FvH4_6g29400

B3 domain-containing transcription factor VRN1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000156
Physical Location & Seq
Forward (+)
22683759 .. 22684758
1000 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g29400.t1

Sequence Viewer

Length: 657 bp
ATGCAACCTTCATATGTTCAACACAATTATTTGAGTTTTCCAGCAGAGTTCCTCAAGAAAAATCAAATTAAGGATGCTGCTAATGTCATCCTTCGGGTTTCAAATGGAAAAACTTGGTATGTGAAGTTCAAATACGAAAAATCTAAAGCCATACTCCAGCATGGTTGGCTTGCATTTGTAAAGGATAATTGTCTAAAAGTTGGTGATGTGTGTGTCTTTGTCTTGGTTAAGGACATTAATCTTTTATTTCAAGTTGAATTTTTCAGAGCTACAAGCTGCTTCCCGCGGTCGGTGCTTCCAGGGCATGGTAGAGGAGCAGCTACACAAGTTGGAAATAATATAACCTCAATCAAAGTCGAACCGGATTGCAGCATGAATGGTGGTATCACTGGTATGGCTTCTATTAATCCTTCTCCTCTTGATATTGAGTTACGGATTATATTTGATAATCAATCGTCGGATTCAACTGTTACTGTAGGAGGCAGGAACAAAAGATCAGAAACTAGTGGGGAAGCTGCTAAAAGGCGTTGCTCGTCTTTGAGGGTTCCAAGTGTTAATAATGTTGAAGCTGCCAACAAGTTCTTTCCAAACAATCCCTTCTTCAAAGTCTCTCTTCGGGCTTATAACATAGAGCGCGCAAATGTGTGTACCAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

219

Amino Acids

24.22

Weight (kDa)

9.53

Isoelectric Point (pI)

