B3 domain-containing
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| B3 | PF02362 | 16 - 107 | 5.1e-14 | B3 DNA binding domain |
| B3 | PF02362 | 220 - 306 | 2.7e-16 | B3 DNA binding domain |
| B3 | PF02362 | 398 - 474 | 4.3e-10 | B3 DNA binding domain |
| B3 | PF02362 | 517 - 602 | 1.1e-15 | B3 DNA binding domain |
| B3 | PF02362 | 745 - 834 | 3.2e-17 | B3 DNA binding domain |
| B3 | PF02362 | 929 - 1021 | 6.5e-08 | B3 DNA binding domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 3 cut(s) | 1078, 1320, 2686 |
| AccB1I | GGYRCC | 1 cut(s) | 260 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 980, 2555 |
| AciI | CCGC | 1 cut(s) | 1189 |
| AclI | AACGTT | 1 cut(s) | 1788 |
| AclWI | GGATC | 1 cut(s) | 1657 |
| AcoI | YGGCCR | 4 cut(s) | 13, 224, 1709, 2417 |
| AcuI | CTGAAG | 2 cut(s) | 1256, 2873 |
| AfaI | GTAC | 1 cut(s) | 1218 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 980, 1836, 2555 |
| AflII | CTTAAG | 3 cut(s) | 149, 734, 1634 |
| AflIII | ACRYGT | 2 cut(s) | 1564, 1989 |
| AjiI | CACGTC | 2 cut(s) | 1567, 1990 |
| AjnI | CCWGG | 5 cut(s) | 973, 1536, 2086, 2143, 2548 |
| Alw21I | GWGCWC | 2 cut(s) | 1404, 1426 |
| Alw26I | GTCTC | 5 cut(s) | 681, 721, 1555, 2296, 2773 |
| Alw44I | GTGCAC | 1 cut(s) | 1422 |
| AlwI | GGATC | 1 cut(s) | 1657 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2528 |
| ApaLI | GTGCAC | 1 cut(s) | 1422 |
| ApeKI | GCWGC | 7 cut(s) | 670, 739, 1142, 1497, 2248, 2528, 2753 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1976, 2008 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 930 |
| AspS9I | GGNCC | 1 cut(s) | 2709 |
| AsuC2I | CCSGG | 2 cut(s) | 1484, 2733 |
| AsuHPI | GGTGA | 8 cut(s) | 402, 953, 1757, 2090, 2465, 2538, 2709, 2735 |
| AsuNHI | GCTAGC | 1 cut(s) | 1223 |
| BaeGI | GKGCMC | 1 cut(s) | 1426 |
| BalI | TGGCCA | 2 cut(s) | 226, 2419 |
| BanI | GGYRCC | 1 cut(s) | 260 |
| BanII | GRGCYC | 3 cut(s) | 1019, 1351, 1404 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 369, 401 |
| BbsI | GAAGAC | 2 cut(s) | 1967, 2690 |
| Bbv12I | GWGCWC | 2 cut(s) | 1404, 1426 |
| BbvI | GCAGC | 7 cut(s) | 682, 726, 1129, 1484, 2260, 2515, 2740 |
| BccI | CCATC | 9 cut(s) | 509, 655, 658, 767, 1840, 2293, 2342, 2944, 3022 |
| BceAI | ACGGC | 1 cut(s) | 658 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1491, 1525 |
| BciT130I | CCWGG | 5 cut(s) | 975, 1538, 2088, 2145, 2550 |
| BciVI | GTATCC | 2 cut(s) | 61, 1836 |
| BclI | TGATCA | 2 cut(s) | 805, 997 |
| BcnI | CCSGG | 2 cut(s) | 1484, 2733 |
| BcoDI | GTCTC | 5 cut(s) | 681, 721, 1555, 2296, 2773 |
| BfaI | CTAG | 8 cut(s) | 75, 237, 251, 269, 1224, 1754, 2115, 2841 |
