |
| SduI | GDGCHC | 4 cut(s) | 357, 419, 529, 1551 |
| SfaNI | GCATC | 1 cut(s) | 182 |
| SfcI | CTRYAG | 2 cut(s) | 256, 705 |
| Sfr274I | CTCGAG | 1 cut(s) | 487 |
| SfuI | TTCGAA | 2 cut(s) | 300, 1038 |
| SinI | GGWCC | 1 cut(s) | 1018 |
| SlaI | CTCGAG | 1 cut(s) | 487 |
| SmlI | CTYRAG | 1 cut(s) | 487 |
| SmoI | CTYRAG | 1 cut(s) | 487 |
| SsiI | CCGC | 1 cut(s) | 1021 |
| SspMI | CTAG | 5 cut(s) | 75, 237, 269, 495, 1185 |
| SstI | GAGCTC | 1 cut(s) | 1551 |
| StyD4I | CCNGG | 2 cut(s) | 10, 1084 |
| StyI | CCWWGG | 1 cut(s) | 540 |
| TaaI | ACNGT | 5 cut(s) | 142, 260, 352, 414, 679 |
| TaiI | ACGT | 3 cut(s) | 1059, 1536, 1597 |
| TaqI | TCGA | 6 cut(s) | 277, 300, 488, 869, 1038, 1545 |
| TatI | WGTACW | 2 cut(s) | 491, 1570 |
| TfiI | GAWTC | 7 cut(s) | 536, 575, 663, 1148, 1259, 1402, 1453 |
| Tru1I | TTAA | 8 cut(s) | 134, 150, 834, 891, 1140, 1269, 1392, 1425 |
| Tru9I | TTAA | 8 cut(s) | 134, 150, 834, 891, 1140, 1269, 1392, 1425 |
| TscAI | CASTG | 1 cut(s) | 166 |
| TseFI | GTSAC | 3 cut(s) | 1157, 1321, 1332 |
| TseI | GCWGC | 2 cut(s) | 838, 1283 |
| Tsp45I | GTSAC | 3 cut(s) | 1157, 1321, 1332 |
| TspDTI | ATGAA | 9 cut(s) | 297, 381, 387, 429, 614, 782, 1178, 1236, 1378 |
| TspGWI | ACGGA | 1 cut(s) | 344 |
| TspRI | CASTG | 1 cut(s) | 166 |
| VpaK11BI | GGWCC | 1 cut(s) | 1018 |
| XapI | RAATTY | 8 cut(s) | 93, 104, 289, 507, 812, 908, 1069, 1468 |
| XbaI | TCTAGA | 1 cut(s) | 74 |
| XhoI | CTCGAG | 1 cut(s) | 487 |
| XspI | CTAG | 5 cut(s) | 75, 237, 269, 495, 1185 |
| ZrmI | AGTACT | 1 cut(s) | 493 |