B3 domain-containing transcription factor VRN1-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| B3 | PF02362 | 34 - 101 | 2.1e-08 | B3 DNA binding domain |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 306 |
| AccIII | TCCGGA | 1 cut(s) | 130 |
| AclWI | GGATC | 1 cut(s) | 390 |
| AcoI | YGGCCR | 1 cut(s) | 257 |
| AcsI | RAATTY | 3 cut(s) | 23, 38, 169 |
| AfaI | GTAC | 1 cut(s) | 227 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 358 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 28, 60 |
| Alw26I | GTCTC | 1 cut(s) | 298 |
| AlwI | GGATC | 1 cut(s) | 390 |
| Aor13HI | TCCGGA | 1 cut(s) | 130 |
| AoxI | GGCC | 1 cut(s) | 257 |
| ApoI | RAATTY | 3 cut(s) | 23, 38, 169 |
| AsuC2I | CCSGG | 1 cut(s) | 20 |
| AsuHPI | GGTGA | 1 cut(s) | 245 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 217, 250 |
| BalI | TGGCCA | 1 cut(s) | 259 |
| BcnI | CCSGG | 1 cut(s) | 20 |
| BcoDI | GTCTC | 1 cut(s) | 298 |
| BfaI | CTAG | 2 cut(s) | 95, 108 |
| BfuAI | ACCTGC | 1 cut(s) | 306 |
| BglII | AGATCT | 2 cut(s) | 160, 387 |
| Bme1390I | CCNGG | 1 cut(s) | 20 |
| BmiI | GGNNCC | 1 cut(s) | 46 |
| BmrFI | CCNGG | 1 cut(s) | 20 |
| BmrI | ACTGGG | 1 cut(s) | 131 |
| BmuI | ACTGGG | 1 cut(s) | 131 |
| BpuEI | CTTGAG | 1 cut(s) | 103 |
| BpuMI | CCSGG | 1 cut(s) | 20 |
| BsaWI | WCCGGW | 2 cut(s) | 33, 130 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 128, 158 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 358 |
| Bse1I | ACTGG | 2 cut(s) | 126, 326 |
| BseAI | TCCGGA | 1 cut(s) | 130 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 358 |
| BseMII | CTCAG | 1 cut(s) | 293 |
| BseNI | ACTGG | 2 cut(s) | 126, 326 |
| BseRI | GAGGAG | 1 cut(s) | 149 |
| BseYI | CCCAGC | 1 cut(s) | 48 |
| BshFI | GGCC | 1 cut(s) | 259 |
| BsiSI | CCGG | 3 cut(s) | 19, 34, 131 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 358 |
| BsmAI | GTCTC | 1 cut(s) | 298 |
| BsnI | GGCC | 1 cut(s) | 259 |
| Bsp13I | TCCGGA | 1 cut(s) | 130 |
| Bsp143I | GATC | 3 cut(s) | 160, 382, 387 |
| BspANI | GGCC | 1 cut(s) | 259 |
| BspCNI | CTCAG | 1 cut(s) | 294 |
| BspEI | TCCGGA | 1 cut(s) | 130 |
| BspLI | GGNNCC | 1 cut(s) | 46 |
| BspMI | ACCTGC | 1 cut(s) | 306 |
| BspPI | GGATC | 1 cut(s) | 390 |
| BsrI | ACTGG | 2 cut(s) | 126, 326 |
| BssMI | GATC | 3 cut(s) | 160, 382, 387 |
| BstDEI | CTNAG | 3 cut(s) | 14, 302, 391 |
| BstKTI | GATC | 3 cut(s) | 163, 385, 390 |
| BstMAI | GTCTC | 1 cut(s) | 298 |
| BstMBI | GATC | 3 cut(s) | 160, 382, 387 |
| BstSCI | CCNGG | 1 cut(s) | 18 |
| BstX2I | RGATCY | 2 cut(s) | 160, 387 |
| BstYI | RGATCY | 2 cut(s) | 160, 387 |
| BsuRI | GGCC | 1 cut(s) | 259 |
| BveI | ACCTGC | 1 cut(s) | 306 |
| Csp6I | GTAC | 1 cut(s) | 226 |
| CviAII | CATG | 1 cut(s) | 192 |
| CviJI | RGCY | 6 cut(s) | 18, 52, 187, 259, 288, 403 |
| CviKI_1 | RGCY | 6 cut(s) | 18, 52, 187, 259, 288, 403 |
| CviQI | GTAC | 1 cut(s) | 226 |
| DdeI | CTNAG | 3 cut(s) | 14, 302, 391 |