| BfmI | CTRYAG | 1 cut(s) | 609 |
| BfrI | CTTAAG | 3 cut(s) | 149, 734, 1634 |
| BfuAI | ACCTGC | 3 cut(s) | 1078, 1320, 2686 |
| BfuI | GTATCC | 2 cut(s) | 61, 1836 |
| BglII | AGATCT | 1 cut(s) | 127 |
| BisI | GCNGC | 7 cut(s) | 671, 740, 1143, 1498, 2249, 2529, 2754 |
| BlsI | GCNGC | 7 cut(s) | 672, 741, 1144, 1499, 2250, 2530, 2755 |
| Bme1390I | CCNGG | 7 cut(s) | 975, 1484, 1538, 2088, 2145, 2550, 2733 |
| BmgBI | CACGTC | 2 cut(s) | 1567, 1990 |
| BmgT120I | GGNCC | 1 cut(s) | 2709 |
| BmiI | GGNNCC | 4 cut(s) | 262, 1016, 1308, 2025 |
| BmrFI | CCNGG | 7 cut(s) | 975, 1484, 1538, 2088, 2145, 2550, 2733 |
| BmsI | GCATC | 4 cut(s) | 182, 370, 1059, 2066 |
| BmtI | GCTAGC | 1 cut(s) | 1227 |
| BpiI | GAAGAC | 2 cut(s) | 1967, 2690 |
| BpmI | CTGGAG | 1 cut(s) | 83 |
| BpuEI | CTTGAG | 2 cut(s) | 1926, 2039 |
| BpuMI | CCSGG | 2 cut(s) | 1484, 2733 |
| BsaAI | YACGTR | 1 cut(s) | 713 |
| BsaJI | CCNNGG | 3 cut(s) | 974, 2101, 2144 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2972, 3002 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 980, 1836, 2555 |
| Bse1I | ACTGG | 5 cut(s) | 1505, 2597, 2668, 2692, 2707 |
| Bse3DI | GCAATG | 4 cut(s) | 202, 916, 1687, 2047 |
| BseBI | CCWGG | 5 cut(s) | 975, 1538, 2088, 2145, 2550 |
| BseDI | CCNNGG | 3 cut(s) | 974, 2101, 2144 |
| BseGI | GGATG | 6 cut(s) | 585, 886, 1074, 1555, 2353, 3037 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 980, 1836, 2555 |
| BseMI | GCAATG | 4 cut(s) | 202, 916, 1687, 2047 |
| BseMII | CTCAG | 5 cut(s) | 308, 591, 1806, 2112, 2784 |
| BseNI | ACTGG | 5 cut(s) | 1505, 2597, 2668, 2692, 2707 |
| BseRI | GAGGAG | 1 cut(s) | 2993 |
| BseSI | GKGCMC | 1 cut(s) | 1426 |
| BseXI | GCAGC | 7 cut(s) | 682, 726, 1129, 1484, 2260, 2515, 2740 |
| BseYI | CCCAGC | 2 cut(s) | 1901, 2961 |
| BsgI | GTGCAG | 2 cut(s) | 2412, 2714 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1495 |
| BshNI | GGYRCC | 1 cut(s) | 260 |
| BsiEI | CGRYCG | 1 cut(s) | 1495 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1404, 1426 |
| BsiSI | CCGG | 4 cut(s) | 16, 1483, 1712, 2732 |
| BslFI | GGGAC | 3 cut(s) | 872, 1166, 2978 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 980, 1836, 2555 |
| BsmAI | GTCTC | 5 cut(s) | 681, 721, 1555, 2296, 2773 |
| BsmBI | CGTCTC | 1 cut(s) | 681 |
| BsmFI | GGGAC | 3 cut(s) | 872, 1166, 2978 |
| BsmI | GAATGC | 2 cut(s) | 1102, 1578 |
| Bsp1286I | GDGCHC | 4 cut(s) | 1019, 1351, 1404, 1426 |
| Bsp1407I | TGTACA | 1 cut(s) | 1216 |
| Bsp143I | GATC | 6 cut(s) | 127, 805, 997, 1286, 1492, 1649 |
| BspACI | CCGC | 1 cut(s) | 1189 |