48.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 2 - 90 1.7e-17 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000156)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49475 AT3G18960 AT3G18960 AT3G18960 AT4G01580
fragaria_vesca FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14670 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14690 FvH4_1g14700 FvH4_1g29250 FvH4_6g29400 FvH4_6g38681 FvH4_6g38690 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_7g02010
malus_domestica MD00G1020600.v1.1 MD00G1022000.v1.1 MD00G1022100.v1.1 MD02G1159700.v1.1 MD02G1159800.v1.1 MD02G1159900.v1.1 MD02G1160000.v1.1 MD02G1160300.v1.1 MD15G1274100.v1.1 MD15G1274200.v1.1 MD15G1274400.v1.1 MD15G1302000.v1.1
prunus_persica Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.3G083400_v2.0.a1 Prupe.6G229600_v2.0.a1 Prupe.7G039600_v2.0.a1 Prupe.7G044500_v2.0.a1 Prupe.7G044800_v2.0.a1 Prupe.7G143100_v2.0.a1 Prupe.7G143500_v2.0.a1 Prupe.7G143600_v2.0.a1 Prupe.7G143700_v2.0.a1 Prupe.7G143800_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.8G072800_v2.0.a1 Prupe.8G072800_v2.0.a1
pyrus_communis pycom02g12620 pycom02g12630 pycom15g23750 pycom15g26490 pycom17g21160
rosa_chinensis RchiOBHm_Chr2g0103421 RchiOBHm_Chr2g0103431 RchiOBHm_Chr2g0103441 RchiOBHm_Chr2g0103491 RchiOBHm_Chr2g0103501 RchiOBHm_Chr2g0103521 RchiOBHm_Chr2g0103541 RchiOBHm_Chr2g0103551 RchiOBHm_Chr2g0103561 RchiOBHm_Chr2g0134821 RchiOBHm_Chr2g0152161 RchiOBHm_Chr2g0152181 RchiOBHm_Chr7g0227261 RchiOBHm_Chr7g0227351 RchiOBHm_Chr7g0227431
rosa_laevigata RLG00000001649 RLG00000001653 RLG00000001659 RLG00000017235 RLG00000017236 RLG00000017240 RLG00000017241 RLG00000017242 RLG00000017243 RLG00000017244 RLG00000017349 RLG00000019424 RLG00000020614 RLG00000020615
rosa_multiflora Rmu_co8247875.1_g000001 Rmu_co8429551.1_g000001 Rmu_sc0000173.1_g000009 Rmu_sc0000718.1_g000004 Rmu_sc0001530.1_g000001 Rmu_sc0001530.1_g000002 Rmu_sc0001530.1_g000004 Rmu_sc0001530.1_g000005 Rmu_sc0001852.1_g000023 Rmu_sc0001852.1_g000024 Rmu_sc0002434.1_g000001 Rmu_sc0002434.1_g000002 Rmu_sc0003043.1_g000016 Rmu_sc0003153.1_g000005 Rmu_sc0011039.1_g000001 Rmu_sc0031822.1_g000001
rosa_roxburghii Rroxscaffold_2G00095860 Rroxscaffold_2G00095870 Rroxscaffold_2G00109720 Rroxscaffold_2G00139530 Rroxscaffold_2G00139550 Rroxscaffold_2G00139570 Rroxscaffold_2G00139580 Rroxscaffold_2G00139630 Rroxscaffold_2G00139640 Rroxscaffold_4G00328430 Rroxscaffold_4G00328440 Rroxscaffold_4G00328450
rosa_rugosa Rorug02G0114900 Rorug02G0115000 Rorug02G0115000 Rorug02G0115200 Rorug02G0115300 Rorug02G0115400 Rorug02G0115500 Rorug02G0115600 Rorug02G0115600 Rorug02G0115600 Rorug02G0115700 Rorug02G0320300 Rorug02G0431300 Rorug02G0431300 Rorug06G0028200 Rorug07G0241300
rosa_samantha Rh2AG163200 Rh2AG163300 Rh2AG163700 Rh2AG163800 Rh2AG163900 Rh2AG164000 Rh2AG373400 Rh2AG492600 Rh2BG170300 Rh2BG170400 Rh2BG170800 Rh2BG170900 Rh2BG171000 Rh2BG171100 Rh2BG171200 Rh2BG377800 Rh2BG505000 Rh2BG505100 Rh2BG505200 Rh2CG170300 Rh2CG170700 Rh2CG479000 Rh2DG169100 Rh2DG169200 Rh2DG169300 Rh2DG516400 Rh7AG391200 Rh7BG376200 Rh7CG410200 Rh7CG411500 Rh7CG412000 Rh7CG412700 Rh7DG388800
