Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000156

Physical Location & Seq

Genomic Coordinates Reverse (-)

15039285 .. 15040513

Gene Structure 1229 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ47792

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGTGTTGTATTAAATGGAATAATATGATAGCTGTAGGAGGTTTGGATGTGTTGGAGAATACAATCCCAAACCAGAAATCTAAGCATTGCAAATTTTGGAAAATTCCAAAGAAATTTGTGAAGAGATATGGAGAACATCTCTCAAATTCAGTATGTCTTAAGATCCCAAGTGGTTGTGAATGGGAAGTGGGAGTGACGCGAAGCGGCAATAAGGTTTGGTTTGAGAAGGGCTGGCCTGCATTCTCTAAATTTTACTCCCTAGACTACGGTGCCTTCTTACTTTTTGGATATGAAGGGAATTCTAAATTCCAGGTTTGTATATTTGATACTAGTGCCACAGAGATTGCCTATCCCGTCCATATAGAAGAATCTGATAACATTAATTGTGAAGATGACAACTCTGTCGAAGTCCCGGACGATTTCCCACATTCCTGCCCAAAAACAAGGGAGAAATCTCCATTACCATCTCCTAGGCCTCACAAGAGAAGAAGAATAAGTTCAAATAGTAAAGAAAATTTTCAAGGTATGGAATGCATATTTGATAGTTTATTTATGTGTAAATATATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

189

Amino Acids

21.77

Weight (kDa)

8.0

Isoelectric Point (pI)

49.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	24 - 110	3.1e-14	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000156)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49475 AT3G18960 AT3G18960 AT3G18960 AT4G01580
fragaria_vesca	FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14650 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14660 FvH4_1g14670 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14680 FvH4_1g14690 FvH4_1g14700 FvH4_1g29250 FvH4_6g29400 FvH4_6g38681 FvH4_6g38690 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_6g38700 FvH4_7g02010
malus_domestica	MD00G1020600.v1.1 MD00G1022000.v1.1 MD00G1022100.v1.1 MD02G1159700.v1.1 MD02G1159800.v1.1 MD02G1159900.v1.1 MD02G1160000.v1.1 MD02G1160300.v1.1 MD15G1274100.v1.1 MD15G1274200.v1.1 MD15G1274400.v1.1 MD15G1302000.v1.1
prunus_persica	Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.1G579400_v2.0.a1 Prupe.3G083400_v2.0.a1 Prupe.6G229600_v2.0.a1 Prupe.7G039600_v2.0.a1 Prupe.7G044500_v2.0.a1 Prupe.7G044800_v2.0.a1 Prupe.7G143100_v2.0.a1 Prupe.7G143500_v2.0.a1 Prupe.7G143600_v2.0.a1 Prupe.7G143700_v2.0.a1 Prupe.7G143800_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.7G143900_v2.0.a1 Prupe.8G072800_v2.0.a1 Prupe.8G072800_v2.0.a1
