B3 domain-containing
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 624, 1000 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 893 |
| AclI | AACGTT | 1 cut(s) | 829 |
| AclWI | GGATC | 4 cut(s) | 56, 180, 1073, 1086 |
| AcoI | YGGCCR | 1 cut(s) | 221 |
| AcsI | RAATTY | 7 cut(s) | 87, 121, 483, 713, 1030, 1210, 1265 |
| AcuI | CTGAAG | 4 cut(s) | 521, 888, 1072, 1166 |
| AfaI | GTAC | 3 cut(s) | 138, 986, 1128 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 893 |
| AflII | CTTAAG | 3 cut(s) | 43, 143, 680 |
| AgeI | ACCGGT | 1 cut(s) | 592 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 650 |
| AjnI | CCWGG | 1 cut(s) | 886 |
| AluBI | AGCT | 6 cut(s) | 26, 148, 527, 737, 1055, 1315 |
| AluI | AGCT | 6 cut(s) | 26, 148, 527, 737, 1055, 1315 |
| Alw21I | GWGCWC | 2 cut(s) | 667, 1317 |
| Alw26I | GTCTC | 1 cut(s) | 637 |
| Alw44I | GTGCAC | 1 cut(s) | 663 |
| AlwI | GGATC | 4 cut(s) | 56, 180, 1073, 1086 |
| Ama87I | CYCGRG | 1 cut(s) | 347 |
| AoxI | GGCC | 5 cut(s) | 221, 406, 889, 1022, 1202 |
| ApaLI | GTGCAC | 1 cut(s) | 663 |
| ApeKI | GCWGC | 1 cut(s) | 1055 |
| ApoI | RAATTY | 7 cut(s) | 87, 121, 483, 713, 1030, 1210, 1265 |
| AsiGI | ACCGGT | 1 cut(s) | 592 |
| AsuC2I | CCSGG | 1 cut(s) | 1144 |
| AsuHPI | GGTGA | 3 cut(s) | 803, 876, 1060 |
| AsuII | TTCGAA | 1 cut(s) | 555 |
| AvaI | CYCGRG | 1 cut(s) | 347 |
| BaeGI | GKGCMC | 1 cut(s) | 667 |
| BalI | TGGCCA | 1 cut(s) | 223 |
| BamHI | GGATCC | 1 cut(s) | 1078 |
| BanII | GRGCYC | 2 cut(s) | 1048, 1317 |
| Bbv12I | GWGCWC | 2 cut(s) | 667, 1317 |
| BbvI | GCAGC | 1 cut(s) | 1042 |
| BccI | CCATC | 6 cut(s) | 188, 346, 634, 686, 1090, 1282 |
| BciT130I | CCWGG | 1 cut(s) | 888 |
| BcnI | CCSGG | 1 cut(s) | 1144 |
| BcoDI | GTCTC | 1 cut(s) | 637 |
| BfaI | CTAG | 3 cut(s) | 56, 266, 474 |
| BfmI | CTRYAG | 1 cut(s) | 324 |
| BfrI | CTTAAG | 3 cut(s) | 43, 143, 680 |
| BfuAI | ACCTGC | 2 cut(s) | 624, 1000 |
| BisI | GCNGC | 1 cut(s) | 1056 |
| BlsI | GCNGC | 1 cut(s) | 1057 |
| Bme1390I | CCNGG | 2 cut(s) | 888, 1144 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 650 |
| BmeT110I | CYCGRG | 1 cut(s) | 347 |
| BmiI | GGNNCC | 2 cut(s) | 1080, 1240 |
| BmrFI | CCNGG | 2 cut(s) | 888, 1144 |
| BmsI | GCATC | 2 cut(s) | 511, 853 |
| Bpu10I | CCTNAGC | 1 cut(s) | 342 |
| Bpu14I | TTCGAA | 1 cut(s) | 555 |
| BpuMI | CCSGG | 1 cut(s) | 1144 |
| BsaAI | YACGTR | 1 cut(s) | 668 |
| BsaJI | CCNNGG | 3 cut(s) | 490, 607, 892 |
| BsaWI | WCCGGW | 1 cut(s) | 592 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 893 |