rosa_wichuraiana Rw2G012830 Rw2G012840 Rw2G012870 Rw2G012880 Rw2G012890 Rw2G012900 Rw2G030310 Rw2G040470 Rw2G040480 Rw7G032720 Rw7G032730 Rw7G032750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 624
AccB7I CCANNNNNTGG 1 cut(s) 305
AccII CGCG 2 cut(s) 286, 636
AciI CCGC 2 cut(s) 284, 286
AcsI RAATTY 1 cut(s) 257
AfaI GTAC 1 cut(s) 649
AfiI CCNNNNNNNGG 2 cut(s) 289, 305
AgsI TTSAA 8 cut(s) 20, 102, 130, 251, 257, 465, 566, 604
AhlI ACTAGT 1 cut(s) 503
AjnI CCWGG 1 cut(s) 298
AluBI AGCT 6 cut(s) 269, 276, 320, 515, 569, 654
AluI AGCT 6 cut(s) 269, 276, 320, 515, 569, 654
Alw26I GTCTC 1 cut(s) 613
ApeKI GCWGC 6 cut(s) 77, 276, 317, 369, 515, 569
ApoI RAATTY 1 cut(s) 257
AseI ATTAAT 2 cut(s) 237, 405
AspLEI GCGC 2 cut(s) 636, 638
AsuHPI GGTGA 1 cut(s) 215
BarI GAAGNNNNNNTAC 2 cut(s) 116, 148
BbvI GCAGC 6 cut(s) 64, 263, 329, 381, 502, 556
BciT130I CCWGG 1 cut(s) 300
BcoDI GTCTC 1 cut(s) 613
BcuI ACTAGT 1 cut(s) 503
BfaI CTAG 2 cut(s) 504, 655
BfmI CTRYAG 1 cut(s) 474
BisI GCNGC 6 cut(s) 78, 277, 318, 370, 516, 570
BlsI GCNGC 6 cut(s) 79, 278, 319, 371, 517, 571
Bme1390I CCNGG 1 cut(s) 300
BmiI GGNNCC 1 cut(s) 546
BmrFI CCNGG 1 cut(s) 300
BmsI GCATC 1 cut(s) 64
BpmI CTGGAG 1 cut(s) 140
BpuEI CTTGAG 1 cut(s) 38
BsaJI CCNNGG 2 cut(s) 284, 299
BsaWI WCCGGW 1 cut(s) 361
Bsc4I CCNNNNNNNGG 2 cut(s) 289, 305
Bse1I ACTGG 1 cut(s) 394
BseBI CCWGG 1 cut(s) 300
BseDI CCNNGG 2 cut(s) 284, 299
BseGI GGATG 2 cut(s) 79, 87
BseLI CCNNNNNNNGG 2 cut(s) 289, 305
BseNI ACTGG 1 cut(s) 394
BsePI GCGCGC 1 cut(s) 634
BseRI GAGGAG 2 cut(s) 327, 405
BseXI GCAGC 6 cut(s) 64, 263, 329, 381, 502, 556
Bsh1236I CGCG 2 cut(s) 286, 636
Bsh1285I CGRYCG 1 cut(s) 290
BsiEI CGRYCG 1 cut(s) 290
BsiSI CCGG 1 cut(s) 362
BslI CCNNNNNNNGG 2 cut(s) 289, 305
BsmAI GTCTC 1 cut(s) 613
Bsp143I GATC 1 cut(s) 494
BspACI CCGC 2 cut(s) 284, 286
BspFNI CGCG 2 cut(s) 286, 636
BspLI GGNNCC 1 cut(s) 546
BsrI ACTGG 1 cut(s) 394
BssECI CCNNGG 2 cut(s) 284, 299
BssHII GCGCGC 1 cut(s) 634
BssMI GATC 1 cut(s) 494
Bst2UI CCWGG 1 cut(s) 300
Bst4CI ACNGT 2 cut(s) 469, 475
Bst6I CTCTTC 1 cut(s) 618
BstC8I GCNNGC 2 cut(s) 171, 636
BstDSI CCRYGG 1 cut(s) 284
BstF5I GGATG 2 cut(s) 79, 87
BstFNI CGCG 2 cut(s) 286, 636
BstHHI GCGC 2 cut(s) 636, 638
BstKTI GATC 1 cut(s) 497
BstMAI GTCTC 1 cut(s) 613
BstMBI GATC 1 cut(s) 494
BstMCI CGRYCG 1 cut(s) 290
BstMWI GCNNNNNNNGC 3 cut(s) 166, 292, 301
BstNI CCWGG 1 cut(s) 300
BstSCI CCNGG 1 cut(s) 298
BstSFI CTRYAG 1 cut(s) 474
BstUI CGCG 2 cut(s) 286, 636
BstV1I GCAGC 6 cut(s) 64, 263, 329, 381, 502, 556
BtgI CCRYGG 1 cut(s) 284
BtsCI GGATG 2 cut(s) 79, 87
BtsIMutI CAGTG 1 cut(s) 387
Cac8I GCNNGC 2 cut(s) 171, 636
CfoI GCGC 2 cut(s) 636, 638
Cfr42I CCGCGG 1 cut(s) 287
Csp6I GTAC 1 cut(s) 648
CviAII CATG 3 cut(s) 161, 305, 373
CviQI GTAC 1 cut(s) 648
DpnI GATC 1 cut(s) 496
DpnII GATC 1 cut(s) 494
Eam1104I CTCTTC 1 cut(s) 618
EarI CTCTTC 1 cut(s) 618
EcoRII CCWGG 1 cut(s) 298
FaeI CATG 3 cut(s) 164, 308, 376
FalI AAGNNNNNCTT 2 cut(s) 597, 629
FatI CATG 3 cut(s) 160, 304, 372
FauI CCCGC 1 cut(s) 291
FauNDI CATATG 1 cut(s) 13