pyrus_communis	pycom02g12620 pycom02g12630 pycom15g23750 pycom15g26490 pycom17g21160
rosa_chinensis	RchiOBHm_Chr2g0103421 RchiOBHm_Chr2g0103431 RchiOBHm_Chr2g0103441 RchiOBHm_Chr2g0103491 RchiOBHm_Chr2g0103501 RchiOBHm_Chr2g0103521 RchiOBHm_Chr2g0103541 RchiOBHm_Chr2g0103551 RchiOBHm_Chr2g0103561 RchiOBHm_Chr2g0134821 RchiOBHm_Chr2g0152161 RchiOBHm_Chr2g0152181 RchiOBHm_Chr7g0227261 RchiOBHm_Chr7g0227351 RchiOBHm_Chr7g0227431
rosa_laevigata	RLG00000001649 RLG00000001653 RLG00000001659 RLG00000017235 RLG00000017236 RLG00000017240 RLG00000017241 RLG00000017242 RLG00000017243 RLG00000017244 RLG00000017349 RLG00000019424 RLG00000020614 RLG00000020615
rosa_multiflora	Rmu_co8247875.1_g000001 Rmu_co8429551.1_g000001 Rmu_sc0000173.1_g000009 Rmu_sc0000718.1_g000004 Rmu_sc0001530.1_g000001 Rmu_sc0001530.1_g000002 Rmu_sc0001530.1_g000004 Rmu_sc0001530.1_g000005 Rmu_sc0001852.1_g000023 Rmu_sc0001852.1_g000024 Rmu_sc0002434.1_g000001 Rmu_sc0002434.1_g000002 Rmu_sc0003043.1_g000016 Rmu_sc0003153.1_g000005 Rmu_sc0011039.1_g000001 Rmu_sc0031822.1_g000001
rosa_roxburghii	Rroxscaffold_2G00095860 Rroxscaffold_2G00095870 Rroxscaffold_2G00109720 Rroxscaffold_2G00139530 Rroxscaffold_2G00139550 Rroxscaffold_2G00139570 Rroxscaffold_2G00139580 Rroxscaffold_2G00139630 Rroxscaffold_2G00139640 Rroxscaffold_4G00328430 Rroxscaffold_4G00328440 Rroxscaffold_4G00328450
rosa_rugosa	Rorug02G0114900 Rorug02G0115000 Rorug02G0115000 Rorug02G0115200 Rorug02G0115300 Rorug02G0115400 Rorug02G0115500 Rorug02G0115600 Rorug02G0115600 Rorug02G0115600 Rorug02G0115700 Rorug02G0320300 Rorug02G0431300 Rorug02G0431300 Rorug06G0028200 Rorug07G0241300
rosa_samantha	Rh2AG163200 Rh2AG163300 Rh2AG163700 Rh2AG163800 Rh2AG163900 Rh2AG164000 Rh2AG373400 Rh2AG492600 Rh2BG170300 Rh2BG170400 Rh2BG170800 Rh2BG170900 Rh2BG171000 Rh2BG171100 Rh2BG171200 Rh2BG377800 Rh2BG505000 Rh2BG505100 Rh2BG505200 Rh2CG170300 Rh2CG170700 Rh2CG479000 Rh2DG169100 Rh2DG169200 Rh2DG169300 Rh2DG516400 Rh7AG391200 Rh7BG376200 Rh7CG410200 Rh7CG411500 Rh7CG412000 Rh7CG412700 Rh7DG388800
rosa_wichuraiana	Rw2G012830 Rw2G012840 Rw2G012870 Rw2G012880 Rw2G012890 Rw2G012900 Rw2G030310 Rw2G040470 Rw2G040480 Rw7G032720 Rw7G032730 Rw7G032750