| Bse118I | RCCGGY | 1 cut(s) | 592 |
| Bse1I | ACTGG | 3 cut(s) | 134, 1006, 1130 |
| Bse3DI | GCAATG | 1 cut(s) | 829 |
| BseBI | CCWGG | 1 cut(s) | 888 |
| BseDI | CCNNGG | 3 cut(s) | 490, 607, 892 |
| BseGI | GGATG | 3 cut(s) | 502, 626, 1082 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 893 |
| BseMI | GCAATG | 1 cut(s) | 829 |
| BseMII | CTCAG | 1 cut(s) | 193 |
| BseNI | ACTGG | 3 cut(s) | 134, 1006, 1130 |
| BseRI | GAGGAG | 1 cut(s) | 432 |
| BseSI | GKGCMC | 1 cut(s) | 667 |
| BseXI | GCAGC | 1 cut(s) | 1042 |
| BshFI | GGCC | 5 cut(s) | 223, 408, 891, 1024, 1204 |
| BshTI | ACCGGT | 1 cut(s) | 592 |
| BsiHKAI | GWGCWC | 2 cut(s) | 667, 1317 |
| BsiHKCI | CYCGRG | 1 cut(s) | 347 |
| BsiSI | CCGG | 2 cut(s) | 593, 1144 |
| BslFI | GGGAC | 2 cut(s) | 785, 861 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 893 |
| BsmAI | GTCTC | 1 cut(s) | 637 |
| BsmFI | GGGAC | 2 cut(s) | 785, 861 |
| BsnI | GGCC | 5 cut(s) | 223, 408, 891, 1024, 1204 |
| BsoBI | CYCGRG | 1 cut(s) | 347 |
| Bsp119I | TTCGAA | 1 cut(s) | 555 |
| Bsp1286I | GDGCHC | 3 cut(s) | 667, 1048, 1317 |
| Bsp143I | GATC | 5 cut(s) | 48, 185, 910, 1078, 1196 |
| Bsp19I | CCATGG | 1 cut(s) | 892 |
| BspANI | GGCC | 5 cut(s) | 223, 408, 891, 1024, 1204 |
| BspCNI | CTCAG | 1 cut(s) | 192 |
| BspLI | GGNNCC | 2 cut(s) | 1080, 1240 |
| BspMI | ACCTGC | 2 cut(s) | 624, 1000 |
| BspPI | GGATC | 4 cut(s) | 56, 180, 1073, 1086 |
| BspQI | GCTCTTC | 1 cut(s) | 540 |
| BspT104I | TTCGAA | 1 cut(s) | 555 |
| BspTI | CTTAAG | 3 cut(s) | 43, 143, 680 |
| BsrDI | GCAATG | 1 cut(s) | 829 |
| BsrFI | RCCGGY | 1 cut(s) | 592 |
| BsrI | ACTGG | 3 cut(s) | 134, 1006, 1130 |
| BssAI | RCCGGY | 1 cut(s) | 592 |
| BssECI | CCNNGG | 3 cut(s) | 490, 607, 892 |
| BssMI | GATC | 5 cut(s) | 48, 185, 910, 1078, 1196 |
| BssT1I | CCWWGG | 2 cut(s) | 490, 892 |
| Bst2UI | CCWGG | 1 cut(s) | 888 |
| Bst4CI | ACNGT | 2 cut(s) | 20, 1174 |
| Bst6I | CTCTTC | 3 cut(s) | 15, 540, 1185 |
| BstAFI | CTTAAG | 3 cut(s) | 43, 143, 680 |
| BstBAI | YACGTR | 1 cut(s) | 668 |
| BstBI | TTCGAA | 1 cut(s) | 555 |
| BstC8I | GCNNGC | 1 cut(s) | 663 |
| BstDEI | CTNAG | 2 cut(s) | 179, 342 |
| BstDSI | CCRYGG | 1 cut(s) | 892 |
| BstEII | GGTNACC | 1 cut(s) | 611 |
| BstF5I | GGATG | 3 cut(s) | 502, 626, 1082 |
| BstKTI | GATC | 5 cut(s) | 51, 188, 913, 1081, 1199 |
| BstMAI | GTCTC | 1 cut(s) | 637 |
| BstMBI | GATC | 5 cut(s) | 48, 185, 910, 1078, 1196 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 474, 1052 |