| BspCNI | CTCAG | 5 cut(s) | 307, 592, 1807, 2113, 2783 |
| BspHI | TCATGA | 1 cut(s) | 2383 |
| BspLI | GGNNCC | 4 cut(s) | 262, 1016, 1308, 2025 |
| BspMI | ACCTGC | 3 cut(s) | 1078, 1320, 2686 |
| BspOI | GCTAGC | 1 cut(s) | 1227 |
| BspPI | GGATC | 1 cut(s) | 1657 |
| BspQI | GCTCTTC | 1 cut(s) | 621 |
| BspT107I | GGYRCC | 1 cut(s) | 260 |
| BspTI | CTTAAG | 3 cut(s) | 149, 734, 1634 |
| BsrDI | GCAATG | 4 cut(s) | 202, 916, 1687, 2047 |
| BsrGI | TGTACA | 1 cut(s) | 1216 |
| BsrI | ACTGG | 5 cut(s) | 1505, 2597, 2668, 2692, 2707 |
| BssECI | CCNNGG | 3 cut(s) | 974, 2101, 2144 |
| BssMI | GATC | 6 cut(s) | 127, 805, 997, 1286, 1492, 1649 |
| Bst2UI | CCWGG | 5 cut(s) | 975, 1538, 2088, 2145, 2550 |
| Bst4CI | ACNGT | 6 cut(s) | 260, 1264, 2102, 2329, 2483, 2926 |
| Bst6I | CTCTTC | 3 cut(s) | 621, 1002, 2719 |
| BstAFI | CTTAAG | 3 cut(s) | 149, 734, 1634 |
| BstAUI | TGTACA | 1 cut(s) | 1216 |
| BstBAI | YACGTR | 1 cut(s) | 713 |
| BstC8I | GCNNGC | 4 cut(s) | 744, 1225, 1327, 2322 |
| BstDEI | CTNAG | 6 cut(s) | 294, 600, 761, 1815, 2121, 2770 |
| BstDSI | CCRYGG | 1 cut(s) | 2101 |
| BstF5I | GGATG | 6 cut(s) | 585, 886, 1074, 1555, 2353, 3037 |
| BstKTI | GATC | 6 cut(s) | 130, 808, 1000, 1289, 1495, 1652 |
| BstMAI | GTCTC | 5 cut(s) | 681, 721, 1555, 2296, 2773 |
| BstMBI | GATC | 6 cut(s) | 127, 805, 997, 1286, 1492, 1649 |
| BstMCI | CGRYCG | 1 cut(s) | 1495 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 459, 752, 1355, 2115, 2846 |
| BstNI | CCWGG | 5 cut(s) | 975, 1538, 2088, 2145, 2550 |
| BstSCI | CCNGG | 7 cut(s) | 973, 1482, 1536, 2086, 2143, 2548, 2731 |
| BstSFI | CTRYAG | 1 cut(s) | 609 |
| BstSLI | GKGCMC | 1 cut(s) | 1426 |
| BstV1I | GCAGC | 7 cut(s) | 682, 726, 1129, 1484, 2260, 2515, 2740 |
| BstV2I | GAAGAC | 2 cut(s) | 1967, 2690 |
| BstX2I | RGATCY | 2 cut(s) | 127, 1649 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 692 |
| BstYI | RGATCY | 2 cut(s) | 127, 1649 |
| BsuI | GTATCC | 2 cut(s) | 61, 1836 |
| BtgI | CCRYGG | 1 cut(s) | 2101 |
| BtgZI | GCGATG | 1 cut(s) | 2637 |
| BtrI | CACGTC | 2 cut(s) | 1567, 1990 |
| BtsCI | GGATG | 6 cut(s) | 585, 886, 1074, 1555, 2353, 3037 |
| BtsIMutI | CAGTG | 4 cut(s) | 1424, 1812, 2007, 2118 |
| BveI | ACCTGC | 3 cut(s) | 1078, 1320, 2686 |
| Cac8I | GCNNGC | 4 cut(s) | 744, 1225, 1327, 2322 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2528 |
| CciI | TCATGA | 1 cut(s) | 2383 |
| Cfr13I | GGNCC | 1 cut(s) | 2709 |
| Csp6I | GTAC | 1 cut(s) | 1217 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 316, 351, 1801, 1836 |
| CviAII | CATG | 8 cut(s) | 1156, 1290, 1468, 1935, 2245, 2384, 2555, 2747 |
| CviQI | GTAC | 1 cut(s) | 1217 |