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	401
AccB1I	GGYRCC	1 cut(s)	269
AccII	CGCG	1 cut(s)	199
AciI	CCGC	1 cut(s)	204
AclWI	GGATC	1 cut(s)	157
AcsI	RAATTY	8 cut(s)	92, 102, 113, 145, 248, 298, 305, 514
AflII	CTTAAG	1 cut(s)	158
AgsI	TTSAA	2 cut(s)	501, 521
AhlI	ACTAGT	1 cut(s)	329
AjnI	CCWGG	1 cut(s)	309
AluBI	AGCT	1 cut(s)	32
AluI	AGCT	1 cut(s)	32
AlwI	GGATC	1 cut(s)	157
AoxI	GGCC	2 cut(s)	233, 473
ApoI	RAATTY	8 cut(s)	92, 102, 113, 145, 248, 298, 305, 514
AseI	ATTAAT	1 cut(s)	381
Asp700I	GAANNNNTTC	2 cut(s)	496, 516
AspA2I	CCTAGG	1 cut(s)	470
AsuC2I	CCSGG	1 cut(s)	413
AvrII	CCTAGG	1 cut(s)	470
BanI	GGYRCC	1 cut(s)	269
BccI	CCATC	1 cut(s)	472
BciT130I	CCWGG	1 cut(s)	311
BcnI	CCSGG	1 cut(s)	413
BcuI	ACTAGT	1 cut(s)	329
BfaI	CTAG	3 cut(s)	260, 330, 471
BfmI	CTRYAG	1 cut(s)	33
BfrI	CTTAAG	1 cut(s)	158
BisI	GCNGC	1 cut(s)	205
BlnI	CCTAGG	1 cut(s)	470
BlsI	GCNGC	1 cut(s)	206
Bme1390I	CCNGG	2 cut(s)	311, 413
BmiI	GGNNCC	1 cut(s)	271
BmrFI	CCNGG	2 cut(s)	311, 413
BplI	GAGNNNNNCTC	2 cut(s)	123, 155
BpuMI	CCSGG	1 cut(s)	413
BsaJI	CCNNGG	1 cut(s)	470
Bse3DI	GCAATG	1 cut(s)	85
BseBI	CCWGG	1 cut(s)	311
BseDI	CCNNGG	1 cut(s)	470
BseGI	GGATG	1 cut(s)	52
BseMI	GCAATG	1 cut(s)	85
Bsh1236I	CGCG	1 cut(s)	199
BshFI	GGCC	2 cut(s)	235, 475
BshNI	GGYRCC	1 cut(s)	269
BsiSI	CCGG	1 cut(s)	413
BslFI	GGGAC	1 cut(s)	395
BsmFI	GGGAC	1 cut(s)	395
BsmI	GAATGC	2 cut(s)	239, 536
BsnI	GGCC	2 cut(s)	235, 475
Bsp143I	GATC	1 cut(s)	162
BspACI	CCGC	1 cut(s)	204
BspANI	GGCC	2 cut(s)	235, 475
BspFNI	CGCG	1 cut(s)	199
BspLI	GGNNCC	1 cut(s)	271
BspPI	GGATC	1 cut(s)	157
BspT107I	GGYRCC	1 cut(s)	269
BspTI	CTTAAG	1 cut(s)	158
BsrDI	GCAATG	1 cut(s)	85
BssECI	CCNNGG	1 cut(s)	470
BssMI	GATC	1 cut(s)	162
BssT1I	CCWWGG	1 cut(s)	470
Bst2UI	CCWGG	1 cut(s)	311
Bst4CI	ACNGT	1 cut(s)	269
Bst6I	CTCTTC	1 cut(s)	116
BstAFI	CTTAAG	1 cut(s)	158
BstC8I	GCNNGC	2 cut(s)	233, 237
BstDEI	CTNAG	1 cut(s)	81
BstF5I	GGATG	1 cut(s)	52
BstFNI	CGCG	1 cut(s)	199
BstKTI	GATC	1 cut(s)	165
BstMBI	GATC	1 cut(s)	162
BstNI	CCWGG	1 cut(s)	311
BstSCI	CCNGG	2 cut(s)	309, 411
BstSFI	CTRYAG	1 cut(s)	33
BstUI	CGCG	1 cut(s)	199
BstX2I	RGATCY	1 cut(s)	162
BstYI	RGATCY	1 cut(s)	162
BsuRI	GGCC	2 cut(s)	235, 475
BtsCI	GGATG	1 cut(s)	52
Cac8I	GCNNGC	2 cut(s)	233, 237
CseI	GACGC	1 cut(s)	205
CspCI	CAANNNNNGTGG	2 cut(s)	325, 360
CviJI	RGCY	4 cut(s)	32, 231, 235, 475
CviKI_1	RGCY	4 cut(s)	32, 231, 235, 475
DdeI	CTNAG	1 cut(s)	81
DpnI	GATC	1 cut(s)	164
DpnII	GATC	1 cut(s)	162
DrdI	GACNNNNNNGTC	1 cut(s)	401
DseDI	GACNNNNNNGTC	1 cut(s)	401
Eam1104I	CTCTTC	1 cut(s)	116
EarI	CTCTTC	1 cut(s)	116
Eco130I	CCWWGG	1 cut(s)	470
Eco147I	AGGCCT	1 cut(s)	475
EcoRI	GAATTC	1 cut(s)	298