| BstNI | CCWGG | 1 cut(s) | 888 |
| BstNSI | RCATGY | 1 cut(s) | 1127 |
| BstPI | GGTNACC | 1 cut(s) | 611 |
| BstSCI | CCNGG | 2 cut(s) | 886, 1142 |
| BstSFI | CTRYAG | 1 cut(s) | 324 |
| BstSLI | GKGCMC | 1 cut(s) | 667 |
| BstV1I | GCAGC | 1 cut(s) | 1042 |
| BstX2I | RGATCY | 2 cut(s) | 185, 1078 |
| BstYI | RGATCY | 2 cut(s) | 185, 1078 |
| BsuRI | GGCC | 5 cut(s) | 223, 408, 891, 1024, 1204 |
| BtgI | CCRYGG | 1 cut(s) | 892 |
| BtsCI | GGATG | 3 cut(s) | 502, 626, 1082 |
| BtsIMutI | CAGTG | 1 cut(s) | 999 |
| BveI | ACCTGC | 2 cut(s) | 624, 1000 |
| Cac8I | GCNNGC | 1 cut(s) | 663 |
| Cfr10I | RCCGGY | 1 cut(s) | 592 |
| CseI | GACGC | 1 cut(s) | 508 |
| Csp6I | GTAC | 3 cut(s) | 137, 985, 1127 |
| CspAI | ACCGGT | 1 cut(s) | 592 |
| CviAII | CATG | 5 cut(s) | 31, 410, 893, 937, 1124 |
| CviQI | GTAC | 3 cut(s) | 137, 985, 1127 |
| DdeI | CTNAG | 2 cut(s) | 179, 342 |
| DpnI | GATC | 5 cut(s) | 50, 187, 912, 1080, 1198 |
| DpnII | GATC | 5 cut(s) | 48, 185, 910, 1078, 1196 |
| DraI | TTTAAA | 1 cut(s) | 1029 |
| DriI | GACNNNNNGTC | 1 cut(s) | 650 |
| EaeI | YGGCCR | 1 cut(s) | 221 |
| Eam1104I | CTCTTC | 3 cut(s) | 15, 540, 1185 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 650 |
| EarI | CTCTTC | 3 cut(s) | 15, 540, 1185 |
| Ecl136II | GAGCTC | 1 cut(s) | 1315 |
| Eco130I | CCWWGG | 2 cut(s) | 490, 892 |
| Eco147I | AGGCCT | 1 cut(s) | 1024 |
| Eco24I | GRGCYC | 2 cut(s) | 1048, 1317 |
| Eco53kI | GAGCTC | 1 cut(s) | 1315 |
| Eco57I | CTGAAG | 4 cut(s) | 521, 888, 1072, 1166 |
| Eco88I | CYCGRG | 1 cut(s) | 347 |
| Eco91I | GGTNACC | 1 cut(s) | 611 |
| EcoICRI | GAGCTC | 1 cut(s) | 1315 |
| EcoO65I | GGTNACC | 1 cut(s) | 611 |
| EcoRI | GAATTC | 1 cut(s) | 713 |
| EcoRII | CCWGG | 1 cut(s) | 886 |
| EcoT14I | CCWWGG | 2 cut(s) | 490, 892 |
| EcoT38I | GRGCYC | 2 cut(s) | 1048, 1317 |
| ErhI | CCWWGG | 2 cut(s) | 490, 892 |
| FaeI | CATG | 5 cut(s) | 34, 413, 896, 940, 1127 |
| FaqI | GGGAC | 2 cut(s) | 785, 861 |
| FatI | CATG | 5 cut(s) | 30, 409, 892, 936, 1123 |
| Fnu4HI | GCNGC | 1 cut(s) | 1056 |
| FokI | GGATG | 3 cut(s) | 489, 613, 1069 |
| FriOI | GRGCYC | 2 cut(s) | 1048, 1317 |
| Fsp4HI | GCNGC | 1 cut(s) | 1056 |
| FspBI | CTAG | 3 cut(s) | 56, 266, 474 |
| GluI | GCNGC | 1 cut(s) | 1056 |
| HaeIII | GGCC | 5 cut(s) | 223, 408, 891, 1024, 1204 |
| HapII | CCGG | 2 cut(s) | 593, 1144 |
| HgaI | GACGC | 1 cut(s) | 508 |
| Hin1II | CATG | 5 cut(s) | 34, 413, 896, 940, 1127 |