| DdeI | CTNAG | 6 cut(s) | 294, 600, 761, 1815, 2121, 2770 |
| DpnI | GATC | 6 cut(s) | 129, 807, 999, 1288, 1494, 1651 |
| DpnII | GATC | 6 cut(s) | 127, 805, 997, 1286, 1492, 1649 |
| DraI | TTTAAA | 2 cut(s) | 1374, 2133 |
| EaeI | YGGCCR | 4 cut(s) | 13, 224, 1709, 2417 |
| Eam1104I | CTCTTC | 3 cut(s) | 621, 1002, 2719 |
| EarI | CTCTTC | 3 cut(s) | 621, 1002, 2719 |
| Ecl136II | GAGCTC | 1 cut(s) | 1402 |
| Eco147I | AGGCCT | 1 cut(s) | 535 |
| Eco24I | GRGCYC | 3 cut(s) | 1019, 1351, 1404 |
| Eco32I | GATATC | 1 cut(s) | 281 |
| Eco53kI | GAGCTC | 1 cut(s) | 1402 |
| Eco57I | CTGAAG | 2 cut(s) | 1256, 2873 |
| EcoICRI | GAGCTC | 1 cut(s) | 1402 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2709 |
| EcoRI | GAATTC | 4 cut(s) | 289, 436, 1774, 1781 |
| EcoRII | CCWGG | 5 cut(s) | 973, 1536, 2086, 2143, 2548 |
| EcoRV | GATATC | 1 cut(s) | 281 |
| EcoT38I | GRGCYC | 3 cut(s) | 1019, 1351, 1404 |
| Esp3I | CGTCTC | 1 cut(s) | 681 |
| FaeI | CATG | 8 cut(s) | 1159, 1293, 1471, 1938, 2248, 2387, 2558, 2750 |
| FaqI | GGGAC | 3 cut(s) | 872, 1166, 2978 |
| FatI | CATG | 8 cut(s) | 1155, 1289, 1467, 1934, 2244, 2383, 2554, 2746 |
| FauNDI | CATATG | 1 cut(s) | 2811 |
| FbaI | TGATCA | 2 cut(s) | 805, 997 |
| Fnu4HI | GCNGC | 7 cut(s) | 671, 740, 1143, 1498, 2249, 2529, 2754 |
| FokI | GGATG | 6 cut(s) | 592, 893, 1081, 1562, 2360, 3044 |
| FriOI | GRGCYC | 3 cut(s) | 1019, 1351, 1404 |
| Fsp4HI | GCNGC | 7 cut(s) | 671, 740, 1143, 1498, 2249, 2529, 2754 |
| FspBI | CTAG | 8 cut(s) | 75, 237, 251, 269, 1224, 1754, 2115, 2841 |
| GluI | GCNGC | 7 cut(s) | 671, 740, 1143, 1498, 2249, 2529, 2754 |
| GsaI | CCCAGC | 2 cut(s) | 1905, 2965 |
| GsuI | CTGGAG | 1 cut(s) | 83 |
| HapII | CCGG | 4 cut(s) | 16, 1483, 1712, 2732 |
| Hin1II | CATG | 8 cut(s) | 1159, 1293, 1471, 1938, 2248, 2387, 2558, 2750 |
| HindIII | AAGCTT | 4 cut(s) | 152, 1268, 1637, 1944 |
| HpaII | CCGG | 4 cut(s) | 16, 1483, 1712, 2732 |
| HphI | GGTGA | 8 cut(s) | 402, 953, 1757, 2090, 2465, 2538, 2709, 2735 |
| Hpy166II | GTNNAC | 4 cut(s) | 1424, 1435, 2005, 3055 |
| Hpy8I | GTNNAC | 4 cut(s) | 1424, 1435, 2005, 3055 |
| Hpy99I | CGWCG | 1 cut(s) | 1991 |
| HpyAV | CCTTC | 8 cut(s) | 274, 423, 976, 1373, 1763, 2345, 2581, 2700 |
| HpyCH4III | ACNGT | 6 cut(s) | 260, 1264, 2102, 2329, 2483, 2926 |
| HpyCH4IV | ACGT | 5 cut(s) | 712, 1566, 1788, 1989, 2389 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 459, 752, 1355, 2115, 2846 |
| HpyF3I | CTNAG | 6 cut(s) | 294, 600, 761, 1815, 2121, 2770 |
| HpySE526I | ACGT | 5 cut(s) | 712, 1566, 1788, 1989, 2389 |
| Hsp92II | CATG | 8 cut(s) | 1159, 1293, 1471, 1938, 2248, 2387, 2558, 2750 |