Fnu4HI GCNGC 6 cut(s) 78, 277, 318, 370, 516, 570
FokI GGATG 2 cut(s) 74, 86
Fsp4HI GCNGC 6 cut(s) 78, 277, 318, 370, 516, 570
FspBI CTAG 2 cut(s) 504, 655
GlaI GCGC 2 cut(s) 635, 637
GluI GCNGC 6 cut(s) 78, 277, 318, 370, 516, 570
GsuI CTGGAG 1 cut(s) 140
HapII CCGG 1 cut(s) 362
HhaI GCGC 2 cut(s) 636, 638
Hin1II CATG 3 cut(s) 164, 308, 376
Hin6I GCGC 2 cut(s) 634, 636
HinP1I GCGC 2 cut(s) 634, 636
HinfI GANTC 1 cut(s) 461
HpaII CCGG 1 cut(s) 362
HphI GGTGA 1 cut(s) 215
Hpy166II GTNNAC 1 cut(s) 648
Hpy188I TCNGA 3 cut(s) 266, 460, 499
Hpy188III TCNNGA 2 cut(s) 55, 419
Hpy8I GTNNAC 1 cut(s) 648
Hpy99I CGWCG 1 cut(s) 460
HpyAV CCTTC 4 cut(s) 18, 101, 420, 607
HpyCH4III ACNGT 2 cut(s) 469, 475
HpyCH4V TGCA 3 cut(s) 4, 173, 369
HpyF10VI GCNNNNNNNGC 3 cut(s) 166, 292, 301
Hsp92II CATG 3 cut(s) 164, 308, 376
HspAI GCGC 2 cut(s) 634, 636
KspI CCGCGG 1 cut(s) 287
Kzo9I GATC 1 cut(s) 494
LmnI GCTCC 1 cut(s) 314
LpnPI CCDG 7 cut(s) 54, 170, 285, 312, 375, 375, 469
Lsp1109I GCAGC 6 cut(s) 64, 263, 329, 381, 502, 556
LweI GCATC 1 cut(s) 64
MaeI CTAG 2 cut(s) 504, 655
MaeIII GTNAC 2 cut(s) 429, 469
MalI GATC 1 cut(s) 496
MboI GATC 1 cut(s) 494
MboII GAAGA 2 cut(s) 592, 605
MluCI AATT 4 cut(s) 25, 66, 187, 257
MmeI TCCRAC 2 cut(s) 310, 438
MnlI CCTC 6 cut(s) 62, 305, 355, 426, 473, 534
MseI TTAA 5 cut(s) 69, 228, 237, 405, 555
MslI CAYNNNNRTG 1 cut(s) 392
MspA1I CMGCKG 1 cut(s) 286
MspI CCGG 1 cut(s) 362
MspR9I CCNGG 1 cut(s) 300
MvaI CCWGG 1 cut(s) 300
MvnI CGCG 2 cut(s) 286, 636
MwoI GCNNNNNNNGC 3 cut(s) 166, 292, 301
NdeI CATATG 1 cut(s) 13
NdeII GATC 1 cut(s) 494
NlaIII CATG 3 cut(s) 164, 308, 376
NlaIV GGNNCC 1 cut(s) 546
PauI GCGCGC 1 cut(s) 634
PfeI GAWTC 1 cut(s) 461
PflMI CCANNNNNTGG 1 cut(s) 305
PkrI GCNGC 6 cut(s) 79, 278, 319, 371, 517, 571
PshBI ATTAAT 2 cut(s) 237, 405
PsiI TTATAA 1 cut(s) 624
Psp6I CCWGG 1 cut(s) 298
PspGI CCWGG 1 cut(s) 298
PspN4I GGNNCC 1 cut(s) 546
PsrI GAACNNNNNNTAC 2 cut(s) 110, 142
PteI GCGCGC 1 cut(s) 634
RsaI GTAC 1 cut(s) 649
RsaNI GTAC 1 cut(s) 648
RseI CAYNNNNRTG 1 cut(s) 392
SacII CCGCGG 1 cut(s) 287
SaqAI TTAA 5 cut(s) 69, 228, 237, 405, 555
SatI GCNGC 6 cut(s) 78, 277, 318, 370, 516, 570
Sau3AI GATC 1 cut(s) 494
ScrFI CCNGG 1 cut(s) 300
SetI ASST 8 cut(s) 10, 271, 278, 322, 347, 517, 571, 656
SfaNI GCATC 1 cut(s) 64
SfcI CTRYAG 1 cut(s) 474
Sfr303I CCGCGG 1 cut(s) 287
SgrBI CCGCGG 1 cut(s) 287
SmiMI CAYNNNNRTG 1 cut(s) 392
SmlI CTYRAG 1 cut(s) 53
SmoI CTYRAG 1 cut(s) 53
SpeI ACTAGT 1 cut(s) 503
Sse9I AATT 4 cut(s) 25, 66, 187, 257
SsiI CCGC 2 cut(s) 284, 286
SspMI CTAG 2 cut(s) 504, 655
StyD4I CCNGG 1 cut(s) 298
TaaI ACNGT 2 cut(s) 469, 475
TaqI TCGA 1 cut(s) 357
TasI AATT 4 cut(s) 25, 66, 187, 257
TfiI GAWTC 1 cut(s) 461
Tru1I TTAA 5 cut(s) 69, 228, 237, 405, 555
Tru9I TTAA 5 cut(s) 69, 228, 237, 405, 555
TscAI CASTG 1 cut(s) 394
TseI GCWGC 6 cut(s) 77, 276, 317, 369, 515, 569
TspDTI ATGAA 1 cut(s) 389
TspGWI ACGGA 1 cut(s) 448
TspRI CASTG 1 cut(s) 394
Van91I CCANNNNNTGG 1 cut(s) 305
VspI ATTAAT 2 cut(s) 237, 405
XapI RAATTY 1 cut(s) 257
XspI CTAG 2 cut(s) 504, 655
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.