| HindIII | AAGCTT | 1 cut(s) | 146 |
| HinfI | GANTC | 7 cut(s) | 365, 401, 557, 741, 1092, 1177, 1232 |
| HpaII | CCGG | 2 cut(s) | 593, 1144 |
| HphI | GGTGA | 3 cut(s) | 803, 876, 1060 |
| Hpy166II | GTNNAC | 3 cut(s) | 665, 1068, 1348 |
| Hpy188I | TCNGA | 6 cut(s) | 182, 370, 540, 562, 1091, 1190 |
| Hpy188III | TCNNGA | 6 cut(s) | 14, 56, 248, 655, 1049, 1236 |
| Hpy8I | GTNNAC | 3 cut(s) | 665, 1068, 1348 |
| HpyAV | CCTTC | 3 cut(s) | 275, 1096, 1286 |
| HpyCH4III | ACNGT | 2 cut(s) | 20, 1174 |
| HpyCH4IV | ACGT | 2 cut(s) | 667, 829 |
| HpyCH4V | TGCA | 7 cut(s) | 619, 638, 665, 767, 822, 960, 1123 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 474, 1052 |
| HpyF3I | CTNAG | 2 cut(s) | 179, 342 |
| HpySE526I | ACGT | 2 cut(s) | 667, 829 |
| Hsp92II | CATG | 5 cut(s) | 34, 413, 896, 940, 1127 |
| Kzo9I | GATC | 5 cut(s) | 48, 185, 910, 1078, 1196 |
| LguI | GCTCTTC | 1 cut(s) | 540 |
| LmnI | GCTCC | 1 cut(s) | 1238 |
| Lsp1109I | GCAGC | 1 cut(s) | 1042 |
| LweI | GCATC | 2 cut(s) | 511, 853 |
| MaeI | CTAG | 3 cut(s) | 56, 266, 474 |
| MaeII | ACGT | 2 cut(s) | 667, 829 |
| MaeIII | GTNAC | 8 cut(s) | 611, 668, 882, 1012, 1093, 1132, 1174, 1270 |
| MalI | GATC | 5 cut(s) | 50, 187, 912, 1080, 1198 |
| MboI | GATC | 5 cut(s) | 48, 185, 910, 1078, 1196 |
| MfeI | CAATTG | 1 cut(s) | 906 |
| MflI | RGATCY | 2 cut(s) | 185, 1078 |
| MhlI | GDGCHC | 3 cut(s) | 667, 1048, 1317 |
| MlsI | TGGCCA | 1 cut(s) | 223 |
| MluNI | TGGCCA | 1 cut(s) | 223 |
| MlyI | GAGTC | 3 cut(s) | 410, 1101, 1171 |
| MmeI | TCCRAC | 2 cut(s) | 213, 315 |
| MnlI | CCTC | 5 cut(s) | 410, 458, 489, 602, 1155 |
| Mox20I | TGGCCA | 1 cut(s) | 223 |
| MscI | TGGCCA | 1 cut(s) | 223 |
| MseI | TTAA | 6 cut(s) | 44, 84, 144, 681, 942, 1028 |
| Msp20I | TGGCCA | 1 cut(s) | 223 |
| MspCI | CTTAAG | 3 cut(s) | 43, 143, 680 |
| MspI | CCGG | 2 cut(s) | 593, 1144 |
| MspR9I | CCNGG | 2 cut(s) | 888, 1144 |
| MunI | CAATTG | 1 cut(s) | 906 |
| MvaI | CCWGG | 1 cut(s) | 888 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 474, 1052 |
| NciI | CCSGG | 1 cut(s) | 1144 |
| NcoI | CCATGG | 1 cut(s) | 892 |
| NdeII | GATC | 5 cut(s) | 48, 185, 910, 1078, 1196 |
| NlaIII | CATG | 5 cut(s) | 34, 413, 896, 940, 1127 |
| NlaIV | GGNNCC | 2 cut(s) | 1080, 1240 |
| NmuCI | GTSAC | 4 cut(s) | 882, 1093, 1174, 1270 |
| NspI | RCATGY | 1 cut(s) | 1127 |
| NspV | TTCGAA | 1 cut(s) | 555 |
| PceI | AGGCCT | 1 cut(s) | 1024 |
| PciSI | GCTCTTC | 1 cut(s) | 540 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 745 |