| Ksp22I | TGATCA | 2 cut(s) | 805, 997 |
| Kzo9I | GATC | 6 cut(s) | 127, 805, 997, 1286, 1492, 1649 |
| LguI | GCTCTTC | 1 cut(s) | 621 |
| LmnI | GCTCC | 2 cut(s) | 1014, 1677 |
| Lsp1109I | GCAGC | 7 cut(s) | 682, 726, 1129, 1484, 2260, 2515, 2740 |
| LweI | GCATC | 4 cut(s) | 182, 370, 1059, 2066 |
| MaeI | CTAG | 8 cut(s) | 75, 237, 251, 269, 1224, 1754, 2115, 2841 |
| MaeII | ACGT | 5 cut(s) | 712, 1566, 1788, 1989, 2389 |
| MalI | GATC | 6 cut(s) | 129, 807, 999, 1288, 1494, 1651 |
| MboI | GATC | 6 cut(s) | 127, 805, 997, 1286, 1492, 1649 |
| MfeI | CAATTG | 1 cut(s) | 2369 |
| MflI | RGATCY | 2 cut(s) | 127, 1649 |
| MhlI | GDGCHC | 4 cut(s) | 1019, 1351, 1404, 1426 |
| MlsI | TGGCCA | 2 cut(s) | 226, 2419 |
| MluNI | TGGCCA | 2 cut(s) | 226, 2419 |
| MlyI | GAGTC | 4 cut(s) | 401, 552, 1516, 3003 |
| MmeI | TCCRAC | 2 cut(s) | 1140, 2977 |
| Mox20I | TGGCCA | 2 cut(s) | 226, 2419 |
| MroXI | GAANNNNTTC | 1 cut(s) | 930 |
| MscI | TGGCCA | 2 cut(s) | 226, 2419 |
| MslI | CAYNNNNRTG | 4 cut(s) | 690, 1409, 1933, 2388 |
| Msp20I | TGGCCA | 2 cut(s) | 226, 2419 |
| MspA1I | CMGCKG | 1 cut(s) | 2825 |
| MspCI | CTTAAG | 3 cut(s) | 149, 734, 1634 |
| MspI | CCGG | 4 cut(s) | 16, 1483, 1712, 2732 |
| MspR9I | CCNGG | 7 cut(s) | 975, 1484, 1538, 2088, 2145, 2550, 2733 |
| MunI | CAATTG | 1 cut(s) | 2369 |
| Mva1269I | GAATGC | 2 cut(s) | 1102, 1578 |
| MvaI | CCWGG | 5 cut(s) | 975, 1538, 2088, 2145, 2550 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 459, 752, 1355, 2115, 2846 |
| NciI | CCSGG | 2 cut(s) | 1484, 2733 |
| NdeI | CATATG | 1 cut(s) | 2811 |
| NdeII | GATC | 6 cut(s) | 127, 805, 997, 1286, 1492, 1649 |
| NheI | GCTAGC | 1 cut(s) | 1223 |
| NlaIII | CATG | 8 cut(s) | 1159, 1293, 1471, 1938, 2248, 2387, 2558, 2750 |
| NlaIV | GGNNCC | 4 cut(s) | 262, 1016, 1308, 2025 |
| NmuCI | GTSAC | 9 cut(s) | 77, 843, 1090, 1669, 2329, 2518, 2544, 2791, 2893 |
| PacI | TTAATTAA | 1 cut(s) | 2478 |
| PagI | TCATGA | 1 cut(s) | 2383 |
| PceI | AGGCCT | 1 cut(s) | 535 |
| PciSI | GCTCTTC | 1 cut(s) | 621 |
| PctI | GAATGC | 2 cut(s) | 1102, 1578 |
| PdmI | GAANNNNTTC | 1 cut(s) | 930 |
| PfeI | GAWTC | 7 cut(s) | 568, 1034, 1165, 1622, 2403, 2612, 2776 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 980, 2555 |
| PfoI | TCCNGGA | 1 cut(s) | 2731 |
| PkrI | GCNGC | 7 cut(s) | 672, 741, 1144, 1499, 2250, 2530, 2755 |
| Ple19I | CGATCG | 1 cut(s) | 1495 |
| PleI | GAGTC | 4 cut(s) | 401, 551, 1516, 3002 |
| PpsI | GAGTC | 4 cut(s) | 401, 551, 1516, 3002 |
| Ppu21I | YACGTR | 1 cut(s) | 713 |
| Psp124BI | GAGCTC | 1 cut(s) | 1404 |
| Psp1406I | AACGTT | 1 cut(s) | 1788 |