EcoRII	CCWGG	1 cut(s)	309
EcoT14I	CCWWGG	1 cut(s)	470
EcoT22I	ATGCAT	1 cut(s)	536
ErhI	CCWWGG	1 cut(s)	470
FaqI	GGGAC	1 cut(s)	395
Fnu4HI	GCNGC	1 cut(s)	205
FokI	GGATG	1 cut(s)	59
Fsp4HI	GCNGC	1 cut(s)	205
FspBI	CTAG	3 cut(s)	260, 330, 471
GluI	GCNGC	1 cut(s)	205
HaeIII	GGCC	2 cut(s)	235, 475
HapII	CCGG	1 cut(s)	413
HgaI	GACGC	1 cut(s)	205
HinfI	GANTC	1 cut(s)	368
HpaII	CCGG	1 cut(s)	413
Hpy188I	TCNGA	1 cut(s)	373
HpyAV	CCTTC	3 cut(s)	220, 283, 287
HpyCH4III	ACNGT	1 cut(s)	269
HpyCH4V	TGCA	3 cut(s)	90, 239, 534
HpyF3I	CTNAG	1 cut(s)	81
Kzo9I	GATC	1 cut(s)	162
LpnPI	CCDG	7 cut(s)	86, 217, 249, 296, 323, 426, 445
MaeI	CTAG	3 cut(s)	260, 330, 471
MaeIII	GTNAC	1 cut(s)	193
MalI	GATC	1 cut(s)	164
MboI	GATC	1 cut(s)	162
MboII	GAAGA	5 cut(s)	133, 377, 401, 498, 501
MflI	RGATCY	1 cut(s)	162
MluCI	AATT	9 cut(s)	92, 102, 113, 145, 248, 298, 305, 382, 514
MmeI	TCCRAC	1 cut(s)	33
MnlI	CCTC	2 cut(s)	32, 486
Mph1103I	ATGCAT	1 cut(s)	536
MroXI	GAANNNNTTC	2 cut(s)	496, 516
MseI	TTAA	3 cut(s)	12, 159, 381
MspCI	CTTAAG	1 cut(s)	158
MspI	CCGG	1 cut(s)	413
MspR9I	CCNGG	2 cut(s)	311, 413
Mva1269I	GAATGC	2 cut(s)	239, 536
MvaI	CCWGG	1 cut(s)	311
MvnI	CGCG	1 cut(s)	199
NciI	CCSGG	1 cut(s)	413
NdeII	GATC	1 cut(s)	162
NlaIV	GGNNCC	1 cut(s)	271
NmuCI	GTSAC	1 cut(s)	193
NsiI	ATGCAT	1 cut(s)	536
PceI	AGGCCT	1 cut(s)	475
PctI	GAATGC	2 cut(s)	239, 536
PdmI	GAANNNNTTC	2 cut(s)	496, 516
PfeI	GAWTC	1 cut(s)	368
PfoI	TCCNGGA	1 cut(s)	411
PkrI	GCNGC	1 cut(s)	206
PshBI	ATTAAT	1 cut(s)	381
Psp6I	CCWGG	1 cut(s)	309
PspGI	CCWGG	1 cut(s)	309
PspN4I	GGNNCC	1 cut(s)	271
PsuI	RGATCY	1 cut(s)	162
SaqAI	TTAA	3 cut(s)	12, 159, 381
SatI	GCNGC	1 cut(s)	205
Sau3AI	GATC	1 cut(s)	162
ScrFI	CCNGG	2 cut(s)	311, 413
SetI	ASST	5 cut(s)	34, 43, 216, 315, 526
SfcI	CTRYAG	1 cut(s)	33
SmlI	CTYRAG	1 cut(s)	158
SmoI	CTYRAG	1 cut(s)	158
SpeI	ACTAGT	1 cut(s)	329
Sse9I	AATT	9 cut(s)	92, 102, 113, 145, 248, 298, 305, 382, 514
SseBI	AGGCCT	1 cut(s)	475
SsiI	CCGC	1 cut(s)	204
SspMI	CTAG	3 cut(s)	260, 330, 471
StuI	AGGCCT	1 cut(s)	475
StyD4I	CCNGG	2 cut(s)	309, 411
StyI	CCWWGG	1 cut(s)	470
TaaI	ACNGT	1 cut(s)	269
TaqI	TCGA	1 cut(s)	405
TasI	AATT	9 cut(s)	92, 102, 113, 145, 248, 298, 305, 382, 514
TauI	GCSGC	1 cut(s)	207
TfiI	GAWTC	1 cut(s)	368
Tru1I	TTAA	3 cut(s)	12, 159, 381
Tru9I	TTAA	3 cut(s)	12, 159, 381
TseFI	GTSAC	1 cut(s)	193
Tsp45I	GTSAC	1 cut(s)	193
TspDTI	ATGAA	1 cut(s)	306
Vha464I	CTTAAG	1 cut(s)	158
VspI	ATTAAT	1 cut(s)	381
XapI	RAATTY	8 cut(s)	92, 102, 113, 145, 248, 298, 305, 514
XmaJI	CCTAGG	1 cut(s)	470
XmnI	GAANNNNTTC	2 cut(s)	496, 516
XspI	CTAG	3 cut(s)	260, 330, 471
Zsp2I	ATGCAT	1 cut(s)	536

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.