| PfeI | GAWTC | 4 cut(s) | 365, 557, 741, 1232 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 893 |
| PinAI | ACCGGT | 1 cut(s) | 592 |
| PkrI | GCNGC | 1 cut(s) | 1057 |
| PleI | GAGTC | 3 cut(s) | 409, 1100, 1171 |
| PpsI | GAGTC | 3 cut(s) | 409, 1100, 1171 |
| Ppu21I | YACGTR | 1 cut(s) | 668 |
| Psp124BI | GAGCTC | 1 cut(s) | 1317 |
| Psp1406I | AACGTT | 1 cut(s) | 829 |
| Psp6I | CCWGG | 1 cut(s) | 886 |
| PspEI | GGTNACC | 1 cut(s) | 611 |
| PspGI | CCWGG | 1 cut(s) | 886 |
| PspN4I | GGNNCC | 2 cut(s) | 1080, 1240 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1329, 1361 |
| PsuI | RGATCY | 2 cut(s) | 185, 1078 |
| RsaI | GTAC | 3 cut(s) | 138, 986, 1128 |
| RsaNI | GTAC | 3 cut(s) | 137, 985, 1127 |
| SacI | GAGCTC | 1 cut(s) | 1317 |
| SapI | GCTCTTC | 1 cut(s) | 540 |
| SaqAI | TTAA | 6 cut(s) | 44, 84, 144, 681, 942, 1028 |
| SatI | GCNGC | 1 cut(s) | 1056 |
| Sau3AI | GATC | 5 cut(s) | 48, 185, 910, 1078, 1196 |
| SchI | GAGTC | 3 cut(s) | 410, 1101, 1171 |
| ScrFI | CCNGG | 2 cut(s) | 888, 1144 |
| SduI | GDGCHC | 3 cut(s) | 667, 1048, 1317 |
| SfaNI | GCATC | 2 cut(s) | 511, 853 |
| SfcI | CTRYAG | 1 cut(s) | 324 |
| SfuI | TTCGAA | 1 cut(s) | 555 |
| SmlI | CTYRAG | 3 cut(s) | 43, 143, 680 |
| SmoI | CTYRAG | 3 cut(s) | 43, 143, 680 |
| SseBI | AGGCCT | 1 cut(s) | 1024 |
| SspMI | CTAG | 3 cut(s) | 56, 266, 474 |
| SstI | GAGCTC | 1 cut(s) | 1317 |
| StuI | AGGCCT | 1 cut(s) | 1024 |
| StyD4I | CCNGG | 2 cut(s) | 886, 1142 |
| StyI | CCWWGG | 2 cut(s) | 490, 892 |
| TaaI | ACNGT | 2 cut(s) | 20, 1174 |
| TaiI | ACGT | 2 cut(s) | 670, 832 |
| TaqI | TCGA | 5 cut(s) | 481, 555, 711, 739, 913 |
| TatI | WGTACW | 2 cut(s) | 136, 984 |
| TfiI | GAWTC | 4 cut(s) | 365, 557, 741, 1232 |
| Tru1I | TTAA | 6 cut(s) | 44, 84, 144, 681, 942, 1028 |
| Tru9I | TTAA | 6 cut(s) | 44, 84, 144, 681, 942, 1028 |
| TscAI | CASTG | 1 cut(s) | 1006 |
| TseFI | GTSAC | 4 cut(s) | 882, 1093, 1174, 1270 |
| TseI | GCWGC | 1 cut(s) | 1055 |
| Tsp45I | GTSAC | 4 cut(s) | 882, 1093, 1174, 1270 |
| TspDTI | ATGAA | 7 cut(s) | 110, 294, 295, 738, 840, 987, 1023 |
| TspGWI | ACGGA | 1 cut(s) | 1289 |
| TspRI | CASTG | 1 cut(s) | 1006 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 893 |
| Vha464I | CTTAAG | 3 cut(s) | 43, 143, 680 |
| VneI | GTGCAC | 1 cut(s) | 663 |
| XapI | RAATTY | 7 cut(s) | 87, 121, 483, 713, 1030, 1210, 1265 |
| XbaI | TCTAGA | 1 cut(s) | 55 |
| XceI | RCATGY | 1 cut(s) | 1127 |
| XspI | CTAG | 3 cut(s) | 56, 266, 474 |