| Psp6I | CCWGG | 5 cut(s) | 973, 1536, 2086, 2143, 2548 |
| PspFI | CCCAGC | 2 cut(s) | 1901, 2961 |
| PspGI | CCWGG | 5 cut(s) | 973, 1536, 2086, 2143, 2548 |
| PspN4I | GGNNCC | 4 cut(s) | 262, 1016, 1308, 2025 |
| PspPI | GGNCC | 1 cut(s) | 2709 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1290, 1322 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2528 |
| PsuI | RGATCY | 2 cut(s) | 127, 1649 |
| PvuI | CGATCG | 1 cut(s) | 1495 |
| PvuII | CAGCTG | 1 cut(s) | 2825 |
| RsaI | GTAC | 1 cut(s) | 1218 |
| RsaNI | GTAC | 1 cut(s) | 1217 |
| RseI | CAYNNNNRTG | 4 cut(s) | 690, 1409, 1933, 2388 |
| SacI | GAGCTC | 1 cut(s) | 1404 |
| SapI | GCTCTTC | 1 cut(s) | 621 |
| SatI | GCNGC | 7 cut(s) | 671, 740, 1143, 1498, 2249, 2529, 2754 |
| Sau3AI | GATC | 6 cut(s) | 127, 805, 997, 1286, 1492, 1649 |
| Sau96I | GGNCC | 1 cut(s) | 2709 |
| SchI | GAGTC | 4 cut(s) | 401, 552, 1516, 3003 |
| ScrFI | CCNGG | 7 cut(s) | 975, 1484, 1538, 2088, 2145, 2550, 2733 |
| SduI | GDGCHC | 4 cut(s) | 1019, 1351, 1404, 1426 |
| SfaNI | GCATC | 4 cut(s) | 182, 370, 1059, 2066 |
| SfcI | CTRYAG | 1 cut(s) | 609 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 690, 1409, 1933, 2388 |
| SmlI | CTYRAG | 5 cut(s) | 149, 734, 1634, 1941, 2018 |
| SmoI | CTYRAG | 5 cut(s) | 149, 734, 1634, 1941, 2018 |
| SseBI | AGGCCT | 1 cut(s) | 535 |
| SsiI | CCGC | 1 cut(s) | 1189 |
| SspI | AATATT | 1 cut(s) | 1604 |
| SspMI | CTAG | 8 cut(s) | 75, 237, 251, 269, 1224, 1754, 2115, 2841 |
| SstI | GAGCTC | 1 cut(s) | 1404 |
| StuI | AGGCCT | 1 cut(s) | 535 |
| StyD4I | CCNGG | 7 cut(s) | 973, 1482, 1536, 2086, 2143, 2548, 2731 |
| TaaI | ACNGT | 6 cut(s) | 260, 1264, 2102, 2329, 2483, 2926 |
| TaiI | ACGT | 5 cut(s) | 715, 1569, 1791, 1992, 2392 |
| TaqI | TCGA | 7 cut(s) | 530, 826, 1005, 1351, 1559, 1970, 2681 |
| TatI | WGTACW | 1 cut(s) | 1216 |
| TfiI | GAWTC | 7 cut(s) | 568, 1034, 1165, 1622, 2403, 2612, 2776 |
| TscAI | CASTG | 4 cut(s) | 1431, 1819, 2014, 2125 |
| TseFI | GTSAC | 9 cut(s) | 77, 843, 1090, 1669, 2329, 2518, 2544, 2791, 2893 |
| TseI | GCWGC | 7 cut(s) | 670, 739, 1142, 1497, 2248, 2528, 2753 |
| Tsp45I | GTSAC | 9 cut(s) | 77, 843, 1090, 1669, 2329, 2518, 2544, 2791, 2893 |
| TspRI | CASTG | 4 cut(s) | 1431, 1819, 2014, 2125 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 980, 2555 |
| Vha464I | CTTAAG | 3 cut(s) | 149, 734, 1634 |
| VneI | GTGCAC | 1 cut(s) | 1422 |
| XbaI | TCTAGA | 1 cut(s) | 250 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 569 |
| XmnI | GAANNNNTTC | 1 cut(s) | 930 |
| XspI | CTAG | 8 cut(s) | 75, 237, 251, 269, 1224, 1754, 2115, 2841 |