| DpnI | GATC | 3 cut(s) | 162, 384, 389 |
| DpnII | GATC | 3 cut(s) | 160, 382, 387 |
| EaeI | YGGCCR | 1 cut(s) | 257 |
| FaeI | CATG | 1 cut(s) | 195 |
| FaiI | YATR | 2 cut(s) | 153, 193 |
| FalI | AAGNNNNNCTT | 1 cut(s) | 400 |
| FatI | CATG | 1 cut(s) | 191 |
| FspBI | CTAG | 2 cut(s) | 95, 108 |
| GsaI | CCCAGC | 1 cut(s) | 52 |
| HaeIII | GGCC | 1 cut(s) | 259 |
| HapII | CCGG | 3 cut(s) | 19, 34, 131 |
| Hin1II | CATG | 1 cut(s) | 195 |
| HinfI | GANTC | 3 cut(s) | 111, 127, 412 |
| HpaII | CCGG | 3 cut(s) | 19, 34, 131 |
| HphI | GGTGA | 1 cut(s) | 245 |
| Hpy188I | TCNGA | 2 cut(s) | 202, 387 |
| Hpy188III | TCNNGA | 5 cut(s) | 82, 95, 108, 131, 268 |
| HpyAV | CCTTC | 2 cut(s) | 244, 402 |
| HpyCH4IV | ACGT | 1 cut(s) | 334 |
| HpyF3I | CTNAG | 3 cut(s) | 14, 302, 391 |
| HpySE526I | ACGT | 1 cut(s) | 334 |
| Hsp92II | CATG | 1 cut(s) | 195 |
| Kpn2I | TCCGGA | 1 cut(s) | 130 |
| Kzo9I | GATC | 3 cut(s) | 160, 382, 387 |
| LpnPI | CCDG | 9 cut(s) | 32, 47, 62, 107, 144, 273, 311, 339, 365 |
| MaeI | CTAG | 2 cut(s) | 95, 108 |
| MaeII | ACGT | 1 cut(s) | 334 |
| MaeIII | GTNAC | 2 cut(s) | 175, 394 |
| MalI | GATC | 3 cut(s) | 162, 384, 389 |
| MboI | GATC | 3 cut(s) | 160, 382, 387 |
| MflI | RGATCY | 2 cut(s) | 160, 387 |
| MlsI | TGGCCA | 1 cut(s) | 259 |
| MluCI | AATT | 3 cut(s) | 23, 38, 169 |
| MluNI | TGGCCA | 1 cut(s) | 259 |
| MlyI | GAGTC | 1 cut(s) | 120 |
| MnlI | CCTC | 2 cut(s) | 127, 229 |
| Mox20I | TGGCCA | 1 cut(s) | 259 |
| MroI | TCCGGA | 1 cut(s) | 130 |
| MscI | TGGCCA | 1 cut(s) | 259 |
| MseI | TTAA | 2 cut(s) | 117, 320 |
| Msp20I | TGGCCA | 1 cut(s) | 259 |
| MspI | CCGG | 3 cut(s) | 19, 34, 131 |
| MspR9I | CCNGG | 1 cut(s) | 20 |
| NciI | CCSGG | 1 cut(s) | 20 |
| NdeII | GATC | 3 cut(s) | 160, 382, 387 |
| NlaIII | CATG | 1 cut(s) | 195 |
| NlaIV | GGNNCC | 1 cut(s) | 46 |
| NmuCI | GTSAC | 1 cut(s) | 394 |
| PfeI | GAWTC | 1 cut(s) | 127 |
| PleI | GAGTC | 1 cut(s) | 119 |
| PpsI | GAGTC | 1 cut(s) | 119 |
| PspFI | CCCAGC | 1 cut(s) | 48 |
| PspN4I | GGNNCC | 1 cut(s) | 46 |
| PsuI | RGATCY | 2 cut(s) | 160, 387 |
| RsaI | GTAC | 1 cut(s) | 227 |
| RsaNI | GTAC | 1 cut(s) | 226 |
| SaqAI | TTAA | 2 cut(s) | 117, 320 |
| Sau3AI | GATC | 3 cut(s) | 160, 382, 387 |
| SchI | GAGTC | 1 cut(s) | 120 |
| ScrFI | CCNGG | 1 cut(s) | 20 |
| SetI | ASST | 6 cut(s) | 227, 240, 300, 320, 337, 363 |
| SmlI | CTYRAG | 1 cut(s) | 82 |
| SmoI | CTYRAG | 1 cut(s) | 82 |
| Sse9I | AATT | 3 cut(s) | 23, 38, 169 |
| SspMI | CTAG | 2 cut(s) | 95, 108 |
| StyD4I | CCNGG | 1 cut(s) | 18 |
| TaiI | ACGT | 1 cut(s) | 337 |
| TaqI | TCGA | 2 cut(s) | 269, 348 |
| TasI | AATT | 3 cut(s) | 23, 38, 169 |
| TfiI | GAWTC | 1 cut(s) | 127 |
| Tru1I | TTAA | 2 cut(s) | 117, 320 |
| Tru9I | TTAA | 2 cut(s) | 117, 320 |
| TseFI | GTSAC | 1 cut(s) | 394 |
| Tsp45I | GTSAC | 1 cut(s) | 394 |
| XapI | RAATTY | 3 cut(s) | 23, 38, 169 |
| XbaI | TCTAGA | 2 cut(s) | 94, 107 |
| XspI | CTAG | 2 cut(s) | 95, 108 |